AT5G03980

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017137
Physical Location & Seq
Reverse (-)
1074205 .. 1075289
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G03980.1

Sequence Viewer

Length: 972 bp
ATGTCTACGACCAAAGCATTATCGCTTCTTGTGTTTATACTCTTCGTGTCCCTTGTTCATTCATCGGATCAATGTCCTATCAACTCTATCTACCAATTCGGTGACTCCATCTCCGACACTGGAAACTTAATCCGCAACGGCCCTGCTTCATCTCCCACTCCTAAACCCTTACCTCAACGGGAACACAACGTCTTTGTTAACTTCGGAGTTTCCGGAAGCACAGCACTCAACAGCTCTTTCTTCTCCGAGAGAAATCTCCACGTTCCGGCAACAAACACTCCTCTCTCCATGCAGCTTGCTTGGTTCAAGGGTCATCTACGTTCCACGTGTCACGGCTCTTCTTCGGATTGCTTGAAGCACTCTCTTTTCATGGTCGGTGAGATAGGAGGCAACGACTACAACTACGGTTTCTTCCAAGGCAAACCAATGGAAGAAATCAGAAGCTACATCCCTCACGTGGTTGGAGCCATCACAGCCGCAGCTAGAGAGGTGATCCGTGCTGGTGCGGTTAACGTGGTCGTCCCGGGAAACTTTCCAGTGGGATGTTTTCCGATTTACTTGACGTCTTTTCCCGTGAAAGATACAAAAGATTACGACGACAACGGTTGCTTGACGCATCTCAACGAATTCGCAATGGATCACAATAACCAACTCCAAGAAGCTATAGCTTCTTTGAGAAAAGAGTTTCCAGACGTGGCTATAGTATACGGAGATTACTACAATGCGTTTCAATACGTTCTACGAAGTGAAAGATTCGACAAGAGTGTAGCTTTGAAATCGTGTTGCGGGACCGGTGGAGCTTACAACTACGACGGAAAGAGGCCATACGGAGCAGTGGGAGTTCCGGTGTGTCAGAATCCACACAAGTTCATAAGTTGGGACGGAGTGCACTTGACTCAAAAGGCTTATAGATTCATGTCTAAGTTCTTGAACAATCAGATTCTTTCACAGATCAAGTGTACTAGGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00901 ko01110 map00901 map01110
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

323

Amino Acids

35.69

Weight (kDa)

8.31

Isoelectric Point (pI)

