Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015811

Physical Location & Seq

Genomic Coordinates Reverse (-)

12225843 .. 12226809

Gene Structure 967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g18480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAGATCATTCTTCACTCTGGTAATGACAGACCCAGATGTTCCTGGCCCTAGTGATCCTTATTTGAAAGAGCACCTGCACTGGATTGTGACAGACATTCCTGGCACCACAGATGCTACATTTGGAAGAGAAGTGGTGAGCTACGAGATGCCAAGGCCAAACATAGGCATCCACAGGTTTGTGTTTGTTCTCTTCATGCAAAAACGAAGGCAGTCGGTGAACCCGCCTTCCTCAAGGGATCACTTCAACACCCGAACCTTCGCAGCCGAAAACGACCTTGGTGTTCCTGTTGCTGCCGTTTACTTCAATGCACAGAGAGAAACGGCAGCAAGAAGACGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0007034 GO:0008104 GO:0008150 GO:0009743 GO:0009744 GO:0009889 GO:0009909 GO:0009910 GO:0010033 GO:0010556 GO:0015031 GO:0015833 GO:0016020 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031982 GO:0033036 GO:0033365 GO:0034285 GO:0034613 GO:0042221 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0046907 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0080090 GO:0090342 GO:0090344 GO:0140110 GO:1901700 GO:1903506 GO:2000026 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBP

Protein Analysis

114

Amino Acids

12.99

Weight (kDa)

9.39

Isoelectric Point (pI)

52.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PBP	PF01161	5 - 100	1.2e-11	Phosphatidylethanolamine-binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015811)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03840
fragaria_vesca	FvH4_6g18480
malus_domestica	MD12G1023900.v1.1 MD14G1021100.v1.1
prunus_persica	Prupe.7G112600_v2.0.a1
pyrus_communis	pycom14g02060
rosa_chinensis	RchiOBHm_Chr3g0473021
rosa_laevigata	RLG00000024037
rosa_multiflora	Rmu_sc0010986.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408380
rosa_rugosa	Rorug03G0130700
rosa_samantha	Rh3AG182500 Rh3BG208800 Rh3CG205800
rosa_wichuraiana	Rw3G016070

