Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000523.1

Orthogroup ID

OG0015419

Physical Location & Seq

Genomic Coordinates Reverse (-)

55828 .. 58804

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000523.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

atgtcccagcacaggttacctaacaagtttgtattgaatcattccagatatgggtctcgtgcaacaccttccgactttgaaatttatgctccaaatgcttcatttgaggacccactgatgcgtgctcaagggttgaagcagatcaagtcagcattttattcactatccaaggttttcagtgaatcaagaattgtggaatacaacatccaagaaaatatgctttctcccgaaaatcatgagatattgatcgataacaaacaatactacaaattctttggaagagacataaatgtgacgtcactcatcaagttgtatgccttggaaggaaaaattgttcgtcacgaagattggtgggagaagaagcctcttttgaacagagaaacagttaaattaccactgatgggccgaattatggaactgagtcgtagaggttcaatgctggcaactcatgttatgatggggtttgggaaggacccataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

18.6

Weight (kDa)

9.42

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015419)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04830 AT5G04830
malus_domestica	MD07G1062000.v1.1
prunus_persica	Prupe.2G071800_v2.0.a1
pyrus_communis	pycom07g04740
rosa_chinensis	RchiOBHm_Chr1g0331851
rosa_laevigata	RLG00000029708
rosa_multiflora	Rmu_sc0000523.1_g000004
rosa_roxburghii	Rroxscaffold_4G00318630
rosa_rugosa	Rorug01G0096800 Rorug01G0096800
rosa_samantha	Rh1AG120900 Rh1BG092400 Rh1CG115700 Rh1DG126800
rosa_wichuraiana	Rw1G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	299
AcsI	RAATTY	2 cut(s)	81, 269
AcyI	GRCGYC	1 cut(s)	296
AfiI	CCNNNNNNNGG	4 cut(s)	12, 51, 401, 412
AgsI	TTSAA	5 cut(s)	37, 80, 136, 373, 435
AloI	GAACNNNNNNTCC	2 cut(s)	318, 350
Alw21I	GWGCWC	1 cut(s)	127
Alw26I	GTCTC	2 cut(s)	60, 276
AoxI	GGCC	1 cut(s)	403
ApoI	RAATTY	2 cut(s)	81, 269
AspS9I	GGNCC	3 cut(s)	109, 403, 472
AvaII	GGWCC	2 cut(s)	109, 472
BauI	CACGAG	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	127
BccI	CCATC	2 cut(s)	394, 451
BcoDI	GTCTC	2 cut(s)	60, 276
Bme18I	GGWCC	2 cut(s)	109, 472
BmgT120I	GGNCC	3 cut(s)	109, 403, 472
BmiI	GGNNCC	2 cut(s)	111, 474
BmsI	GCATC	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	111
Bsa29I	ATCGAT	1 cut(s)	249
BsaBI	GATNNNNATC	1 cut(s)	245
BsaHI	GRCGYC	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	60
BsaJI	CCNNGG	2 cut(s)	168, 318
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 51, 401, 412
Bse8I	GATNNNNATC	1 cut(s)	245
BseCI	ATCGAT	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	168, 318
BseGI	GGATG	1 cut(s)	204
BseJI	GATNNNNATC	1 cut(s)	245
BseLI	CCNNNNNNNGG	4 cut(s)	12, 51, 401, 412
BseMII	CTCAG	1 cut(s)	410
BseYI	CCCAGC	1 cut(s)	6
BshFI	GGCC	1 cut(s)	405
BshVI	ATCGAT	1 cut(s)	249
BsiHKAI	GWGCWC	1 cut(s)	127
BslI	CCNNNNNNNGG	4 cut(s)	12, 51, 401, 412
BsmAI	GTCTC	2 cut(s)	60, 276
BsnI	GGCC	1 cut(s)	405
Bso31I	GGTCTC	1 cut(s)	60
Bsp1286I	GDGCHC	1 cut(s)	127
Bsp143I	GATC	2 cut(s)	141, 246
BspANI	GGCC	1 cut(s)	405
BspCNI	CTCAG	1 cut(s)	411
BspDI	ATCGAT	1 cut(s)	249
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	2 cut(s)	111, 474
BspTNI	GGTCTC	1 cut(s)	60
BssECI	CCNNGG	2 cut(s)	168, 318
BssMI	GATC	2 cut(s)	141, 246
BssNI	GRCGYC	1 cut(s)	296
BssSI	CACGAG	1 cut(s)	57
BssT1I	CCWWGG	2 cut(s)	168, 318
Bst2BI	CACGAG	1 cut(s)	57
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	1 cut(s)	274
BstACI	GRCGYC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	123, 441
BstDEI	CTNAG	1 cut(s)	419
BstEII	GGTNACC	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	204
BstKTI	GATC	2 cut(s)	144, 249
