Rh1BG092400

Nuclear transport factor 2 (NTF2) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0015419
Physical Location & Seq
Forward (+)
16077805 .. 16082416
4612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG092400.1

Sequence Viewer

Length: 672 bp
ATGAGTCACTACTTTCCCTCGTTAATACTCATCTTCTCCTTTTCTGAACTCTTGAAACTCAGAGTGAATTCTTTTACACTTCCAAATTGCTGTCGTATCATACCGACCATGGAAAAAAATCCAGAAGCACGAGAGACAATGGATGCATATGAGACGAGAGAAGCTTGCTGCAAAGGCGCATGTGAATCAAGTTCAAGAAAGCGTCTTGCTTATGACATAATTCCTCACATTCTCAATCTATATGGGTCTCGTGCAACACCTGCCGACTTTGAAATTTATGCTCCAAATGCTTCATTTGAGGACCCACTGATGCGTGCTCAAGGGTTGCAGCAGATCAAGTCAGCATTTTATTCACTATCCAAGGTTTTCAGTGAATCAAGAATTGTGGAATACAACATCCAAGAAAATATGCTTTCTCCCGAAAATCATGAGATATTGATCGATAACAAACAATACTACAAATTCTTCGGACGAGACATAAATGTGACGTCACTCATCAAGTTGTATGCCTCGGAAGGAAAAATTGTTCGTCACGAAGATTGGTGGGAGAAGAAGCCTCTTTTGAACAGAGAAACAGTTAAATTACCACTGATGGGCCGAATTATGGAACTGAGTCGTAGAGGTTCAATGCTGGCAACTCATGTTATGATGGGGTTTGGGAAGGACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.82

Weight (kDa)

8.21

Isoelectric Point (pI)

