Rorug01G0096800

Nuclear transport factor 2 (NTF2) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0015419
Physical Location & Seq
Reverse (-)
16028587 .. 16034167
5581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0096800.1

Sequence Viewer

Length: 1584 bp
ATGCCAAATACAGGGCAATCTTATGGACACCCCACTCCACCAGTCCATGGAAGCACATGGCATAACATGCAACATTCTTCAACAGCAGGAAACTGGAATTTCCAACGGATTCATCCACCAGCACTTGTGACTCCGCATGCTCCTCCCTACCCATACATGTCAAAGGCTGCAGTACCACATGGAGCATTACCCCCTTCAAATAATACTACTTCTGGTTGTGCTGCACAAGGACCAACATGGTGTAGAGCTTTGTATCCAGCACAACCACAGGCTGGTCTTCAGCATAATCCACCACCCCCTCCCGCCTCTATTATTGTCAATCCCACTTCATTTGGAACTTCTGGACATTTAACAGCCGGCGCTTCTCAAATGGCTTCCTTGGCTCTCCTACCAGCAGCAAATCCTCAATCACCCTTTGCGCCATTGCCCACCGCTCCTTCACCTTCAACTTCATTGCCAAAGCTTGATGCTTTCAGTTTTCCTAGTCATCCCCATATTGATCATAGGTCTAATAAACTTCTGTTGACTGAAATGAGGCCTCTAAATGCTTCTGACATGGAGATTGAAGATCCTCTTATAAGAATTTTCAGTGCCGATCGTGGTCTCTTAATTGAAATAACAAATTCAAAGTGTCCTCAATCACATGAGGAGCTGAGTCTTTCACAAAATAAGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAGGGTGTACAACCTCTGAGACGAATGATACAAGTAGTGAAATTCCCTCCCTACAGCCTCAACTTGTAAGACTCTCAGATCAACAAGCACCGCAACCACTTAGAGAGAAAATTACTACAACAACAGAAATATGTTGCCAGTCACATGTGGAGCTGAGTCTTTCACAAAGTAGTAAGAAGAAGAAGAAGAAGAAAAGGTGTAAAACCCCCGAGACAAATATTAAAAGTTGTGAAAGTCCCTCTATACAGCCTCAACTTGTACAGGTGACAGATCAAGAGGTAGAAATGCCTCAGGATTTGAGTTTCTCAGCGAAAAACAAGAAAAGCTGTAAACTCCTTGACTGTAGTACTGAAGTGTGCGACGTTTCTGTTGGTACTTCTGTTATGGAAAGCAATATGCCAGCAGTTGTTCCATATATACAGCCTTCTATGGAGCAGCTTGTTGTGCAGCCACTTGTGGAGGGAATGAGTACAACAACAAACTCAAAAAGCCCCAAACCTAATGCAGATTTTGGCTGCTTACAAGAAACAAGGAAAAAGAAGCAGAAGAGAAGCCACAAAACCAATGAGAATAAAGAGCTACCAGTGGAAACAATGATGCCAGAAGCAGATCCATCTTTTCAGCCTTCTTTTGCAATGTTCTCTGAACAAGAATTAGAGATGTCACAACCACTTAATGTTGATGCAGGACCACTTGTGGAGGGAATGAGCAGAACATTAAACCCAGAAAAGCCCAGGCTGAATGCAGATTTTAACTGCTCACAAGAAACAAAGAAGAAAAAGCCAAAGAGAGAAATATTAATGGAACCAATGATGCAAGAAGCAGAATCATCTCTTCAGCCTTCTCTTACAATTTCTCTGAACAAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

527

Amino Acids

57.96

Weight (kDa)

8.98

Isoelectric Point (pI)

