Rroxscaffold_4G00318630

Nuclear transport factor 2 (NTF2) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015419
Physical Location & Seq
Reverse (-)
44891694 .. 44896588
4895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318630.1

Sequence Viewer

Length: 429 bp
ATGGAAAAGAATCCAGAAGCACAAGAGACATTGGATGAGACGAGAGAAGCGTGCTGCAAAGGCGCATGCGAATCAAGTTCAAGAAAGCGTCTTTCTGATGACATAATTCCTCACATTCTCAATCTATATGGGTCTCGTGCAACACCTTCCGACTTTGAAATTTATGCTCCAAATGCTTCATTTGAGGACCCACTGATGCGTGCTCAAGGGTTGAAGCAGATCAAGTCAGCATTTTATTCACTATCCAAGGTTTTCAGTGAATCAAGAATTGTGGAATACAACATCCAAGAAAATATGCCTTCTCCCGAAAATCATGAGATATTGATCGATAACAAACAATACTACAAATTCTTCGGAAGAGACATAAATGTGACGTCACTCATCAAGTTGTATGCCTTGGAAGGAAAAATTGTTCGTCACGAAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

16.33

Weight (kDa)

5.28

Isoelectric Point (pI)

62.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04830 AT5G04830
malus_domestica MD07G1062000.v1.1
prunus_persica Prupe.2G071800_v2.0.a1
pyrus_communis pycom07g04740
rosa_chinensis RchiOBHm_Chr1g0331851
rosa_laevigata RLG00000029708
rosa_multiflora Rmu_sc0000523.1_g000004
rosa_roxburghii Rroxscaffold_4G00318630
rosa_rugosa Rorug01G0096800 Rorug01G0096800
rosa_samantha Rh1AG120900 Rh1BG092400 Rh1CG115700 Rh1DG126800
rosa_wichuraiana Rw1G009830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 377
AcsI RAATTY 2 cut(s) 159, 347
AcyI GRCGYC 1 cut(s) 374
AgsI TTSAA 3 cut(s) 81, 158, 214
AloI GAACNNNNNNTCC 2 cut(s) 396, 428
Alw21I GWGCWC 1 cut(s) 205
Alw26I GTCTC 4 cut(s) 20, 32, 138, 354
ApeKI GCWGC 1 cut(s) 54
ApoI RAATTY 2 cut(s) 159, 347
AspLEI GCGC 1 cut(s) 65
AspS9I GGNCC 1 cut(s) 187
AvaII GGWCC 1 cut(s) 187
BauI CACGAG 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 205
BbvI GCAGC 1 cut(s) 41
BcoDI GTCTC 4 cut(s) 20, 32, 138, 354
BisI GCNGC 1 cut(s) 55
BlsI GCNGC 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 187
BmiI GGNNCC 1 cut(s) 189
BmsI GCATC 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 189
Bsa29I ATCGAT 1 cut(s) 327
BsaBI GATNNNNATC 1 cut(s) 323
BsaHI GRCGYC 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 246, 396
Bse8I GATNNNNATC 1 cut(s) 323
BseCI ATCGAT 1 cut(s) 327
BseDI CCNNGG 2 cut(s) 246, 396
BseGI GGATG 2 cut(s) 40, 282
BseJI GATNNNNATC 1 cut(s) 323
BseXI GCAGC 1 cut(s) 41
BshVI ATCGAT 1 cut(s) 327
BsiHKAI GWGCWC 1 cut(s) 205
BsmAI GTCTC 4 cut(s) 20, 32, 138, 354
BsmBI CGTCTC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 205
Bsp143I GATC 2 cut(s) 219, 324
BspDI ATCGAT 1 cut(s) 327
BspHI TCATGA 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 189
BspTNI GGTCTC 1 cut(s) 138
BssECI CCNNGG 2 cut(s) 246, 396
BssMI GATC 2 cut(s) 219, 324
BssNI GRCGYC 1 cut(s) 374
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 2 cut(s) 246, 396
Bst2BI CACGAG 1 cut(s) 135
Bst6I CTCTTC 1 cut(s) 352
BstACI GRCGYC 1 cut(s) 374
BstC8I GCNNGC 3 cut(s) 52, 67, 201
BstF5I GGATG 2 cut(s) 40, 282
BstHHI GCGC 1 cut(s) 65
BstKTI GATC 2 cut(s) 222, 327
BstMAI GTCTC 4 cut(s) 20, 32, 138, 354
BstMBI GATC 2 cut(s) 219, 324
BstMWI GCNNNNNNNGC 2 cut(s) 60, 173
BstNSI RCATGY 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 41
Bsu15I ATCGAT 1 cut(s) 327
BsuTUI ATCGAT 1 cut(s) 327