BstMAI	GTCTC	2 cut(s)	60, 276
BstMBI	GATC	2 cut(s)	141, 246
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstPI	GGTNACC	1 cut(s)	15
Bsu15I	ATCGAT	1 cut(s)	249
BsuRI	GGCC	1 cut(s)	405
BsuTUI	ATCGAT	1 cut(s)	249
BtsCI	GGATG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	113, 184, 395
Cac8I	GCNNGC	2 cut(s)	123, 441
CciI	TCATGA	1 cut(s)	235
Cfr13I	GGNCC	3 cut(s)	109, 403, 472
ClaI	ATCGAT	1 cut(s)	249
CspCI	CAANNNNNGTGG	2 cut(s)	174, 209
CviAII	CATG	2 cut(s)	236, 449
CviJI	RGCY	2 cut(s)	364, 405
CviKI_1	RGCY	2 cut(s)	364, 405
DdeI	CTNAG	1 cut(s)	419
DpnI	GATC	2 cut(s)	143, 248
DpnII	GATC	2 cut(s)	141, 246
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
Eco130I	CCWWGG	2 cut(s)	168, 318
Eco31I	GGTCTC	1 cut(s)	60
Eco47I	GGWCC	2 cut(s)	109, 472
Eco91I	GGTNACC	1 cut(s)	15
EcoO109I	RGGNCCY	2 cut(s)	109, 472
EcoO65I	GGTNACC	1 cut(s)	15
EcoT14I	CCWWGG	2 cut(s)	168, 318
ErhI	CCWWGG	2 cut(s)	168, 318
FaeI	CATG	2 cut(s)	239, 452
FatI	CATG	2 cut(s)	235, 448
FokI	GGATG	1 cut(s)	191
GsaI	CCCAGC	1 cut(s)	10
HaeIII	GGCC	1 cut(s)	405
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	2 cut(s)	239, 452
HinfI	GANTC	3 cut(s)	37, 182, 421
Hpy188I	TCNGA	1 cut(s)	73
Hpy188III	TCNNGA	5 cut(s)	45, 186, 227, 236, 341
HpyAV	CCTTC	3 cut(s)	78, 317, 463
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4IV	ACGT	1 cut(s)	296
HpyCH4V	TGCA	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	419
HpySE526I	ACGT	1 cut(s)	296
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	2 cut(s)	239, 452
Kzo9I	GATC	2 cut(s)	141, 246
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	3 cut(s)	20, 58, 425
LweI	GCATC	1 cut(s)	108
MaeII	ACGT	1 cut(s)	296
MaeIII	GTNAC	4 cut(s)	15, 292, 297, 338
MalI	GATC	2 cut(s)	143, 248
MboI	GATC	2 cut(s)	141, 246
MboII	GAAGA	3 cut(s)	291, 356, 370
MhlI	GDGCHC	1 cut(s)	127
MluCI	AATT	6 cut(s)	81, 189, 269, 330, 389, 408
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	3 cut(s)	100, 375, 422
MseI	TTAA	1 cut(s)	387
MslI	CAYNNNNRTG	1 cut(s)	290
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	2 cut(s)	141, 246
NlaIII	CATG	2 cut(s)	239, 452
NlaIV	GGNNCC	2 cut(s)	111, 474
NmuCI	GTSAC	3 cut(s)	292, 297, 338
PagI	TCATGA	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	37, 182
PleI	GAGTC	1 cut(s)	429
PpsI	GAGTC	1 cut(s)	429
PpuMI	RGGWCCY	2 cut(s)	109, 472
Psp5II	RGGWCCY	2 cut(s)	109, 472
PspEI	GGTNACC	1 cut(s)	15
PspFI	CCCAGC	1 cut(s)	6
PspN4I	GGNNCC	2 cut(s)	111, 474
PspPI	GGNCC	3 cut(s)	109, 403, 472
PspPPI	RGGWCCY	2 cut(s)	109, 472
RseI	CAYNNNNRTG	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	387
Sau3AI	GATC	2 cut(s)	141, 246
Sau96I	GGNCC	3 cut(s)	109, 403, 472
SchI	GAGTC	1 cut(s)	430
SduI	GDGCHC	1 cut(s)	127
SetI	ASST	6 cut(s)	17, 22, 70, 174, 299, 433
SfaNI	GCATC	1 cut(s)	108
SinI	GGWCC	2 cut(s)	109, 472
SmiMI	CAYNNNNRTG	1 cut(s)	290
SmlI	CTYRAG	1 cut(s)	126
SmoI	CTYRAG	1 cut(s)	126
Sse9I	AATT	6 cut(s)	81, 189, 269, 330, 389, 408
StyI	CCWWGG	2 cut(s)	168, 318
TaaI	ACNGT	1 cut(s)	385
TaiI	ACGT	1 cut(s)	299
TaqI	TCGA	1 cut(s)	249
TasI	AATT	6 cut(s)	81, 189, 269, 330, 389, 408
TfiI	GAWTC	2 cut(s)	37, 182
Tru1I	TTAA	1 cut(s)	387
Tru9I	TTAA	1 cut(s)	387
TscAI	CASTG	3 cut(s)	120, 184, 402
TseFI	GTSAC	3 cut(s)	292, 297, 338
Tsp45I	GTSAC	3 cut(s)	292, 297, 338
TspDTI	ATGAA	1 cut(s)	90
TspRI	CASTG	3 cut(s)	120, 184, 402
VpaK11BI	GGWCC	2 cut(s)	109, 472
XapI	RAATTY	2 cut(s)	81, 269
ZraI	GACGTC	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.