Rh1CG115700

Nuclear transport factor 2 (NTF2) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0015419
Physical Location & Seq
Forward (+)
25016634 .. 25018872
2239 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG115700.1

Sequence Viewer

Length: 369 bp
ATGAGTCACTACTTTCCCTCGTTAATACTCGTCTTCTCCTTTTCTGAACTCTTGAAACTCAGAGTGAATTCTTTTACACTTCCAAATTGCTGTCGTATCATACCGACCATGGAAAAAAATCCAGAAGCACGAGAGACAATGGATGCATATGAGACGAGAGAAGCTTGCTGCAAAGGCGCATGCGAATCAAGTTCAAGAAAGCGTCTTGCTGATGACATAATTCCTCACATTCTCAATCTATATGGGTCTCGTGCAACACCTTCCGACTTTGAAATTTATGCTCCAAATGCTTCATTTGAGGACCCACTGATGCGTGCTCAAGGGTACCCTAATTGTGAGAAACAAAATCGGTACTGTATGCATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.04

Weight (kDa)

6.28

Isoelectric Point (pI)

61.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04830 AT5G04830
malus_domestica MD07G1062000.v1.1
prunus_persica Prupe.2G071800_v2.0.a1
pyrus_communis pycom07g04740
rosa_chinensis RchiOBHm_Chr1g0331851
rosa_laevigata RLG00000029708
rosa_multiflora Rmu_sc0000523.1_g000004
rosa_roxburghii Rroxscaffold_4G00318630
rosa_rugosa Rorug01G0096800 Rorug01G0096800
rosa_samantha Rh1AG120900 Rh1BG092400 Rh1CG115700 Rh1DG126800
rosa_wichuraiana Rw1G009830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 324
AccB1I GGYRCC 1 cut(s) 324
AcsI RAATTY 2 cut(s) 67, 273
AfaI GTAC 2 cut(s) 326, 353
AgsI TTSAA 3 cut(s) 55, 195, 272
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 3 cut(s) 128, 146, 252
ApeKI GCWGC 1 cut(s) 168
ApoI RAATTY 2 cut(s) 67, 273
Asp718I GGTACC 1 cut(s) 324
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 1 cut(s) 301
AvaII GGWCC 1 cut(s) 301
BanI GGYRCC 1 cut(s) 324
BauI CACGAG 2 cut(s) 129, 249
BbsI GAAGAC 1 cut(s) 25
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 1 cut(s) 155
BcoDI GTCTC 3 cut(s) 128, 146, 252
BisI GCNGC 1 cut(s) 169
BlsI GCNGC 1 cut(s) 170
Bme18I GGWCC 1 cut(s) 301
BmgT120I GGNCC 1 cut(s) 301
BmiI GGNNCC 2 cut(s) 303, 326
BmsI GCATC 2 cut(s) 133, 300
BpiI GAAGAC 1 cut(s) 25
BpuEI CTTGAG 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 108
BseDI CCNNGG 1 cut(s) 108
BseGI GGATG 1 cut(s) 148
BseMII CTCAG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 155
BshNI GGYRCC 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 319
BsmAI GTCTC 3 cut(s) 128, 146, 252
BsmBI CGTCTC 1 cut(s) 146
Bso31I GGTCTC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 319
Bsp19I CCATGG 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 72
BspLI GGNNCC 2 cut(s) 303, 326
BspT107I GGYRCC 1 cut(s) 324
BspTNI GGTCTC 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 108
BssSI CACGAG 2 cut(s) 129, 249
BssT1I CCWWGG 1 cut(s) 108
Bst2BI CACGAG 2 cut(s) 129, 249
Bst4CI ACNGT 1 cut(s) 356
BstC8I GCNNGC 3 cut(s) 166, 181, 315
BstDEI CTNAG 1 cut(s) 59
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 1 cut(s) 148
BstHHI GCGC 1 cut(s) 179
BstMAI GTCTC 3 cut(s) 128, 146, 252
BstMWI GCNNNNNNNGC 2 cut(s) 174, 287
BstNSI RCATGY 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 155
BstV2I GAAGAC 1 cut(s) 25
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 305