35.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 30 - 308 5.5e-25 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03980
fragaria_vesca FvH4_4g05740
prunus_persica Prupe.4G256100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0363081
rosa_laevigata RLG00000027595
rosa_multiflora Rmu_sc0004472.1_g000006
rosa_roxburghii Rroxscaffold_4G00293480
rosa_rugosa Rorug01G0304500
rosa_samantha Rh1AG313500 Rh1BG276700 Rh1CG293400 Rh1DG307400
rosa_wichuraiana Rw1G027770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 566
AccI GTMKAC 2 cut(s) 5, 705
AccIII TCCGGA 1 cut(s) 212
AciI CCGC 4 cut(s) 133, 477, 506, 786
AclWI GGATC 3 cut(s) 75, 487, 645
AcsI RAATTY 1 cut(s) 626
AcvI CACGTG 2 cut(s) 327, 457
AcyI GRCGYC 1 cut(s) 563
AfaI GTAC 1 cut(s) 961
AfiI CCNNNNNNNGG 2 cut(s) 265, 457
AflIII ACRYGT 1 cut(s) 326
AgeI ACCGGT 1 cut(s) 791
AgsI TTSAA 5 cut(s) 307, 355, 731, 775, 931
AjiI CACGTC 1 cut(s) 694
AluBI AGCT 8 cut(s) 234, 295, 444, 482, 662, 668, 770, 800
AluI AGCT 8 cut(s) 234, 295, 444, 482, 662, 668, 770, 800
Alw21I GWGCWC 1 cut(s) 891
Alw44I GTGCAC 1 cut(s) 887
AlwI GGATC 3 cut(s) 75, 487, 645
Ama87I CYCGRG 1 cut(s) 523
Aor13HI TCCGGA 1 cut(s) 212
AoxI GGCC 2 cut(s) 139, 821
ApaLI GTGCAC 1 cut(s) 887
ApeKI GCWGC 2 cut(s) 292, 479
ApoI RAATTY 1 cut(s) 626
AsiGI ACCGGT 1 cut(s) 791
AspS9I GGNCC 2 cut(s) 140, 789
AsuC2I CCSGG 2 cut(s) 524, 525
AsuHPI GGTGA 3 cut(s) 113, 389, 502
AvaI CYCGRG 1 cut(s) 523
AvaII GGWCC 1 cut(s) 789
BaeGI GKGCMC 1 cut(s) 891
BbrPI CACGTG 2 cut(s) 327, 457
Bbv12I GWGCWC 1 cut(s) 891
BbvI GCAGC 2 cut(s) 304, 491
BccI CCATC 2 cut(s) 116, 476
BceAI ACGGC 2 cut(s) 154, 349
BcnI CCSGG 2 cut(s) 524, 525
BfaI CTAG 2 cut(s) 483, 963
BfmI CTRYAG 2 cut(s) 663, 699
BisI GCNGC 3 cut(s) 293, 477, 480
BlsI GCNGC 3 cut(s) 294, 478, 481
Bme1390I CCNGG 2 cut(s) 524, 525
Bme18I GGWCC 1 cut(s) 789
BmeT110I CYCGRG 1 cut(s) 523
BmgBI CACGTC 1 cut(s) 694
BmgT120I GGNCC 2 cut(s) 140, 789
BmiI GGNNCC 2 cut(s) 466, 790
BmrFI CCNGG 2 cut(s) 524, 525
BmsI GCATC 1 cut(s) 625
BpuMI CCSGG 2 cut(s) 524, 525
BsaAI YACGTR 2 cut(s) 327, 457
BsaHI GRCGYC 1 cut(s) 563
BsaJI CCNNGG 2 cut(s) 415, 523
BsaWI WCCGGW 3 cut(s) 212, 791, 844
BsaXI ACNNNNNCTCC 6 cut(s) 95, 125, 262, 292, 831, 861
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 457
Bse118I RCCGGY 1 cut(s) 791
Bse1I ACTGG 2 cut(s) 124, 536
Bse3DI GCAATG 1 cut(s) 639
BseAI TCCGGA 1 cut(s) 212
BseDI CCNNGG 2 cut(s) 415, 523
BseGI GGATG 2 cut(s) 447, 548
BseLI CCNNNNNNNGG 2 cut(s) 265, 457
BseMI GCAATG 1 cut(s) 639
BseNI ACTGG 2 cut(s) 124, 536
BseRI GAGGAG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 891
BseXI GCAGC 2 cut(s) 304, 491
BshFI GGCC 2 cut(s) 141, 823
BshTI ACCGGT 1 cut(s) 791
BsiHKAI GWGCWC 1 cut(s) 891
BsiHKCI CYCGRG 1 cut(s) 523
BsiSI CCGG 5 cut(s) 213, 266, 524, 792, 845
BslFI GGGAC 4 cut(s) 34, 506, 802, 893
BslI CCNNNNNNNGG 2 cut(s) 265, 457
BsmFI GGGAC 4 cut(s) 34, 506, 802, 893
