Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010986.1

Orthogroup ID

OG0015811

Physical Location & Seq

Genomic Coordinates Forward (+)

20326 .. 21422

Gene Structure 1097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010986.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgtcggaacctttagttgttggaagagtcataggagatgttcttgattactttaccccaactactaaaatgattgtcacttacagcaccaaactcgtcttcaatggacatgagctcttcccatctgcagtcaccgccaaacctagagttgagattcaaggaggagacatgagatcattcttcactctggtgatgacagacccagatgttcctggccccagtgatccttatttgaaggagcacctgcactggattgtgacagacattccaggcaccacagatgttacatttggaagagagatggtgagctacgagatgccaaggccaaacataggaatccataggtttgtgtttgttcttttcaagcagaaacgaaggcagtcggtgaacccaccttcctcaagggatcacttcaacacccgaagcttcgcagccgaaaacgacctcggtcttcctgttgcggccgtttacttcaatgcccagagagaaacggcagcaagaagacgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009909 GO:0009910 GO:0010033 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031982 GO:0033036 GO:0033365 GO:0034285 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0080090 GO:0090342 GO:0090344 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

169

Amino Acids

19.16

Weight (kDa)

9.0

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03840
fragaria_vesca	FvH4_6g18480
malus_domestica	MD12G1023900.v1.1 MD14G1021100.v1.1
prunus_persica	Prupe.7G112600_v2.0.a1
pyrus_communis	pycom14g02060
rosa_chinensis	RchiOBHm_Chr3g0473021
rosa_laevigata	RLG00000024037
rosa_multiflora	Rmu_sc0010986.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408380
rosa_rugosa	Rorug03G0130700
rosa_samantha	Rh3AG182500 Rh3BG208800 Rh3CG205800
rosa_wichuraiana	Rw3G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	252
AccB1I	GGYRCC	1 cut(s)	272
AciI	CCGC	2 cut(s)	135, 461
AclWI	GGATC	2 cut(s)	218, 414
AcoI	YGGCCR	1 cut(s)	462
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	6 cut(s)	103, 158, 235, 364, 415, 475
AjnI	CCWGG	2 cut(s)	211, 268
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AleI	CACNNNNGTG	1 cut(s)	188
AloI	GAACNNNNNNTCC	2 cut(s)	380, 412
AluBI	AGCT	3 cut(s)	115, 309, 426
AluI	AGCT	3 cut(s)	115, 309, 426
Alw21I	GWGCWC	2 cut(s)	117, 243
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	218, 414
AoxI	GGCC	3 cut(s)	214, 323, 462
ApeKI	GCWGC	2 cut(s)	431, 494
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	4 cut(s)	124, 202, 316, 397
BanI	GGYRCC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	117
BbsI	GAAGAC	2 cut(s)	91, 443
Bbv12I	GWGCWC	2 cut(s)	117, 243
BbvI	GCAGC	2 cut(s)	443, 506
BccI	CCATC	2 cut(s)	130, 295
BceAI	ACGGC	2 cut(s)	449, 507
BcgI	CGANNNNNNTGC	2 cut(s)	76, 110
BciT130I	CCWGG	2 cut(s)	213, 270
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	2 cut(s)	144, 508
BfmI	CTRYAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	252