52.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04830 AT5G04830
malus_domestica MD07G1062000.v1.1
prunus_persica Prupe.2G071800_v2.0.a1
pyrus_communis pycom07g04740
rosa_chinensis RchiOBHm_Chr1g0331851
rosa_laevigata RLG00000029708
rosa_multiflora Rmu_sc0000523.1_g000004
rosa_roxburghii Rroxscaffold_4G00318630
rosa_rugosa Rorug01G0096800 Rorug01G0096800
rosa_samantha Rh1AG120900 Rh1BG092400 Rh1CG115700 Rh1DG126800
rosa_wichuraiana Rw1G009830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 268
AatII GACGTC 1 cut(s) 491
Acc36I ACCTGC 1 cut(s) 268
AcsI RAATTY 3 cut(s) 67, 273, 461
AcyI GRCGYC 1 cut(s) 488
AfiI CCNNNNNNNGG 2 cut(s) 593, 604
AgsI TTSAA 5 cut(s) 55, 195, 272, 565, 627
AloI GAACNNNNNNTCC 2 cut(s) 510, 542
AluBI AGCT 1 cut(s) 164
AluI AGCT 1 cut(s) 164
Alw21I GWGCWC 1 cut(s) 319
Alw26I GTCTC 4 cut(s) 128, 146, 252, 468
AoxI GGCC 1 cut(s) 595
ApeKI GCWGC 2 cut(s) 168, 328
ApoI RAATTY 3 cut(s) 67, 273, 461
AspLEI GCGC 1 cut(s) 179
AspS9I GGNCC 3 cut(s) 301, 595, 664
AvaII GGWCC 2 cut(s) 301, 664
BauI CACGAG 2 cut(s) 129, 249
Bbv12I GWGCWC 1 cut(s) 319
BbvI GCAGC 2 cut(s) 155, 340
BccI CCATC 2 cut(s) 586, 643
BcoDI GTCTC 4 cut(s) 128, 146, 252, 468
BfuAI ACCTGC 1 cut(s) 268
BisI GCNGC 2 cut(s) 169, 329
BlsI GCNGC 2 cut(s) 170, 330
Bme18I GGWCC 2 cut(s) 301, 664
BmgT120I GGNCC 3 cut(s) 301, 595, 664
BmiI GGNNCC 2 cut(s) 303, 666
BmsI GCATC 2 cut(s) 133, 300
BpuEI CTTGAG 1 cut(s) 303
Bsa29I ATCGAT 1 cut(s) 441
BsaBI GATNNNNATC 1 cut(s) 437
BsaHI GRCGYC 1 cut(s) 488
BsaI GGTCTC 1 cut(s) 252
BsaJI CCNNGG 3 cut(s) 108, 360, 510
Bsc4I CCNNNNNNNGG 2 cut(s) 593, 604
Bse8I GATNNNNATC 1 cut(s) 437
BseCI ATCGAT 1 cut(s) 441
BseDI CCNNGG 3 cut(s) 108, 360, 510
BseGI GGATG 2 cut(s) 148, 396
BseJI GATNNNNATC 1 cut(s) 437
BseLI CCNNNNNNNGG 2 cut(s) 593, 604
BseMII CTCAG 2 cut(s) 73, 602
BseXI GCAGC 2 cut(s) 155, 340
BshFI GGCC 1 cut(s) 597
BshVI ATCGAT 1 cut(s) 441
BsiHKAI GWGCWC 1 cut(s) 319
BslI CCNNNNNNNGG 2 cut(s) 593, 604
BsmAI GTCTC 4 cut(s) 128, 146, 252, 468
BsmBI CGTCTC 1 cut(s) 146
BsnI GGCC 1 cut(s) 597
Bso31I GGTCTC 1 cut(s) 252
Bsp1286I GDGCHC 1 cut(s) 319
Bsp143I GATC 2 cut(s) 333, 438
Bsp19I CCATGG 1 cut(s) 108
BspANI GGCC 1 cut(s) 597
BspCNI CTCAG 2 cut(s) 72, 603
BspDI ATCGAT 1 cut(s) 441
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 2 cut(s) 303, 666
BspMI ACCTGC 1 cut(s) 268
BspTNI GGTCTC 1 cut(s) 252
BssECI CCNNGG 3 cut(s) 108, 360, 510
BssMI GATC 2 cut(s) 333, 438
BssNI GRCGYC 1 cut(s) 488
BssSI CACGAG 2 cut(s) 129, 249
BssT1I CCWWGG 2 cut(s) 108, 360
Bst2BI CACGAG 2 cut(s) 129, 249
Bst4CI ACNGT 1 cut(s) 577
BstACI GRCGYC 1 cut(s) 488
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 3 cut(s) 166, 315, 633
BstDEI CTNAG 2 cut(s) 59, 611
BstDSI CCRYGG 1 cut(s) 108
BstF5I GGATG 2 cut(s) 148, 396
BstHHI GCGC 1 cut(s) 179
BstKTI GATC 2 cut(s) 336, 441
BstMAI GTCTC 4 cut(s) 128, 146, 252, 468
BstMBI GATC 2 cut(s) 333, 438
BstMWI GCNNNNNNNGC 3 cut(s) 174, 260, 287
BstNSI RCATGY 1 cut(s) 183
BstV1I GCAGC 2 cut(s) 155, 340
Bsu15I ATCGAT 1 cut(s) 441
BsuRI GGCC 1 cut(s) 597
BsuTUI ATCGAT 1 cut(s) 441
BtgI CCRYGG 1 cut(s) 108
BtsCI GGATG 2 cut(s) 148, 396
BtsIMutI CAGTG 3 cut(s) 305, 376, 587
BveI ACCTGC 1 cut(s) 268
Cac8I GCNNGC 3 cut(s) 166, 315, 633
CciI TCATGA 1 cut(s) 427
CfoI GCGC 1 cut(s) 179
Cfr13I GGNCC 3 cut(s) 301, 595, 664
ClaI ATCGAT 1 cut(s) 441
CseI GACGC 1 cut(s) 191
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviAII CATG 4 cut(s) 109, 180, 428, 641
CviJI RGCY 3 cut(s) 164, 556, 597
CviKI_1 RGCY 3 cut(s) 164, 556, 597