69.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04830 AT5G04830
malus_domestica MD07G1062000.v1.1
prunus_persica Prupe.2G071800_v2.0.a1
pyrus_communis pycom07g04740
rosa_chinensis RchiOBHm_Chr1g0331851
rosa_laevigata RLG00000029708
rosa_multiflora Rmu_sc0000523.1_g000004
rosa_roxburghii Rroxscaffold_4G00318630
rosa_rugosa Rorug01G0096800 Rorug01G0096800
rosa_samantha Rh1AG120900 Rh1BG092400 Rh1CG115700 Rh1DG126800
rosa_wichuraiana Rw1G009830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 578
AccB7I CCANNNNNTGG 2 cut(s) 47, 272
AccBSI CCGCTC 1 cut(s) 434
AciI CCGC 4 cut(s) 134, 303, 432, 803
AclWI GGATC 2 cut(s) 563, 1316
AcsI RAATTY 4 cut(s) 97, 582, 622, 753
AcuI CTGAAG 3 cut(s) 263, 1083, 1532
AfaI GTAC 7 cut(s) 174, 721, 972, 1060, 1087, 1183, 1580
AfiI CCNNNNNNNGG 3 cut(s) 11, 47, 272
AflIII ACRYGT 2 cut(s) 156, 856
AgsI TTSAA 6 cut(s) 81, 198, 447, 566, 614, 627
AjnI CCWGG 1 cut(s) 1445
AluBI AGCT 7 cut(s) 248, 463, 652, 865, 1038, 1150, 1291
AluI AGCT 7 cut(s) 248, 463, 652, 865, 1038, 1150, 1291
Alw26I GTCTC 3 cut(s) 608, 725, 917
AlwI GGATC 2 cut(s) 563, 1316
Ama87I CYCGRG 1 cut(s) 920
AoxI GGCC 1 cut(s) 536
ApeKI GCWGC 6 cut(s) 167, 221, 395, 1147, 1159, 1227
ApoI RAATTY 4 cut(s) 97, 582, 622, 753
AseI ATTAAT 1 cut(s) 1511
AspLEI GCGC 2 cut(s) 362, 421
AspS9I GGNCC 2 cut(s) 230, 1400
AsuHPI GGTGA 3 cut(s) 402, 432, 988
AvaI CYCGRG 1 cut(s) 920
AvaII GGWCC 2 cut(s) 230, 1400
AxyI CCTNAGG 1 cut(s) 1002
BaeI ACNNNNGTAYC 2 cut(s) 1077, 1110
BbsI GAAGAC 1 cut(s) 269
BbvI GCAGC 6 cut(s) 154, 208, 407, 1159, 1171, 1214
BccI CCATC 1 cut(s) 1333
BciT130I CCWGG 1 cut(s) 1447
BciVI GTATCC 1 cut(s) 264
BclI TGATCA 1 cut(s) 499
BcoDI GTCTC 3 cut(s) 608, 725, 917
BfaI CTAG 2 cut(s) 483, 1582
BfmI CTRYAG 3 cut(s) 168, 764, 1054
BfoI RGCGCY 1 cut(s) 363
BfuI GTATCC 1 cut(s) 264
BisI GCNGC 6 cut(s) 168, 222, 396, 1148, 1160, 1228
BlsI GCNGC 6 cut(s) 169, 223, 397, 1149, 1161, 1229
BmcAI AGTACT 2 cut(s) 1060, 1580
Bme1390I CCNGG 1 cut(s) 1447
Bme18I GGWCC 2 cut(s) 230, 1400
BmeT110I CYCGRG 1 cut(s) 920
BmgT120I GGNCC 2 cut(s) 230, 1400
BmiI GGNNCC 1 cut(s) 1518
BmrFI CCNGG 1 cut(s) 1447
BmsI GCATC 4 cut(s) 457, 1299, 1384, 1515
BpiI GAAGAC 1 cut(s) 269
BsaI GGTCTC 1 cut(s) 608