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	84
Acc36I	ACCTGC	1 cut(s)	84
AccB1I	GGYRCC	1 cut(s)	104
AciI	CCGC	1 cut(s)	224
AclWI	GGATC	2 cut(s)	50, 246
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	3 cut(s)	67, 247, 307
AjnI	CCWGG	2 cut(s)	43, 100
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AloI	GAACNNNNNNTCC	2 cut(s)	212, 244
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
Alw21I	GWGCWC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	50, 246
AoxI	GGCC	2 cut(s)	46, 155
ApeKI	GCWGC	3 cut(s)	263, 293, 326
AspS9I	GGNCC	1 cut(s)	47
AsuHPI	GGTGA	2 cut(s)	148, 229
BanI	GGYRCC	1 cut(s)	104
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	3 cut(s)	275, 280, 338
BceAI	ACGGC	2 cut(s)	281, 339
BciT130I	CCWGG	2 cut(s)	45, 102
BfaI	CTAG	2 cut(s)	51, 340
BfuAI	ACCTGC	1 cut(s)	84
BisI	GCNGC	3 cut(s)	264, 294, 327
BlsI	GCNGC	3 cut(s)	265, 295, 328
Bme1390I	CCNGG	2 cut(s)	45, 102
BmgT120I	GGNCC	1 cut(s)	47
BmiI	GGNNCC	1 cut(s)	106
BmrFI	CCNGG	2 cut(s)	45, 102
BmsI	GCATC	3 cut(s)	103, 138, 177
BpuEI	CTTGAG	1 cut(s)	217
BsaJI	CCNNGG	2 cut(s)	152, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse1I	ACTGG	1 cut(s)	86
BseBI	CCWGG	2 cut(s)	45, 102
BseDI	CCNNGG	2 cut(s)	152, 277
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseNI	ACTGG	1 cut(s)	86
BseXI	GCAGC	3 cut(s)	275, 280, 338
BsgI	GTGCAG	1 cut(s)	62
BshFI	GGCC	2 cut(s)	48, 157
BshNI	GGYRCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	164
BsnI	GGCC	2 cut(s)	48, 157
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	3 cut(s)	5, 55, 238
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	2 cut(s)	48, 157
BspLI	GGNNCC	1 cut(s)	106
BspMI	ACCTGC	1 cut(s)	84
BspPI	GGATC	2 cut(s)	50, 246
BspT107I	GGYRCC	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	152, 277
BssMI	GATC	3 cut(s)	5, 55, 238
BssT1I	CCWWGG	2 cut(s)	152, 277
Bst2UI	CCWGG	2 cut(s)	45, 102
Bst6I	CTCTTC	2 cut(s)	121, 197
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	3 cut(s)	8, 58, 241
BstMBI	GATC	3 cut(s)	5, 55, 238
BstNI	CCWGG	2 cut(s)	45, 102
BstSCI	CCNGG	2 cut(s)	43, 100
BstV1I	GCAGC	3 cut(s)	275, 280, 338
BsuRI	GGCC	2 cut(s)	48, 157
BtsCI	GGATG	1 cut(s)	168
BtsIMutI	CAGTG	1 cut(s)	79
BveI	ACCTGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	47
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	4 cut(s)	48, 141, 157, 266
CviKI_1	RGCY	4 cut(s)	48, 141, 157, 266
DpnI	GATC	3 cut(s)	7, 57, 240
DpnII	GATC	3 cut(s)	5, 55, 238
Eam1104I	CTCTTC	2 cut(s)	121, 197
EarI	CTCTTC	2 cut(s)	121, 197
Eco130I	CCWWGG	2 cut(s)	152, 277
EcoRII	CCWGG	2 cut(s)	43, 100
EcoT14I	CCWWGG	2 cut(s)	152, 277
ErhI	CCWWGG	2 cut(s)	152, 277
FaeI	CATG	1 cut(s)	199
FaiI	YATR	2 cut(s)	164, 197
FatI	CATG	1 cut(s)	195
FauI	CCCGC	1 cut(s)	231
Fnu4HI	GCNGC	3 cut(s)	264, 294, 327
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	3 cut(s)	264, 294, 327
FspBI	CTAG	2 cut(s)	51, 340
GluI	GCNGC	3 cut(s)	264, 294, 327
HaeIII	GGCC	2 cut(s)	48, 157
Hin1II	CATG	1 cut(s)	199
HphI	GGTGA	2 cut(s)	148, 229
Hpy166II	GTNNAC	2 cut(s)	220, 301
Hpy8I	GTNNAC	2 cut(s)	220, 301
HpyAV	CCTTC	3 cut(s)	201, 237, 268
HpyCH4V	TGCA	3 cut(s)	79, 199, 311
Hsp92II	CATG	1 cut(s)	199
Kzo9I	GATC	3 cut(s)	5, 55, 238
Lsp1109I	GCAGC	3 cut(s)	275, 280, 338
LweI	GCATC	3 cut(s)	103, 138, 177
MaeI	CTAG	2 cut(s)	51, 340
MaeIII	GTNAC	1 cut(s)	88
MalI	GATC	3 cut(s)	7, 57, 240
MboI	GATC	3 cut(s)	5, 55, 238
MboII	GAAGA	3 cut(s)	4, 138, 184
MhlI	GDGCHC	1 cut(s)	75
MnlI	CCTC	1 cut(s)	241
MspR9I	CCNGG	2 cut(s)	45, 102
MvaI	CCWGG	2 cut(s)	45, 102
NdeII	GATC	3 cut(s)	5, 55, 238
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	106
NmuCI	GTSAC	1 cut(s)	88
PaqCI	CACCTGC	1 cut(s)	84
PkrI	GCNGC	3 cut(s)	265, 295, 328
Psp6I	CCWGG	2 cut(s)	43, 100
PspGI	CCWGG	2 cut(s)	43, 100
PspN4I	GGNNCC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	47
SatI	GCNGC	3 cut(s)	264, 294, 327
Sau3AI	GATC	3 cut(s)	5, 55, 238
Sau96I	GGNCC	1 cut(s)	47
ScrFI	CCNGG	2 cut(s)	45, 102
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	5 cut(s)	78, 143, 179, 260, 279
SfaNI	GCATC	3 cut(s)	103, 138, 177
SmlI	CTYRAG	1 cut(s)	232
SmoI	CTYRAG	1 cut(s)	232
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	2 cut(s)	51, 340
StyD4I	CCNGG	2 cut(s)	43, 100
StyI	CCWWGG	2 cut(s)	152, 277
TscAI	CASTG	1 cut(s)	86
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	3 cut(s)	263, 293, 326
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	1 cut(s)	184
TspRI	CASTG	1 cut(s)	86
XspI	CTAG	2 cut(s)	51, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.