pycom07g04740

Nuclear transport factor 2 (NTF2) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0015419
Physical Location & Seq
Reverse (-)
4058647 .. 4062063
3417 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g04740.1

Sequence Viewer

Length: 603 bp
ATGGAGAAGCATCCGCAAGGAAAGGAAAAGGAAAAGGAAGGGAGTCAGAGTCAGACGAAGAAGGAAGGCAGGTGTGAATTTATTTCAGGAAAGCAGGACGGCGTTTCAGCTTCTGTTCATGATGATATCATTCTTCACATTCTTAAACTATACGGGTCCTGTGCAACGCCTTCCGACTTTGAAATCTACTCTCCAAATGCTTCCTTTGAGGACCCACTGATGTGCGCTCGTGGGTTGAAACAGATCAAATCGGCATTTTATTCACTTCCCAAGGTCTTTAGTGAATCAAGAATTGTGGAATACAGCGTCAAAGAAAATATGGTTTCACCTGGAAATCACGAGATATGGGTTGATAACAAGCAACACTACAAGTTCATGGGGAAAGACATAGATATGATATCCCTCATCAAATTGTCTGTTTTGGAAGGAAAAGTCGTTCGCCATGAAGATTGGTGGGACAAGAAGCCTCTTTCAAACAGAGAAACGGTGAAGGTGCCGCTGCTTGGCCGGATTTTGGAAATGGCTCGTAGGGGTTCAATGCTGGCAACTCATGTTATGATGGGGTTTGGGAAGGATCCACCCAATTCCACGCCTACAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.67

Weight (kDa)