BsaJI CCNNGG 3 cut(s) 46, 378, 1445
Bsc4I CCNNNNNNNGG 3 cut(s) 11, 47, 272
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 4 cut(s) 41, 98, 850, 1295
Bse21I CCTNAGG 1 cut(s) 1002
Bse3DI GCAATG 3 cut(s) 422, 452, 1353
BseBI CCWGG 1 cut(s) 1447
BseDI CCNNGG 3 cut(s) 46, 378, 1445
BseGI GGATG 2 cut(s) 112, 487
BseLI CCNNNNNNNGG 3 cut(s) 11, 47, 272
BseMI GCAATG 3 cut(s) 422, 452, 1353
BseMII CTCAG 6 cut(s) 644, 720, 801, 857, 1016, 1032
BseNI ACTGG 4 cut(s) 41, 98, 850, 1295
BseRI GAGGAG 2 cut(s) 132, 662
BseXI GCAGC 6 cut(s) 154, 208, 407, 1159, 1171, 1214
BsgI GTGCAG 2 cut(s) 207, 1178
Bsh1285I CGRYCG 1 cut(s) 598
BshFI GGCC 1 cut(s) 538
BsiEI CGRYCG 1 cut(s) 598
BsiHKCI CYCGRG 1 cut(s) 920
BsiSI CCGG 1 cut(s) 357
BslFI GGGAC 1 cut(s) 933
BslI CCNNNNNNNGG 3 cut(s) 11, 47, 272
BsmAI GTCTC 3 cut(s) 608, 725, 917
BsmBI CGTCTC 1 cut(s) 725
BsmFI GGGAC 1 cut(s) 933
BsmI GAATGC 1 cut(s) 1459
BsnI GGCC 1 cut(s) 538
Bso31I GGTCTC 1 cut(s) 608
BsoBI CYCGRG 1 cut(s) 920
Bsp1407I TGTACA 2 cut(s) 719, 970
Bsp143I GATC 6 cut(s) 499, 568, 595, 790, 982, 1321
Bsp19I CCATGG 1 cut(s) 46
BspACI CCGC 4 cut(s) 134, 303, 432, 803
BspANI GGCC 1 cut(s) 538
BspCNI CTCAG 6 cut(s) 645, 721, 800, 858, 1015, 1031
BspLI GGNNCC 1 cut(s) 1518
BspMAI CTGCAG 1 cut(s) 172
BspPI GGATC 2 cut(s) 563, 1316
BspTNI GGTCTC 1 cut(s) 608
BsrBI CCGCTC 1 cut(s) 434
BsrDI GCAATG 3 cut(s) 422, 452, 1353
BsrFI RCCGGY 1 cut(s) 356
BsrGI TGTACA 2 cut(s) 719, 970
BsrI ACTGG 4 cut(s) 41, 98, 850, 1295
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 3 cut(s) 46, 378, 1445
BssMI GATC 6 cut(s) 499, 568, 595, 790, 982, 1321
BssT1I CCWWGG 2 cut(s) 46, 378
Bst2UI CCWGG 1 cut(s) 1447
Bst4CI ACNGT 1 cut(s) 1055
Bst6I CTCTTC 2 cut(s) 1253, 1551
BstAPI GCANNNNNTGC 1 cut(s) 67
BstAUI TGTACA 2 cut(s) 719, 970
BstC8I GCNNGC 3 cut(s) 138, 358, 1113
BstDEI CTNAG 7 cut(s) 653, 729, 787, 812, 866, 1002, 1018
BstDSI CCRYGG 1 cut(s) 46
BstF5I GGATG 2 cut(s) 112, 487
BstH2I RGCGCY 1 cut(s) 363
BstHHI GCGC 2 cut(s) 362, 421
BstKTI GATC 6 cut(s) 502, 571, 598, 793, 985, 1324
BstMAI GTCTC 3 cut(s) 608, 725, 917
BstMBI GATC 6 cut(s) 499, 568, 595, 790, 982, 1321
BstMCI CGRYCG 1 cut(s) 598
BstMWI GCNNNNNNNGC 3 cut(s) 67, 380, 1156
BstNI CCWGG 1 cut(s) 1447
