Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015419

Physical Location & Seq

Genomic Coordinates Reverse (-)

1401983 .. 1404136

Gene Structure 2154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G04830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGATCCAGCGCGGGAATGCGAAGGCAAAGGAGCTTGCGAATTGAAATCGAACAAGCGATTTGCTGATAAAATCATGCCTCATCTTCTCAACTTGTACGGGTCTAGTGCAAAAGCCAACGATTTTGACATGTATGCACCAAATGCTTCATTTGAAGACCCTTTGACGCATGCTCAGGGAGTGAAGCAGATCAAATCAGCATTTTATTCACTCCCTAAGGTGTTTGGTGAGTCGAAAATAGTTGAATATCATATTCAAGAAAGTGAAACCTCGCCGGGGAAGAAAGAGATACTAATTGACAACAAACAACACTACAAGATCATGGGAAGGAACATAGATATGATCTCTCTCATTAAGCTCTATGTCGAGGACGGGAAGATCGTTCGACATGAAGACTGGTGGGACAAGAAACCTCTGAGGAACAGAGACACGGTTAGCTTTCCATTAGTCGGACGGGTAATGGAGATGGGTCGAAGAGGCTTGATGCTAGCGACTCATGCCATGATGGGTTTTGGTAAAGATCCTGACTCCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

20.29

Weight (kDa)

8.43

Isoelectric Point (pI)