BsnI GGCC 2 cut(s) 141, 823
BsoBI CYCGRG 1 cut(s) 523
Bsp1286I GDGCHC 1 cut(s) 891
Bsp13I TCCGGA 1 cut(s) 212
Bsp143I GATC 4 cut(s) 67, 492, 637, 951
BspACI CCGC 4 cut(s) 133, 477, 506, 786
BspANI GGCC 2 cut(s) 141, 823
BspEI TCCGGA 1 cut(s) 212
BspLI GGNNCC 2 cut(s) 466, 790
BspPI GGATC 3 cut(s) 75, 487, 645
BspQI GCTCTTC 1 cut(s) 343
BsrDI GCAATG 1 cut(s) 639
BsrFI RCCGGY 1 cut(s) 791
BsrI ACTGG 2 cut(s) 124, 536
BssAI RCCGGY 1 cut(s) 791
BssECI CCNNGG 2 cut(s) 415, 523
BssMI GATC 4 cut(s) 67, 492, 637, 951
BssNAI GTATAC 1 cut(s) 706
BssNI GRCGYC 1 cut(s) 563
BssT1I CCWWGG 1 cut(s) 415
Bst1107I GTATAC 1 cut(s) 706
Bst4CI ACNGT 2 cut(s) 407, 605
Bst6I CTCTTC 2 cut(s) 47, 343
BstACI GRCGYC 1 cut(s) 563
BstBAI YACGTR 2 cut(s) 327, 457
BstC8I GCNNGC 1 cut(s) 297
BstDEI CTNAG 1 cut(s) 921
BstF5I GGATG 2 cut(s) 447, 548
BstKTI GATC 4 cut(s) 70, 495, 640, 954
BstMBI GATC 4 cut(s) 67, 492, 637, 951
BstMWI GCNNNNNNNGC 1 cut(s) 473
BstSCI CCNGG 2 cut(s) 522, 523
BstSFI CTRYAG 2 cut(s) 663, 699
BstSLI GKGCMC 1 cut(s) 891
BstV1I GCAGC 2 cut(s) 304, 491
BstZ17I GTATAC 1 cut(s) 706
BsuRI GGCC 2 cut(s) 141, 823
BtrI CACGTC 1 cut(s) 694
BtsCI GGATG 2 cut(s) 447, 548
BtsI GCAGTG 1 cut(s) 840
BtsIMutI CAGTG 3 cut(s) 117, 543, 840
Cac8I GCNNGC 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 791
Cfr13I GGNCC 2 cut(s) 140, 789
Cfr9I CCCGGG 1 cut(s) 523
CseI GACGC 1 cut(s) 622
Csp6I GTAC 1 cut(s) 960
CspAI ACCGGT 1 cut(s) 791
CviAII CATG 3 cut(s) 289, 370, 916
CviQI GTAC 1 cut(s) 960
DdeI CTNAG 1 cut(s) 921
DpnI GATC 4 cut(s) 69, 494, 639, 953
DpnII GATC 4 cut(s) 67, 492, 637, 951
Eam1104I CTCTTC 2 cut(s) 47, 343
EarI CTCTTC 2 cut(s) 47, 343
Eco130I CCWWGG 1 cut(s) 415
Eco47I GGWCC 1 cut(s) 789
Eco72I CACGTG 2 cut(s) 327, 457
Eco88I CYCGRG 1 cut(s) 523
EcoRI GAATTC 1 cut(s) 626
EcoT14I CCWWGG 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 3 cut(s) 292, 373, 919
FaqI GGGAC 4 cut(s) 34, 506, 802, 893
FatI CATG 3 cut(s) 288, 369, 915
FauI CCCGC 1 cut(s) 779
FblI GTMKAC 2 cut(s) 5, 705
Fnu4HI GCNGC 3 cut(s) 293, 477, 480
FokI GGATG 2 cut(s) 434, 555
Fsp4HI GCNGC 3 cut(s) 293, 477, 480
FspBI CTAG 2 cut(s) 483, 963
GluI GCNGC 3 cut(s) 293, 477, 480
HaeIII GGCC 2 cut(s) 141, 823
HapII CCGG 5 cut(s) 213, 266, 524, 792, 845
HgaI GACGC 1 cut(s) 622
Hin1I GRCGYC 1 cut(s) 563
Hin1II CATG 3 cut(s) 292, 373, 919
HincII GTYRAC 2 cut(s) 199, 511
HindII GTYRAC 2 cut(s) 199, 511
HinfI GANTC 6 cut(s) 104, 753, 856, 895, 912, 940
HpaI GTTAAC 2 cut(s) 199, 511
HpaII CCGG 5 cut(s) 213, 266, 524, 792, 845
HphI GGTGA 3 cut(s) 113, 389, 502
Hpy166II GTNNAC 6 cut(s) 6, 199, 511, 706, 889, 960
Hpy188I TCNGA 9 cut(s) 67, 115, 206, 247, 346, 440, 552, 855, 939
Hpy188III TCNNGA 3 cut(s) 213, 689, 928
Hpy8I GTNNAC 6 cut(s) 6, 199, 511, 706, 889, 960
Hpy99I CGWCG 2 cut(s) 599, 815
HpyCH4III ACNGT 2 cut(s) 407, 605
HpyCH4IV ACGT 9 cut(s) 189, 261, 319, 326, 456, 513, 563, 693, 735
HpyCH4V TGCA 2 cut(s) 292, 889