BstNSI RCATGY 4 cut(s) 70, 140, 160, 860
BstSCI CCNGG 1 cut(s) 1445
BstSFI CTRYAG 3 cut(s) 168, 764, 1054
BstV1I GCAGC 6 cut(s) 154, 208, 407, 1159, 1171, 1214
BstV2I GAAGAC 1 cut(s) 269
BstX2I RGATCY 2 cut(s) 568, 1321
BstYI RGATCY 2 cut(s) 568, 1321
Bsu36I CCTNAGG 1 cut(s) 1002
BsuI GTATCC 1 cut(s) 264
BsuRI GGCC 1 cut(s) 538
BtgI CCRYGG 1 cut(s) 46
BtsCI GGATG 2 cut(s) 112, 487
BtsIMutI CAGTG 2 cut(s) 595, 1302
Cac8I GCNNGC 3 cut(s) 138, 358, 1113
CfoI GCGC 2 cut(s) 362, 421
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 2 cut(s) 230, 1400
Csp6I GTAC 7 cut(s) 173, 720, 971, 1059, 1086, 1182, 1579
CspCI CAANNNNNGTGG 2 cut(s) 313, 348
CviQI GTAC 7 cut(s) 173, 720, 971, 1059, 1086, 1182, 1579
DdeI CTNAG 7 cut(s) 653, 729, 787, 812, 866, 1002, 1018
DpnI GATC 6 cut(s) 501, 570, 597, 792, 984, 1323
DpnII GATC 6 cut(s) 499, 568, 595, 790, 982, 1321
Eam1104I CTCTTC 2 cut(s) 1253, 1551
EarI CTCTTC 2 cut(s) 1253, 1551
Eco130I CCWWGG 2 cut(s) 46, 378
Eco147I AGGCCT 1 cut(s) 538
Eco31I GGTCTC 1 cut(s) 608
Eco47I GGWCC 2 cut(s) 230, 1400
Eco57I CTGAAG 3 cut(s) 263, 1083, 1532
Eco81I CCTNAGG 1 cut(s) 1002
Eco88I CYCGRG 1 cut(s) 920
EcoRII CCWGG 1 cut(s) 1445
EcoT14I CCWWGG 2 cut(s) 46, 378
ErhI CCWWGG 2 cut(s) 46, 378
Esp3I CGTCTC 1 cut(s) 725
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 1 cut(s) 933
FauI CCCGC 1 cut(s) 310
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 6 cut(s) 168, 222, 396, 1148, 1160, 1228
FokI GGATG 2 cut(s) 99, 474
Fsp4HI GCNGC 6 cut(s) 168, 222, 396, 1148, 1160, 1228
FspBI CTAG 2 cut(s) 483, 1582
GlaI GCGC 2 cut(s) 361, 420
GluI GCNGC 6 cut(s) 168, 222, 396, 1148, 1160, 1228
HaeII RGCGCY 1 cut(s) 363
HaeIII GGCC 1 cut(s) 538
HapII CCGG 1 cut(s) 357
HhaI GCGC 2 cut(s) 362, 421
Hin6I GCGC 2 cut(s) 360, 419
HinP1I GCGC 2 cut(s) 360, 419
HincII GTYRAC 1 cut(s) 525
HindII GTYRAC 1 cut(s) 525
HindIII AAGCTT 1 cut(s) 461
HinfI GANTC 6 cut(s) 109, 130, 655, 783, 868, 1538
HpaII CCGG 1 cut(s) 357
HphI GGTGA 3 cut(s) 402, 432, 988
Hpy166II GTNNAC 3 cut(s) 525, 720, 1043
Hpy188I TCNGA 5 cut(s) 553, 730, 790, 1357, 1572
Hpy188III TCNNGA 3 cut(s) 342, 986, 1004
Hpy8I GTNNAC 3 cut(s) 525, 720, 1043
Hpy99I CGWCG 1 cut(s) 1076
HpyAV CCTTC 6 cut(s) 204, 447, 453, 1146, 1347, 1563
HpyCH4III ACNGT 1 cut(s) 1055
