Rh1BG276700

Belongs to the 'GDSL' lipolytic enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0017137
Physical Location & Seq
Forward (+)
41325312 .. 41327844
2533 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG276700.1

Sequence Viewer

Length: 705 bp
ATGGCAACCAAAGCAAGCCTGTTTTTCATGCTTAGCTCCTTGTTTCTTTTTTGGAAATTAAAAGTTAACTCCTCGTTTCTTCTTCAGAATTTAAGCAATGCAGCATCATTGAAAGCTTGTAACTTGGAAGCCATATATCAATTTGGGGACTCTTTCTCCGACACCGGAAATGCGATACGTGAAAACAAAGCTCTAGAGGCTACTAAGCTCCCTTATGGCTTAAATCTTCCCAGGGAACCAAAAGGTCGATTTTCCGACGGGATGTTGGTTATAGATTTTGAAGCACAAGCAGCTGGGCTTCCATTTCTTAAACCATATTTGGATCGGGAAGCGAAAGATTACCACAACGGAAAGAACTTTGCTGTTAGTTCTGCTAGCGTTTTGCCAAAAGGTGTTCTTAAAGAGAAATCAATATTCTTCCCAGAAACAATGACAAACATTACGCTACATAAGCAAGTGGATTGGATGGCCACTTACTTCAATGAAACCCCCTATTTTAGTAAAGACCGCGCAGAGAAGCTTAAGAGGTCACTCTTTTTCATCGGACCAATGGCACATGGTGATTATATGTATTCAATGGACTTGAGTCGTAAATCTTCAGAATGGGTAAAGAGCAATTTGGTTCCAGATATCGTCCAAACCATCAAAGAAGCTGCCACAAGGGTCATTGCTTTTGGTGCTGTGAAAGTCATTTGGTTGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00901 ko01110 map00901 map01110
Pfam Domains
Protein Families
Lipase_GDSL

Protein Analysis

234

Amino Acids

26.46

Weight (kDa)

9.25

Isoelectric Point (pI)