Cac8I GCNNGC 3 cut(s) 166, 181, 315
CfoI GCGC 1 cut(s) 179
Cfr13I GGNCC 1 cut(s) 301
CseI GACGC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 325, 352
CviAII CATG 2 cut(s) 109, 180
CviJI RGCY 1 cut(s) 164
CviKI_1 RGCY 1 cut(s) 164
CviQI GTAC 2 cut(s) 325, 352
DdeI CTNAG 1 cut(s) 59
Eco130I CCWWGG 1 cut(s) 108
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 1 cut(s) 301
EcoO109I RGGNCCY 1 cut(s) 301
EcoRI GAATTC 1 cut(s) 67
EcoT14I CCWWGG 1 cut(s) 108
EcoT22I ATGCAT 2 cut(s) 148, 363
ErhI CCWWGG 1 cut(s) 108
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 2 cut(s) 112, 183
FatI CATG 2 cut(s) 108, 179
FauNDI CATATG 2 cut(s) 148, 363
Fnu4HI GCNGC 1 cut(s) 169
FokI GGATG 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 169
GlaI GCGC 1 cut(s) 178
GluI GCNGC 1 cut(s) 169
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 179
Hin1II CATG 2 cut(s) 112, 183
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 2 cut(s) 4, 185
Hpy188I TCNGA 3 cut(s) 46, 62, 265
Hpy188III TCNNGA 3 cut(s) 52, 122, 195
HpyAV CCTTC 1 cut(s) 270
HpyCH4III ACNGT 1 cut(s) 356
HpyCH4V TGCA 4 cut(s) 146, 171, 254, 361
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 287
HpyF3I CTNAG 1 cut(s) 59
Hsp92II CATG 2 cut(s) 112, 183
HspAI GCGC 1 cut(s) 177
KpnI GGTACC 1 cut(s) 328
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 1 cut(s) 135
Lsp1109I GCAGC 1 cut(s) 155
LweI GCATC 2 cut(s) 133, 300
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 1 cut(s) 25
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 5 cut(s) 67, 85, 219, 273, 331
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 3 cut(s) 28, 234, 292
Mph1103I ATGCAT 2 cut(s) 148, 363
MseI TTAA 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 174, 287
NcoI CCATGG 1 cut(s) 108
NdeI CATATG 2 cut(s) 148, 363
NlaIII CATG 2 cut(s) 112, 183
NlaIV GGNNCC 2 cut(s) 303, 326
NmuCI GTSAC 1 cut(s) 5
NsiI ATGCAT 2 cut(s) 148, 363
NspI RCATGY 1 cut(s) 183
PaeI GCATGC 1 cut(s) 183
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 170
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 301
Psp5II RGGWCCY 1 cut(s) 301
PspN4I GGNNCC 2 cut(s) 303, 326
PspPI GGNCC 1 cut(s) 301
PspPPI RGGWCCY 1 cut(s) 301
RsaI GTAC 2 cut(s) 326, 353
RsaNI GTAC 2 cut(s) 325, 352
SaqAI TTAA 1 cut(s) 23
SatI GCNGC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 301
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 319
SetI ASST 2 cut(s) 166, 262
SfaNI GCATC 2 cut(s) 133, 300
SinI GGWCC 1 cut(s) 301
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
SphI GCATGC 1 cut(s) 183
Sse9I AATT 5 cut(s) 67, 85, 219, 273, 331
StyI CCWWGG 1 cut(s) 108
TaaI ACNGT 1 cut(s) 356
TasI AATT 5 cut(s) 67, 85, 219, 273, 331
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 312
TseFI GTSAC 1 cut(s) 5
TseI GCWGC 1 cut(s) 168
Tsp45I GTSAC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 1 cut(s) 312
VpaK11BI GGWCC 1 cut(s) 301
XapI RAATTY 2 cut(s) 67, 273
XceI RCATGY 1 cut(s) 183
Zsp2I ATGCAT 2 cut(s) 148, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.