BisI	GCNGC	3 cut(s)	432, 462, 495
BlsI	GCNGC	3 cut(s)	433, 463, 496
Bme1390I	CCNGG	2 cut(s)	213, 270
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	3 cut(s)	9, 217, 274
BmrFI	CCNGG	2 cut(s)	213, 270
BmrI	ACTGGG	1 cut(s)	213
BmsI	GCATC	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	213
BoxI	GACNNNNGTC	1 cut(s)	447
BpiI	GAAGAC	2 cut(s)	91, 443
BpuEI	CTTGAG	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	320, 445
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	219, 254
BseBI	CCWGG	2 cut(s)	213, 270
BseDI	CCNNGG	2 cut(s)	320, 445
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseNI	ACTGG	2 cut(s)	219, 254
BseRI	GAGGAG	1 cut(s)	177
BseX3I	CGGCCG	1 cut(s)	462
BseXI	GCAGC	2 cut(s)	443, 506
BsgI	GTGCAG	1 cut(s)	230
Bsh1285I	CGRYCG	1 cut(s)	465
BshFI	GGCC	3 cut(s)	216, 325, 464
BshNI	GGYRCC	1 cut(s)	272
BsiEI	CGRYCG	1 cut(s)	465
BsiHKAI	GWGCWC	2 cut(s)	117, 243
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	159
BsnI	GGCC	3 cut(s)	216, 325, 464
Bsp1286I	GDGCHC	2 cut(s)	117, 243
Bsp143I	GATC	3 cut(s)	173, 223, 406
BspACI	CCGC	2 cut(s)	135, 461
BspANI	GGCC	3 cut(s)	216, 325, 464
BspLI	GGNNCC	3 cut(s)	9, 217, 274
BspMAI	CTGCAG	1 cut(s)	130
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	2 cut(s)	218, 414
BspQI	GCTCTTC	1 cut(s)	122
BspT107I	GGYRCC	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	219, 254
BssECI	CCNNGG	2 cut(s)	320, 445
BssMI	GATC	3 cut(s)	173, 223, 406
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	2 cut(s)	213, 270
Bst6I	CTCTTC	3 cut(s)	19, 122, 289
BstKTI	GATC	3 cut(s)	176, 226, 409
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	3 cut(s)	173, 223, 406
BstMCI	CGRYCG	1 cut(s)	465
BstMWI	GCNNNNNNNGC	1 cut(s)	134
BstNI	CCWGG	2 cut(s)	213, 270
BstPAI	GACNNNNGTC	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	211, 268
BstSFI	CTRYAG	1 cut(s)	126
BstV1I	GCAGC	2 cut(s)	443, 506
BstV2I	GAAGAC	2 cut(s)	91, 443
BstZI	CGGCCG	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	216, 325, 464
BtsIMutI	CAGTG	2 cut(s)	226, 247
BveI	ACCTGC	1 cut(s)	252
Cfr13I	GGNCC	1 cut(s)	215
CviAII	CATG	2 cut(s)	110, 169
CviJI	RGCY	7 cut(s)	115, 216, 309, 325, 426, 434, 464
CviKI_1	RGCY	7 cut(s)	115, 216, 309, 325, 426, 434, 464
DpnI	GATC	3 cut(s)	175, 225, 408
DpnII	GATC	3 cut(s)	173, 223, 406
EaeI	YGGCCR	1 cut(s)	462
EagI	CGGCCG	1 cut(s)	462
Eam1104I	CTCTTC	3 cut(s)	19, 122, 289
EarI	CTCTTC	3 cut(s)	19, 122, 289
Ecl136II	GAGCTC	1 cut(s)	115
EclXI	CGGCCG	1 cut(s)	462
Eco130I	CCWWGG	1 cut(s)	320
Eco24I	GRGCYC	1 cut(s)	117
Eco52I	CGGCCG	1 cut(s)	462
Eco53kI	GAGCTC	1 cut(s)	115
EcoICRI	GAGCTC	1 cut(s)	115
EcoRII	CCWGG	2 cut(s)	211, 268
EcoT14I	CCWWGG	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	2 cut(s)	113, 172