HpyF10VI GCNNNNNNNGC 1 cut(s) 473
HpyF3I CTNAG 1 cut(s) 921
HpySE526I ACGT 9 cut(s) 189, 261, 319, 326, 456, 513, 563, 693, 735
Hsp92I GRCGYC 1 cut(s) 563
Hsp92II CATG 3 cut(s) 292, 373, 919
Kpn2I TCCGGA 1 cut(s) 212
KspAI GTTAAC 2 cut(s) 199, 511
Kzo9I GATC 4 cut(s) 67, 492, 637, 951
LguI GCTCTTC 1 cut(s) 343
LmnI GCTCC 3 cut(s) 464, 797, 830
Lsp1109I GCAGC 2 cut(s) 304, 491
LweI GCATC 1 cut(s) 625
MaeI CTAG 2 cut(s) 483, 963
MaeII ACGT 9 cut(s) 189, 261, 319, 326, 456, 513, 563, 693, 735
MaeIII GTNAC 2 cut(s) 101, 329
MalI GATC 4 cut(s) 69, 494, 639, 953
MboI GATC 4 cut(s) 67, 492, 637, 951
MboII GAAGA 6 cut(s) 34, 232, 330, 333, 403, 443
MhlI GDGCHC 1 cut(s) 891
MluCI AATT 2 cut(s) 95, 626
MlyI GAGTC 2 cut(s) 98, 889
MmeI TCCRAC 2 cut(s) 138, 442
MnlI CCTC 6 cut(s) 183, 291, 380, 462, 481, 813
MroI TCCGGA 1 cut(s) 212
MseI TTAA 4 cut(s) 128, 198, 510, 970
MspI CCGG 5 cut(s) 213, 266, 524, 792, 845
MspR9I CCNGG 2 cut(s) 524, 525
MwoI GCNNNNNNNGC 1 cut(s) 473
NciI CCSGG 2 cut(s) 524, 525
NdeII GATC 4 cut(s) 67, 492, 637, 951
NlaIII CATG 3 cut(s) 292, 373, 919
NlaIV GGNNCC 2 cut(s) 466, 790
NmuCI GTSAC 2 cut(s) 101, 329
PciSI GCTCTTC 1 cut(s) 343
PfeI GAWTC 4 cut(s) 753, 856, 912, 940
PinAI ACCGGT 1 cut(s) 791
PkrI GCNGC 3 cut(s) 294, 478, 481
PleI GAGTC 2 cut(s) 98, 889
PmaCI CACGTG 2 cut(s) 327, 457
PmlI CACGTG 2 cut(s) 327, 457
PpsI GAGTC 2 cut(s) 98, 889
Ppu21I YACGTR 2 cut(s) 327, 457
PspCI CACGTG 2 cut(s) 327, 457
PspN4I GGNNCC 2 cut(s) 466, 790
PspPI GGNCC 2 cut(s) 140, 789
RsaI GTAC 1 cut(s) 961
RsaNI GTAC 1 cut(s) 960
SapI GCTCTTC 1 cut(s) 343
SaqAI TTAA 4 cut(s) 128, 198, 510, 970
SatI GCNGC 3 cut(s) 293, 477, 480
Sau3AI GATC 4 cut(s) 67, 492, 637, 951
Sau96I GGNCC 2 cut(s) 140, 789
SchI GAGTC 2 cut(s) 98, 889
ScrFI CCNGG 2 cut(s) 524, 525
SduI GDGCHC 1 cut(s) 891
SfaNI GCATC 1 cut(s) 625
SfcI CTRYAG 2 cut(s) 663, 699
SinI GGWCC 1 cut(s) 789
SmaI CCCGGG 1 cut(s) 525
Sse9I AATT 2 cut(s) 95, 626
SsiI CCGC 4 cut(s) 133, 477, 506, 786
SspMI CTAG 2 cut(s) 483, 963
StyD4I CCNGG 2 cut(s) 522, 523
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 2 cut(s) 407, 605
TaiI ACGT 9 cut(s) 192, 264, 322, 329, 459, 516, 566, 696, 738
TaqI TCGA 1 cut(s) 756
TasI AATT 2 cut(s) 95, 626
TatI WGTACW 1 cut(s) 959
TauI GCSGC 1 cut(s) 479
TfiI GAWTC 4 cut(s) 753, 856, 912, 940
Tru1I TTAA 4 cut(s) 128, 198, 510, 970
Tru9I TTAA 4 cut(s) 128, 198, 510, 970
TscAI CASTG 3 cut(s) 124, 543, 840
TseFI GTSAC 2 cut(s) 101, 329
TseI GCWGC 2 cut(s) 292, 479
Tsp45I GTSAC 2 cut(s) 101, 329
TspDTI ATGAA 6 cut(s) 47, 51, 138, 358, 859, 904
TspGWI ACGGA 5 cut(s) 485, 723, 828, 843, 897
TspMI CCCGGG 1 cut(s) 523
TspRI CASTG 3 cut(s) 124, 543, 840
VneI GTGCAC 1 cut(s) 887
VpaK11BI GGWCC 1 cut(s) 789
XapI RAATTY 1 cut(s) 626
XmaI CCCGGG 1 cut(s) 523
XmiI GTMKAC 2 cut(s) 5, 705
XspI CTAG 2 cut(s) 483, 963
ZraI GACGTC 1 cut(s) 564
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.