26.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_GDSL PF00657 45 - 156 5.2e-08 GDSL-like Lipase/Acylhydrolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017137)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G03980
fragaria_vesca FvH4_4g05740
prunus_persica Prupe.4G256100_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0363081
rosa_laevigata RLG00000027595
rosa_multiflora Rmu_sc0004472.1_g000006
rosa_roxburghii Rroxscaffold_4G00293480
rosa_rugosa Rorug01G0304500
rosa_samantha Rh1AG313500 Rh1BG276700 Rh1CG293400 Rh1DG307400
rosa_wichuraiana Rw1G027770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 510
AciI CCGC 1 cut(s) 508
AclWI GGATC 1 cut(s) 330
AcoI YGGCCR 1 cut(s) 468
AcsI RAATTY 1 cut(s) 88
AcuI CTGAAG 2 cut(s) 68, 582
AdeI CACNNNGTG 1 cut(s) 560
AflII CTTAAG 1 cut(s) 521
AgsI TTSAA 4 cut(s) 112, 281, 481, 576
AjnI CCWGG 1 cut(s) 230
AluBI AGCT 7 cut(s) 36, 116, 191, 208, 293, 520, 653
AluI AGCT 7 cut(s) 36, 116, 191, 208, 293, 520, 653
AlwI GGATC 1 cut(s) 330
AoxI GGCC 1 cut(s) 468
ApeKI GCWGC 3 cut(s) 101, 290, 653
ApoI RAATTY 1 cut(s) 88
AspLEI GCGC 1 cut(s) 512
AspS9I GGNCC 1 cut(s) 545
AsuHPI GGTGA 1 cut(s) 572
AsuNHI GCTAGC 1 cut(s) 374
AvaII GGWCC 1 cut(s) 545
BalI TGGCCA 1 cut(s) 470
BbvI GCAGC 3 cut(s) 113, 302, 640
BccI CCATC 2 cut(s) 460, 650
BciT130I CCWGG 1 cut(s) 232
BfaI CTAG 2 cut(s) 194, 375
BfrI CTTAAG 1 cut(s) 521
BisI GCNGC 3 cut(s) 102, 291, 654
BlpI GCTNAGC 1 cut(s) 32
BlsI GCNGC 3 cut(s) 103, 292, 655
Bme1390I CCNGG 1 cut(s) 232
Bme18I GGWCC 1 cut(s) 545
BmgT120I GGNCC 1 cut(s) 545
BmiI GGNNCC 2 cut(s) 237, 624
BmrFI CCNGG 1 cut(s) 232
BmsI GCATC 1 cut(s) 113
BmtI GCTAGC 1 cut(s) 378
BoxI GACNNNNGTC 1 cut(s) 585
Bpu1102I GCTNAGC 1 cut(s) 32
BpuEI CTTGAG 1 cut(s) 604
BsaAI YACGTR 1 cut(s) 179
BsaJI CCNNGG 2 cut(s) 230, 231
BsaWI WCCGGW 1 cut(s) 164
BsaXI ACNNNNNCTCC 2 cut(s) 140, 170
Bse3DI GCAATG 2 cut(s) 103, 666
BseBI CCWGG 1 cut(s) 232
BseDI CCNNGG 2 cut(s) 230, 231
BseGI GGATG 2 cut(s) 267, 471
BseMI GCAATG 2 cut(s) 103, 666
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 3 cut(s) 113, 302, 640
BseYI CCCAGC 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 510
BshFI GGCC 1 cut(s) 470
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 161
BsmFI GGGAC 1 cut(s) 161
BsnI GGCC 1 cut(s) 470
Bsp143I GATC 1 cut(s) 322
Bsp1720I GCTNAGC 1 cut(s) 32
BspACI CCGC 1 cut(s) 508
BspANI GGCC 1 cut(s) 470
BspFNI CGCG 1 cut(s) 510
BspLI GGNNCC 2 cut(s) 237, 624
BspOI GCTAGC 1 cut(s) 378
BspPI GGATC 1 cut(s) 330
BspTI CTTAAG 1 cut(s) 521
BsrDI GCAATG 2 cut(s) 103, 666
BssECI CCNNGG 2 cut(s) 230, 231
BssMI GATC 1 cut(s) 322
Bst2UI CCWGG 1 cut(s) 232
BstAFI CTTAAG 1 cut(s) 521
BstBAI YACGTR 1 cut(s) 179
BstC8I GCNNGC 2 cut(s) 16, 376
BstDEI CTNAG 2 cut(s) 32, 204
BstF5I GGATG 2 cut(s) 267, 471
BstFNI CGCG 1 cut(s) 510
BstHHI GCGC 1 cut(s) 512
BstKTI GATC 1 cut(s) 325
BstMBI GATC 1 cut(s) 322
BstMWI GCNNNNNNNGC 5 cut(s) 11, 197, 290, 451, 677
BstNI CCWGG 1 cut(s) 232
BstPAI GACNNNNGTC 1 cut(s) 585
BstSCI CCNGG 1 cut(s) 230
BstUI CGCG 1 cut(s) 510
BstV1I GCAGC 3 cut(s) 113, 302, 640
BsuRI GGCC 1 cut(s) 470
BtsCI GGATG 2 cut(s) 267, 471
Cac8I GCNNGC 2 cut(s) 16, 376
CfoI GCGC 1 cut(s) 512
Cfr13I GGNCC 1 cut(s) 545
CviAII CATG 2 cut(s) 28, 557
DdeI CTNAG 2 cut(s) 32, 204
DpnI GATC 1 cut(s) 324
DpnII GATC 1 cut(s) 322
DraIII CACNNNGTG 1 cut(s) 560
EaeI YGGCCR 1 cut(s) 468
Eco32I GATATC 1 cut(s) 631
Eco47I GGWCC 1 cut(s) 545
Eco57I CTGAAG 2 cut(s) 68, 582