FaiI	YATR	5 cut(s)	32, 111, 170, 332, 342
FatI	CATG	2 cut(s)	109, 168
Fnu4HI	GCNGC	3 cut(s)	432, 462, 495
FriOI	GRGCYC	1 cut(s)	117
Fsp4HI	GCNGC	3 cut(s)	432, 462, 495
FspBI	CTAG	2 cut(s)	144, 508
GluI	GCNGC	3 cut(s)	432, 462, 495
HaeIII	GGCC	3 cut(s)	216, 325, 464
Hin1II	CATG	2 cut(s)	113, 172
HindIII	AAGCTT	1 cut(s)	424
HinfI	GANTC	3 cut(s)	27, 154, 336
HphI	GGTGA	4 cut(s)	124, 202, 316, 397
Hpy166II	GTNNAC	2 cut(s)	388, 469
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	1 cut(s)	44
Hpy8I	GTNNAC	2 cut(s)	388, 469
HpyAV	CCTTC	3 cut(s)	229, 369, 405
HpyCH4V	TGCA	2 cut(s)	128, 247
HpyF10VI	GCNNNNNNNGC	1 cut(s)	134
Hsp92II	CATG	2 cut(s)	113, 172
Kzo9I	GATC	3 cut(s)	173, 223, 406
LguI	GCTCTTC	1 cut(s)	122
LmnI	GCTCC	1 cut(s)	238
Lsp1109I	GCAGC	2 cut(s)	443, 506
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	2 cut(s)	144, 508
MaeIII	GTNAC	4 cut(s)	76, 130, 256, 283
MalI	GATC	3 cut(s)	175, 225, 408
MboI	GATC	3 cut(s)	173, 223, 406
MboII	GAAGA	6 cut(s)	36, 91, 109, 172, 306, 443
MhlI	GDGCHC	2 cut(s)	117, 243
MlyI	GAGTC	1 cut(s)	36
MnlI	CCTC	3 cut(s)	155, 409, 455
MslI	CAYNNNNRTG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	213, 270
MvaI	CCWGG	2 cut(s)	213, 270
MwoI	GCNNNNNNNGC	1 cut(s)	134
NdeII	GATC	3 cut(s)	173, 223, 406
NlaIII	CATG	2 cut(s)	113, 172
NlaIV	GGNNCC	3 cut(s)	9, 217, 274
NmuCI	GTSAC	3 cut(s)	76, 130, 256
OliI	CACNNNNGTG	1 cut(s)	188
PaqCI	CACCTGC	1 cut(s)	252
PciSI	GCTCTTC	1 cut(s)	122
PfeI	GAWTC	2 cut(s)	154, 336
PkrI	GCNGC	3 cut(s)	433, 463, 496
PleI	GAGTC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	35
PshAI	GACNNNNGTC	1 cut(s)	447
Psp124BI	GAGCTC	1 cut(s)	117
Psp6I	CCWGG	2 cut(s)	211, 268
PspGI	CCWGG	2 cut(s)	211, 268
PspN4I	GGNNCC	3 cut(s)	9, 217, 274
PspPI	GGNCC	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	130
RseI	CAYNNNNRTG	1 cut(s)	188
SacI	GAGCTC	1 cut(s)	117
SapI	GCTCTTC	1 cut(s)	122
SatI	GCNGC	3 cut(s)	432, 462, 495
Sau3AI	GATC	3 cut(s)	173, 223, 406
Sau96I	GGNCC	1 cut(s)	215
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	2 cut(s)	213, 270
SduI	GDGCHC	2 cut(s)	117, 243
SetI	ASST	9 cut(s)	13, 117, 145, 246, 311, 347, 397, 428, 447
SfaNI	GCATC	1 cut(s)	306
SfcI	CTRYAG	1 cut(s)	126
SmiMI	CAYNNNNRTG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	400
SmoI	CTYRAG	1 cut(s)	400
SsiI	CCGC	2 cut(s)	135, 461
SspMI	CTAG	2 cut(s)	144, 508
SstI	GAGCTC	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	211, 268
StyI	CCWWGG	1 cut(s)	320
TaqII	GACCGA	1 cut(s)	437
TauI	GCSGC	1 cut(s)	464
TfiI	GAWTC	2 cut(s)	154, 336
TscAI	CASTG	2 cut(s)	226, 254
TseFI	GTSAC	3 cut(s)	76, 130, 256
TseI	GCWGC	2 cut(s)	431, 494
Tsp45I	GTSAC	3 cut(s)	76, 130, 256
TspRI	CASTG	2 cut(s)	226, 254
XspI	CTAG	2 cut(s)	144, 508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.