50.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04830 AT5G04830
malus_domestica	MD07G1062000.v1.1
prunus_persica	Prupe.2G071800_v2.0.a1
pyrus_communis	pycom07g04740
rosa_chinensis	RchiOBHm_Chr1g0331851
rosa_laevigata	RLG00000029708
rosa_multiflora	Rmu_sc0000523.1_g000004
rosa_roxburghii	Rroxscaffold_4G00318630
rosa_rugosa	Rorug01G0096800 Rorug01G0096800
rosa_samantha	Rh1AG120900 Rh1BG092400 Rh1CG115700 Rh1DG126800
rosa_wichuraiana	Rw1G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	13
AciI	CCGC	1 cut(s)	13
AclWI	GGATC	2 cut(s)	12, 515
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	2 cut(s)	276, 449
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	4 cut(s)	46, 155, 245, 257
AluBI	AGCT	3 cut(s)	35, 358, 438
AluI	AGCT	3 cut(s)	35, 358, 438
Alw26I	GTCTC	1 cut(s)	420
AlwI	GGATC	2 cut(s)	12, 515
AspLEI	GCGC	1 cut(s)	13
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	239
AsuNHI	GCTAGC	1 cut(s)	487
AxyI	CCTNAGG	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	4
BbsI	GAAGAC	2 cut(s)	162, 399
BccI	CCATC	2 cut(s)	460, 499
BcnI	CCSGG	1 cut(s)	276
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	2 cut(s)	105, 488
Bme1390I	CCNGG	1 cut(s)	276
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	1 cut(s)	474
BmtI	GCTAGC	1 cut(s)	491
BpiI	GAAGAC	2 cut(s)	162, 399
Bpu10I	CCTNAGC	1 cut(s)	174
BpuMI	CCSGG	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 449
Bse1I	ACTGG	1 cut(s)	401
Bse21I	CCTNAGG	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	275
BseLI	CCNNNNNNNGG	2 cut(s)	276, 449
BseMII	CTCAG	2 cut(s)	188, 407
BseNI	ACTGG	1 cut(s)	401
Bsh1236I	CGCG	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	276, 449
BsmAI	GTCTC	1 cut(s)	420
BsmFI	GGGAC	1 cut(s)	416
BsmI	GAATGC	1 cut(s)	23
Bsp143I	GATC	6 cut(s)	4, 189, 318, 342, 378, 520
BspACI	CCGC	1 cut(s)	13
BspCNI	CTCAG	2 cut(s)	187, 408
BspFNI	CGCG	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	491
BspPI	GGATC	2 cut(s)	12, 515
BsrI	ACTGG	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	275
BssMI	GATC	6 cut(s)	4, 189, 318, 342, 378, 520
Bst4CI	ACNGT	1 cut(s)	433
Bst6I	CTCTTC	1 cut(s)	469
BstAPI	GCANNNNNTGC	1 cut(s)	143
BstC8I	GCNNGC	3 cut(s)	37, 171, 489
BstDEI	CTNAG	3 cut(s)	174, 216, 416
BstFNI	CGCG	1 cut(s)	13
BstHHI	GCGC	1 cut(s)	13
BstKTI	GATC	6 cut(s)	7, 192, 321, 345, 381, 523
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	6 cut(s)	4, 189, 318, 342, 378, 520
BstMWI	GCNNNNNNNGC	2 cut(s)	143, 497
BstNSI	RCATGY	2 cut(s)	133, 173
BstSCI	CCNGG	1 cut(s)	274
BstUI	CGCG	1 cut(s)	13
BstV2I	GAAGAC	2 cut(s)	162, 399
BstX2I	RGATCY	2 cut(s)	4, 520
BstYI	RGATCY	2 cut(s)	4, 520
Bsu36I	CCTNAGG	1 cut(s)	216
Cac8I	GCNNGC	3 cut(s)	37, 171, 489
CfoI	GCGC	1 cut(s)	13
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	1 cut(s)	97
CviAII	CATG	7 cut(s)	76, 130, 170, 322, 389, 497, 502
CviJI	RGCY	5 cut(s)	35, 116, 358, 438, 480
CviKI_1	RGCY	5 cut(s)	35, 116, 358, 438, 480
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	3 cut(s)	174, 216, 416
DpnI	GATC	6 cut(s)	6, 191, 320, 344, 380, 522
DpnII	GATC	6 cut(s)	4, 189, 318, 342, 378, 520
Eam1104I	CTCTTC	1 cut(s)	469
EarI	CTCTTC	1 cut(s)	469
Eco81I	CCTNAGG	1 cut(s)	216
FaeI	CATG	7 cut(s)	79, 133, 173, 325, 392, 500, 505
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	7 cut(s)	75, 129, 169, 321, 388, 496, 501
FauI	CCCGC	1 cut(s)	6
FspBI	CTAG	2 cut(s)	105, 488
GlaI	GCGC	1 cut(s)	12
HapII	CCGG	1 cut(s)	275
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	13
Hin1II	CATG	7 cut(s)	79, 133, 173, 325, 392, 500, 505
Hin6I	GCGC	1 cut(s)	11
HinP1I	GCGC	1 cut(s)	11
HinfI	GANTC	3 cut(s)	230, 493, 527
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	239
Hpy188I	TCNGA	2 cut(s)	417, 452
Hpy188III	TCNNGA	2 cut(s)	257, 524
HpyAV	CCTTC	2 cut(s)	17, 321
HpyCH4III	ACNGT	1 cut(s)	433
HpyCH4V	TGCA	2 cut(s)	110, 137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	143, 497
HpyF3I	CTNAG	3 cut(s)	174, 216, 416
Hsp92II	CATG	7 cut(s)	79, 133, 173, 325, 392, 500, 505
HspAI	GCGC	1 cut(s)	11
Kzo9I	GATC	6 cut(s)	4, 189, 318, 342, 378, 520
LmnI	GCTCC	1 cut(s)	32
LpnPI	CCDG	4 cut(s)	21, 161, 288, 382
LweI	GCATC	1 cut(s)	474
MaeI	CTAG	2 cut(s)	105, 488
MalI	GATC	6 cut(s)	6, 191, 320, 344, 380, 522
MboI	GATC	6 cut(s)	4, 189, 318, 342, 378, 520
MboII	GAAGA	6 cut(s)	77, 167, 292, 388, 404, 486
MflI	RGATCY	2 cut(s)	4, 520
MluCI	AATT	2 cut(s)	41, 294
MlyI	GAGTC	3 cut(s)	239, 487, 521
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	6 cut(s)	90, 280, 361, 411, 423, 470
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	338
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	276
Mva1269I	GAATGC	1 cut(s)	23
MvnI	CGCG	1 cut(s)	13
MwoI	GCNNNNNNNGC	2 cut(s)	143, 497
NciI	CCSGG	1 cut(s)	276
NdeII	GATC	6 cut(s)	4, 189, 318, 342, 378, 520
NheI	GCTAGC	1 cut(s)	487
NlaIII	CATG	7 cut(s)	79, 133, 173, 325, 392, 500, 505
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	2 cut(s)	133, 173
PaeI	GCATGC	1 cut(s)	173
PciI	ACATGT	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PctI	GAATGC	1 cut(s)	23
PleI	GAGTC	3 cut(s)	238, 487, 521
PpsI	GAGTC	3 cut(s)	238, 487, 521
PscI	ACATGT	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	2 cut(s)	4, 520
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	1 cut(s)	338
SaqAI	TTAA	1 cut(s)	354
Sau3AI	GATC	6 cut(s)	4, 189, 318, 342, 378, 520
SchI	GAGTC	3 cut(s)	239, 487, 521
ScrFI	CCNGG	1 cut(s)	276
SetI	ASST	6 cut(s)	37, 222, 272, 360, 415, 440
SfaNI	GCATC	1 cut(s)	474
SmiMI	CAYNNNNRTG	1 cut(s)	338
SphI	GCATGC	1 cut(s)	173
Sse9I	AATT	2 cut(s)	41, 294
SsiI	CCGC	1 cut(s)	13
SspMI	CTAG	2 cut(s)	105, 488
StyD4I	CCNGG	1 cut(s)	274
TaaI	ACNGT	1 cut(s)	433
TaqI	TCGA	5 cut(s)	50, 233, 366, 385, 472
TasI	AATT	2 cut(s)	41, 294
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TspDTI	ATGAA	2 cut(s)	138, 405
XceI	RCATGY	2 cut(s)	133, 173
XspI	CTAG	2 cut(s)	105, 488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.