BtsCI GGATG 2 cut(s) 40, 282
BtsIMutI CAGTG 2 cut(s) 191, 262
Cac8I GCNNGC 3 cut(s) 52, 67, 201
CciI TCATGA 1 cut(s) 313
CfoI GCGC 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 187
ClaI ATCGAT 1 cut(s) 327
CseI GACGC 1 cut(s) 77
CspCI CAANNNNNGTGG 2 cut(s) 252, 287
CviAII CATG 2 cut(s) 66, 314
DpnI GATC 2 cut(s) 221, 326
DpnII GATC 2 cut(s) 219, 324
Eam1104I CTCTTC 1 cut(s) 352
EarI CTCTTC 1 cut(s) 352
Eco130I CCWWGG 2 cut(s) 246, 396
Eco31I GGTCTC 1 cut(s) 138
Eco47I GGWCC 1 cut(s) 187
EcoO109I RGGNCCY 1 cut(s) 187
EcoT14I CCWWGG 2 cut(s) 246, 396
ErhI CCWWGG 2 cut(s) 246, 396
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 2 cut(s) 69, 317
FaiI YATR 9 cut(s) 67, 104, 127, 129, 165, 296, 315, 365, 393
FatI CATG 2 cut(s) 65, 313
Fnu4HI GCNGC 1 cut(s) 55
FokI GGATG 2 cut(s) 47, 269
Fsp4HI GCNGC 1 cut(s) 55
GlaI GCGC 1 cut(s) 64
GluI GCNGC 1 cut(s) 55
HgaI GACGC 1 cut(s) 77
HhaI GCGC 1 cut(s) 65
Hin1I GRCGYC 1 cut(s) 374
Hin1II CATG 2 cut(s) 69, 317
Hin6I GCGC 1 cut(s) 63
HinP1I GCGC 1 cut(s) 63
HinfI GANTC 3 cut(s) 10, 71, 260
Hpy188I TCNGA 3 cut(s) 97, 151, 356
Hpy188III TCNNGA 6 cut(s) 14, 81, 264, 305, 314, 419
HpyAV CCTTC 3 cut(s) 156, 309, 395
HpyCH4IV ACGT 1 cut(s) 374
HpyCH4V TGCA 2 cut(s) 57, 140
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 173
HpySE526I ACGT 1 cut(s) 374
Hsp92I GRCGYC 1 cut(s) 374
Hsp92II CATG 2 cut(s) 69, 317
HspAI GCGC 1 cut(s) 63
Kzo9I GATC 2 cut(s) 219, 324
LmnI GCTCC 1 cut(s) 172
LpnPI CCDG 1 cut(s) 27
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 186
MaeII ACGT 1 cut(s) 374
MaeIII GTNAC 3 cut(s) 370, 375, 416
MalI GATC 2 cut(s) 221, 326
MboI GATC 2 cut(s) 219, 324
MboII GAAGA 2 cut(s) 343, 369
MhlI GDGCHC 1 cut(s) 205
MluCI AATT 5 cut(s) 105, 159, 267, 347, 408
MmeI TCCRAC 1 cut(s) 174
MnlI CCTC 2 cut(s) 120, 178
MslI CAYNNNNRTG 1 cut(s) 368
MwoI GCNNNNNNNGC 2 cut(s) 60, 173
NdeII GATC 2 cut(s) 219, 324
NlaIII CATG 2 cut(s) 69, 317
NlaIV GGNNCC 1 cut(s) 189
NmuCI GTSAC 3 cut(s) 370, 375, 416
NspI RCATGY 1 cut(s) 69
PaeI GCATGC 1 cut(s) 69
PagI TCATGA 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PfeI GAWTC 3 cut(s) 10, 71, 260
PkrI GCNGC 1 cut(s) 56
PpuMI RGGWCCY 1 cut(s) 187
Psp5II RGGWCCY 1 cut(s) 187
PspN4I GGNNCC 1 cut(s) 189
PspPI GGNCC 1 cut(s) 187
PspPPI RGGWCCY 1 cut(s) 187
RseI CAYNNNNRTG 1 cut(s) 368
SatI GCNGC 1 cut(s) 55
Sau3AI GATC 2 cut(s) 219, 324
Sau96I GGNCC 1 cut(s) 187
SduI GDGCHC 1 cut(s) 205
SetI ASST 3 cut(s) 148, 252, 377
SfaNI GCATC 1 cut(s) 186
SinI GGWCC 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 368
SmlI CTYRAG 1 cut(s) 204
SmoI CTYRAG 1 cut(s) 204
SphI GCATGC 1 cut(s) 69
Sse9I AATT 5 cut(s) 105, 159, 267, 347, 408
StyI CCWWGG 2 cut(s) 246, 396
TaiI ACGT 1 cut(s) 377
TaqI TCGA 1 cut(s) 327
TasI AATT 5 cut(s) 105, 159, 267, 347, 408
TfiI GAWTC 3 cut(s) 10, 71, 260
TscAI CASTG 2 cut(s) 198, 262
TseFI GTSAC 3 cut(s) 370, 375, 416
TseI GCWGC 1 cut(s) 54
Tsp45I GTSAC 3 cut(s) 370, 375, 416
TspDTI ATGAA 1 cut(s) 168
TspRI CASTG 2 cut(s) 198, 262
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 2 cut(s) 159, 347
XceI RCATGY 1 cut(s) 69
ZraI GACGTC 1 cut(s) 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.