EcoRII CCWGG 1 cut(s) 230
EcoRV GATATC 1 cut(s) 631
FaeI CATG 2 cut(s) 31, 560
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FaqI GGGAC 1 cut(s) 161
FatI CATG 2 cut(s) 27, 556
Fnu4HI GCNGC 3 cut(s) 102, 291, 654
FokI GGATG 2 cut(s) 274, 478
Fsp4HI GCNGC 3 cut(s) 102, 291, 654
FspBI CTAG 2 cut(s) 194, 375
GlaI GCGC 1 cut(s) 511
GluI GCNGC 3 cut(s) 102, 291, 654
GsaI CCCAGC 1 cut(s) 297
HaeIII GGCC 1 cut(s) 470
HapII CCGG 1 cut(s) 165
HhaI GCGC 1 cut(s) 512
Hin1II CATG 2 cut(s) 31, 560
Hin6I GCGC 1 cut(s) 510
HinP1I GCGC 1 cut(s) 510
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HindIII AAGCTT 2 cut(s) 114, 518
HinfI GANTC 2 cut(s) 149, 586
HpaI GTTAAC 1 cut(s) 67
HpaII CCGG 1 cut(s) 165
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 5 cut(s) 87, 160, 256, 545, 601
Hpy188III TCNNGA 3 cut(s) 194, 326, 626
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 260
HpyCH4IV ACGT 1 cut(s) 178
HpyCH4V TGCA 1 cut(s) 101
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 197, 290, 451, 677
HpyF3I CTNAG 2 cut(s) 32, 204
HpySE526I ACGT 1 cut(s) 178
Hsp92II CATG 2 cut(s) 31, 560
HspAI GCGC 1 cut(s) 510
KspAI GTTAAC 1 cut(s) 67
Kzo9I GATC 1 cut(s) 322
LmnI GCTCC 2 cut(s) 41, 213
LpnPI CCDG 7 cut(s) 32, 178, 217, 244, 279, 435, 639
Lsp1109I GCAGC 3 cut(s) 113, 302, 640
LweI GCATC 1 cut(s) 113
MaeI CTAG 2 cut(s) 194, 375
MaeII ACGT 1 cut(s) 178
MaeIII GTNAC 2 cut(s) 119, 528
MalI GATC 1 cut(s) 324
MboI GATC 1 cut(s) 322
MboII GAAGA 5 cut(s) 71, 74, 218, 409, 588
MlsI TGGCCA 1 cut(s) 470
MluCI AATT 4 cut(s) 56, 88, 140, 616
MluNI TGGCCA 1 cut(s) 470
MlyI GAGTC 2 cut(s) 143, 595
MmeI TCCRAC 2 cut(s) 183, 279
MnlI CCTC 3 cut(s) 82, 190, 519
Mox20I TGGCCA 1 cut(s) 470
MscI TGGCCA 1 cut(s) 470
MseI TTAA 8 cut(s) 59, 66, 92, 221, 309, 399, 522, 703
Msp20I TGGCCA 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 293
MspCI CTTAAG 1 cut(s) 521
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 232
MvaI CCWGG 1 cut(s) 232
MvnI CGCG 1 cut(s) 510
MwoI GCNNNNNNNGC 5 cut(s) 11, 197, 290, 451, 677
NdeII GATC 1 cut(s) 322
NheI GCTAGC 1 cut(s) 374
NlaIII CATG 2 cut(s) 31, 560
NlaIV GGNNCC 2 cut(s) 237, 624
NmuCI GTSAC 1 cut(s) 528
PasI CCCWGGG 1 cut(s) 231
PkrI GCNGC 3 cut(s) 103, 292, 655
PleI GAGTC 2 cut(s) 143, 594
PpsI GAGTC 2 cut(s) 143, 594
Ppu21I YACGTR 1 cut(s) 179
PshAI GACNNNNGTC 1 cut(s) 585
Psp6I CCWGG 1 cut(s) 230
PspFI CCCAGC 1 cut(s) 293
PspGI CCWGG 1 cut(s) 230
PspN4I GGNNCC 2 cut(s) 237, 624
PspPI GGNCC 1 cut(s) 545
PvuII CAGCTG 1 cut(s) 293
SaqAI TTAA 8 cut(s) 59, 66, 92, 221, 309, 399, 522, 703
SatI GCNGC 3 cut(s) 102, 291, 654
Sau3AI GATC 1 cut(s) 322
Sau96I GGNCC 1 cut(s) 545
SchI GAGTC 2 cut(s) 143, 595
ScrFI CCNGG 1 cut(s) 232
SfaNI GCATC 1 cut(s) 113
SinI GGWCC 1 cut(s) 545
SmlI CTYRAG 2 cut(s) 521, 583
SmoI CTYRAG 2 cut(s) 521, 583
Sse9I AATT 4 cut(s) 56, 88, 140, 616
SsiI CCGC 1 cut(s) 508
SspI AATATT 1 cut(s) 414
SspMI CTAG 2 cut(s) 194, 375
StyD4I CCNGG 1 cut(s) 230
TaiI ACGT 1 cut(s) 181
TaqI TCGA 1 cut(s) 247
TasI AATT 4 cut(s) 56, 88, 140, 616
Tru1I TTAA 8 cut(s) 59, 66, 92, 221, 309, 399, 522, 703
Tru9I TTAA 8 cut(s) 59, 66, 92, 221, 309, 399, 522, 703
TseFI GTSAC 1 cut(s) 528
TseI GCWGC 3 cut(s) 101, 290, 653
Tsp45I GTSAC 1 cut(s) 528
TspDTI ATGAA 3 cut(s) 16, 498, 529
TspGWI ACGGA 1 cut(s) 363
Vha464I CTTAAG 1 cut(s) 521
VpaK11BI GGWCC 1 cut(s) 545
XapI RAATTY 1 cut(s) 88
XbaI TCTAGA 1 cut(s) 193
XspI CTAG 2 cut(s) 194, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.