8.64

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04830 AT5G04830
malus_domestica MD07G1062000.v1.1
prunus_persica Prupe.2G071800_v2.0.a1
pyrus_communis pycom07g04740
rosa_chinensis RchiOBHm_Chr1g0331851
rosa_laevigata RLG00000029708
rosa_multiflora Rmu_sc0000523.1_g000004
rosa_roxburghii Rroxscaffold_4G00318630
rosa_rugosa Rorug01G0096800 Rorug01G0096800
rosa_samantha Rh1AG120900 Rh1BG092400 Rh1CG115700 Rh1DG126800
rosa_wichuraiana Rw1G009830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 60
Acc36I ACCTGC 1 cut(s) 60
AccB1I GGYRCC 1 cut(s) 493
AciI CCGC 2 cut(s) 14, 497
AclWI GGATC 2 cut(s) 569, 582
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 1 cut(s) 77
AfiI CCNNNNNNNGG 2 cut(s) 503, 514
AgsI TTSAA 4 cut(s) 182, 238, 474, 537
AjnI CCWGG 1 cut(s) 328
AleI CACNNNNGTG 1 cut(s) 220
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
AlwI GGATC 2 cut(s) 569, 582
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 1 cut(s) 505
ApeKI GCWGC 1 cut(s) 499
ApoI RAATTY 1 cut(s) 77
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 2 cut(s) 156, 211
AsuHPI GGTGA 2 cut(s) 318, 499
AvaII GGWCC 2 cut(s) 156, 211
BamHI GGATCC 1 cut(s) 574
BanI GGYRCC 1 cut(s) 493
BauI CACGAG 2 cut(s) 228, 338
BbvI GCAGC 1 cut(s) 486
BccI CCATC 1 cut(s) 553
BceAI ACGGC 1 cut(s) 115
BciT130I CCWGG 1 cut(s) 330
BfuAI ACCTGC 1 cut(s) 60
BisI GCNGC 2 cut(s) 497, 500
BlsI GCNGC 2 cut(s) 498, 501
Bme1390I CCNGG 1 cut(s) 330
Bme18I GGWCC 2 cut(s) 156, 211
BmgT120I GGNCC 2 cut(s) 156, 211
BmiI GGNNCC 4 cut(s) 157, 213, 495, 576
BmrFI CCNGG 1 cut(s) 330
BmsI GCATC 1 cut(s) 19
BsaJI CCNNGG 1 cut(s) 270
BsaXI ACNNNNNCTCC 2 cut(s) 34, 64
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 514
BseBI CCWGG 1 cut(s) 330
BseDI CCNNGG 1 cut(s) 270
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 503, 514
BseXI GCAGC 1 cut(s) 486
BshFI GGCC 1 cut(s) 507
BshNI GGYRCC 1 cut(s) 493
BsiSI CCGG 1 cut(s) 508
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 2 cut(s) 503, 514
BsmFI GGGAC 1 cut(s) 470
BsnI GGCC 1 cut(s) 507
Bsp143I GATC 2 cut(s) 243, 574
BspACI CCGC 2 cut(s) 14, 497
BspANI GGCC 1 cut(s) 507
BspHI TCATGA 1 cut(s) 118
BspLI GGNNCC 4 cut(s) 157, 213, 495, 576
BspMI ACCTGC 1 cut(s) 60
BspPI GGATC 2 cut(s) 569, 582
BspT107I GGYRCC 1 cut(s) 493
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 2 cut(s) 243, 574
BssSI CACGAG 2 cut(s) 228, 338
BssT1I CCWWGG 1 cut(s) 270
Bst2BI CACGAG 2 cut(s) 228, 338
Bst2UI CCWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 487
BstC8I GCNNGC 1 cut(s) 543
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 2 cut(s) 246, 577
BstMBI GATC 2 cut(s) 243, 574
BstNI CCWGG 1 cut(s) 330
BstSCI CCNGG 1 cut(s) 328
BstV1I GCAGC 1 cut(s) 486
BstX2I RGATCY 1 cut(s) 574
BstYI RGATCY 1 cut(s) 574
BsuRI GGCC 1 cut(s) 507
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 215
BveI ACCTGC 1 cut(s) 60
Cac8I GCNNGC 1 cut(s) 543
CaiI CAGNNNCTG 1 cut(s) 113
CciI TCATGA 1 cut(s) 118
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 2 cut(s) 156, 211
CseI GACGC 1 cut(s) 295
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviAII CATG 4 cut(s) 119, 376, 443, 551
CviJI RGCY 4 cut(s) 110, 466, 507, 524
CviKI_1 RGCY 4 cut(s) 110, 466, 507, 524
DpnI GATC 2 cut(s) 245, 576
DpnII GATC 2 cut(s) 243, 574
EaeI YGGCCR 1 cut(s) 505
Eco130I CCWWGG 1 cut(s) 270
Eco32I GATATC 2 cut(s) 127, 399
Eco47I GGWCC 2 cut(s) 156, 211
EcoO109I RGGNCCY 2 cut(s) 156, 211
EcoRII CCWGG 1 cut(s) 328
EcoRV GATATC 2 cut(s) 127, 399
EcoT14I CCWWGG 1 cut(s) 270
ErhI CCWWGG 1 cut(s) 270
FaeI CATG 4 cut(s) 122, 379, 446, 554
FaqI GGGAC 1 cut(s) 470
FatI CATG 4 cut(s) 118, 375, 442, 550
Fnu4HI GCNGC 2 cut(s) 497, 500
Fsp4HI GCNGC 2 cut(s) 497, 500
GlaI GCGC 1 cut(s) 226
GluI GCNGC 2 cut(s) 497, 500
HaeIII GGCC 1 cut(s) 507
HapII CCGG 1 cut(s) 508
HgaI GACGC 1 cut(s) 295
HhaI GCGC 1 cut(s) 227
Hin1II CATG 4 cut(s) 122, 379, 446, 554
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 3 cut(s) 43, 49, 284
HpaII CCGG 1 cut(s) 508
HphI GGTGA 2 cut(s) 318, 499
Hpy188I TCNGA 3 cut(s) 48, 54, 175
Hpy188III TCNNGA 4 cut(s) 87, 119, 288, 338
HpyAV CCTTC 7 cut(s) 32, 55, 59, 180, 419, 484, 565
HpyCH4III ACNGT 1 cut(s) 487
HpyCH4V TGCA 1 cut(s) 164
Hsp92II CATG 4 cut(s) 122, 379, 446, 554
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 2 cut(s) 243, 574
LpnPI CCDG 8 cut(s) 55, 72, 80, 172, 315, 342, 521, 527
Lsp1109I GCAGC 1 cut(s) 486
LweI GCATC 1 cut(s) 19
MalI GATC 2 cut(s) 245, 576
MboI GATC 2 cut(s) 243, 574
MboII GAAGA 3 cut(s) 70, 125, 458
MflI RGATCY 1 cut(s) 574
MluCI AATT 4 cut(s) 77, 291, 410, 583
MlyI GAGTC 2 cut(s) 52, 58
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 3 cut(s) 202, 413, 477
MseI TTAA 1 cut(s) 144
MslI CAYNNNNRTG 2 cut(s) 220, 392
MspA1I CMGCKG 1 cut(s) 499
MspI CCGG 1 cut(s) 508
MspR9I CCNGG 1 cut(s) 330
MvaI CCWGG 1 cut(s) 330
NdeII GATC 2 cut(s) 243, 574
NlaIII CATG 4 cut(s) 122, 379, 446, 554
NlaIV GGNNCC 4 cut(s) 157, 213, 495, 576
OliI CACNNNNGTG 1 cut(s) 220
PagI TCATGA 1 cut(s) 118
PaqCI CACCTGC 1 cut(s) 60
PfeI GAWTC 1 cut(s) 284
PkrI GCNGC 2 cut(s) 498, 501
PleI GAGTC 2 cut(s) 51, 57
PpsI GAGTC 2 cut(s) 51, 57
PpuMI RGGWCCY 2 cut(s) 156, 211
Psp5II RGGWCCY 2 cut(s) 156, 211
Psp6I CCWGG 1 cut(s) 328
PspGI CCWGG 1 cut(s) 328
PspN4I GGNNCC 4 cut(s) 157, 213, 495, 576
PspPI GGNCC 2 cut(s) 156, 211
PspPPI RGGWCCY 2 cut(s) 156, 211
PstNI CAGNNNCTG 1 cut(s) 113
PsuI RGATCY 1 cut(s) 574
RseI CAYNNNNRTG 2 cut(s) 220, 392
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 2 cut(s) 497, 500
Sau3AI GATC 2 cut(s) 243, 574
Sau96I GGNCC 2 cut(s) 156, 211
SchI GAGTC 2 cut(s) 52, 58
ScrFI CCNGG 1 cut(s) 330
SetI ASST 5 cut(s) 74, 112, 276, 331, 495
SfaNI GCATC 1 cut(s) 19
SinI GGWCC 2 cut(s) 156, 211
SmiMI CAYNNNNRTG 2 cut(s) 220, 392
Sse9I AATT 4 cut(s) 77, 291, 410, 583
SsiI CCGC 2 cut(s) 14, 497
StyD4I CCNGG 1 cut(s) 328
StyI CCWWGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 487
TasI AATT 4 cut(s) 77, 291, 410, 583
TauI GCSGC 1 cut(s) 499
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 222
TseI GCWGC 1 cut(s) 499
TspDTI ATGAA 3 cut(s) 107, 364, 459
TspRI CASTG 1 cut(s) 222
VpaK11BI GGWCC 2 cut(s) 156, 211
XapI RAATTY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.