DdeI CTNAG 2 cut(s) 59, 611
DpnI GATC 2 cut(s) 335, 440
DpnII GATC 2 cut(s) 333, 438
Eco130I CCWWGG 2 cut(s) 108, 360
Eco31I GGTCTC 1 cut(s) 252
Eco47I GGWCC 2 cut(s) 301, 664
EcoO109I RGGNCCY 2 cut(s) 301, 664
EcoRI GAATTC 1 cut(s) 67
EcoT14I CCWWGG 2 cut(s) 108, 360
EcoT22I ATGCAT 1 cut(s) 148
ErhI CCWWGG 2 cut(s) 108, 360
Esp3I CGTCTC 1 cut(s) 146
FaeI CATG 4 cut(s) 112, 183, 431, 644
FatI CATG 4 cut(s) 108, 179, 427, 640
FauNDI CATATG 1 cut(s) 148
Fnu4HI GCNGC 2 cut(s) 169, 329
FokI GGATG 2 cut(s) 155, 383
Fsp4HI GCNGC 2 cut(s) 169, 329
GlaI GCGC 1 cut(s) 178
GluI GCNGC 2 cut(s) 169, 329
HaeIII GGCC 1 cut(s) 597
HgaI GACGC 1 cut(s) 191
HhaI GCGC 1 cut(s) 179
Hin1I GRCGYC 1 cut(s) 488
Hin1II CATG 4 cut(s) 112, 183, 431, 644
Hin6I GCGC 1 cut(s) 177
HinP1I GCGC 1 cut(s) 177
HindIII AAGCTT 1 cut(s) 162
HinfI GANTC 4 cut(s) 4, 185, 374, 613
Hpy188I TCNGA 4 cut(s) 46, 62, 470, 514
Hpy188III TCNNGA 7 cut(s) 52, 122, 195, 378, 419, 428, 533
HpyAV CCTTC 2 cut(s) 509, 655
HpyCH4III ACNGT 1 cut(s) 577
HpyCH4IV ACGT 1 cut(s) 488
HpyCH4V TGCA 4 cut(s) 146, 171, 254, 328
HpyF10VI GCNNNNNNNGC 3 cut(s) 174, 260, 287
HpyF3I CTNAG 2 cut(s) 59, 611
HpySE526I ACGT 1 cut(s) 488
Hsp92I GRCGYC 1 cut(s) 488
Hsp92II CATG 4 cut(s) 112, 183, 431, 644
HspAI GCGC 1 cut(s) 177
Kzo9I GATC 2 cut(s) 333, 438
LmnI GCTCC 1 cut(s) 286
LpnPI CCDG 3 cut(s) 135, 273, 617
Lsp1109I GCAGC 2 cut(s) 155, 340
LweI GCATC 2 cut(s) 133, 300
MaeII ACGT 1 cut(s) 488
MaeIII GTNAC 4 cut(s) 5, 484, 489, 530
MalI GATC 2 cut(s) 335, 440
MboI GATC 2 cut(s) 333, 438
MboII GAAGA 4 cut(s) 25, 457, 548, 562
MhlI GDGCHC 1 cut(s) 319
MluCI AATT 9 cut(s) 67, 85, 219, 273, 381, 461, 522, 581, 600
MlyI GAGTC 2 cut(s) 13, 622
MnlI CCTC 6 cut(s) 28, 234, 292, 520, 567, 614
Mph1103I ATGCAT 1 cut(s) 148
MseI TTAA 2 cut(s) 23, 579
MslI CAYNNNNRTG 1 cut(s) 482
MwoI GCNNNNNNNGC 3 cut(s) 174, 260, 287
NcoI CCATGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 148
NdeII GATC 2 cut(s) 333, 438
NlaIII CATG 4 cut(s) 112, 183, 431, 644
NlaIV GGNNCC 2 cut(s) 303, 666
NmuCI GTSAC 4 cut(s) 5, 484, 489, 530
NsiI ATGCAT 1 cut(s) 148
NspI RCATGY 1 cut(s) 183
PagI TCATGA 1 cut(s) 427
PaqCI CACCTGC 1 cut(s) 268
PfeI GAWTC 2 cut(s) 185, 374
PkrI GCNGC 2 cut(s) 170, 330
PleI GAGTC 2 cut(s) 12, 621
PpsI GAGTC 2 cut(s) 12, 621
PpuMI RGGWCCY 2 cut(s) 301, 664
Psp5II RGGWCCY 2 cut(s) 301, 664
PspN4I GGNNCC 2 cut(s) 303, 666
PspPI GGNCC 3 cut(s) 301, 595, 664
PspPPI RGGWCCY 2 cut(s) 301, 664
RseI CAYNNNNRTG 1 cut(s) 482
SaqAI TTAA 2 cut(s) 23, 579
SatI GCNGC 2 cut(s) 169, 329
Sau3AI GATC 2 cut(s) 333, 438
Sau96I GGNCC 3 cut(s) 301, 595, 664
SchI GAGTC 2 cut(s) 13, 622
SduI GDGCHC 1 cut(s) 319
SetI ASST 5 cut(s) 166, 262, 366, 491, 625
SfaNI GCATC 2 cut(s) 133, 300
SinI GGWCC 2 cut(s) 301, 664
SmiMI CAYNNNNRTG 1 cut(s) 482
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 9 cut(s) 67, 85, 219, 273, 381, 461, 522, 581, 600
StyI CCWWGG 2 cut(s) 108, 360
TaaI ACNGT 1 cut(s) 577
TaiI ACGT 1 cut(s) 491
TaqI TCGA 1 cut(s) 441
TasI AATT 9 cut(s) 67, 85, 219, 273, 381, 461, 522, 581, 600
TfiI GAWTC 2 cut(s) 185, 374
Tru1I TTAA 2 cut(s) 23, 579
Tru9I TTAA 2 cut(s) 23, 579
TscAI CASTG 3 cut(s) 312, 376, 594
TseFI GTSAC 4 cut(s) 5, 484, 489, 530
TseI GCWGC 2 cut(s) 168, 328
Tsp45I GTSAC 4 cut(s) 5, 484, 489, 530
TspDTI ATGAA 1 cut(s) 282
TspRI CASTG 3 cut(s) 312, 376, 594
VpaK11BI GGWCC 2 cut(s) 301, 664
XapI RAATTY 3 cut(s) 67, 273, 461
XceI RCATGY 1 cut(s) 183
ZraI GACGTC 1 cut(s) 489
Zsp2I ATGCAT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.