HpyCH4IV ACGT 1 cut(s) 1074
HpyCH4V TGCA 9 cut(s) 70, 170, 224, 1159, 1217, 1346, 1397, 1457, 1528
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 380, 1156
HpyF3I CTNAG 7 cut(s) 653, 729, 787, 812, 866, 1002, 1018
HpySE526I ACGT 1 cut(s) 1074
HspAI GCGC 2 cut(s) 360, 419
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 6 cut(s) 499, 568, 595, 790, 982, 1321
LmnI GCTCC 6 cut(s) 145, 182, 439, 649, 862, 1144
Lsp1109I GCAGC 6 cut(s) 154, 208, 407, 1159, 1171, 1214
LweI GCATC 4 cut(s) 457, 1299, 1384, 1515
MaeI CTAG 2 cut(s) 483, 1582
MaeII ACGT 1 cut(s) 1074
MaeIII GTNAC 4 cut(s) 127, 852, 976, 1374
MalI GATC 6 cut(s) 501, 570, 597, 792, 984, 1323
MbiI CCGCTC 1 cut(s) 434
MboI GATC 6 cut(s) 499, 568, 595, 790, 982, 1321
MflI RGATCY 2 cut(s) 568, 1321
MluCI AATT 8 cut(s) 97, 582, 609, 622, 753, 822, 1364, 1563
MlyI GAGTC 4 cut(s) 124, 664, 777, 877
MmeI TCCRAC 1 cut(s) 127
MroNI GCCGGC 1 cut(s) 356
MseI TTAA 7 cut(s) 350, 608, 933, 1386, 1430, 1464, 1511
MspI CCGG 1 cut(s) 357
MspR9I CCNGG 1 cut(s) 1447
Mva1269I GAATGC 1 cut(s) 1459
MvaI CCWGG 1 cut(s) 1447
MwoI GCNNNNNNNGC 3 cut(s) 67, 380, 1156
NaeI GCCGGC 1 cut(s) 358
NcoI CCATGG 1 cut(s) 46
NdeII GATC 6 cut(s) 499, 568, 595, 790, 982, 1321
NgoMIV GCCGGC 1 cut(s) 356
NlaIV GGNNCC 1 cut(s) 1518
NmuCI GTSAC 4 cut(s) 127, 852, 976, 1374
NspI RCATGY 4 cut(s) 70, 140, 160, 860
PaeI GCATGC 1 cut(s) 140
PceI AGGCCT 1 cut(s) 538
PciI ACATGT 2 cut(s) 156, 856
PctI GAATGC 1 cut(s) 1459
PdiI GCCGGC 1 cut(s) 358
PfeI GAWTC 2 cut(s) 109, 1538
PflMI CCANNNNNTGG 2 cut(s) 47, 272
PkrI GCNGC 6 cut(s) 169, 223, 397, 1149, 1161, 1229
Ple19I CGATCG 1 cut(s) 598
PleI GAGTC 4 cut(s) 124, 663, 777, 876
PpsI GAGTC 4 cut(s) 124, 663, 777, 876
PscI ACATGT 2 cut(s) 156, 856
PshBI ATTAAT 1 cut(s) 1511
PsiI TTATAA 1 cut(s) 578
Psp6I CCWGG 1 cut(s) 1445
PspGI CCWGG 1 cut(s) 1445
PspN4I GGNNCC 1 cut(s) 1518
PspPI GGNCC 2 cut(s) 230, 1400
PstI CTGCAG 1 cut(s) 172
PsuI RGATCY 2 cut(s) 568, 1321
PvuI CGATCG 1 cut(s) 598
RsaI GTAC 7 cut(s) 174, 721, 972, 1060, 1087, 1183, 1580
RsaNI GTAC 7 cut(s) 173, 720, 971, 1059, 1086, 1182, 1579
SaqAI TTAA 7 cut(s) 350, 608, 933, 1386, 1430, 1464, 1511
SatI GCNGC 6 cut(s) 168, 222, 396, 1148, 1160, 1228
Sau3AI GATC 6 cut(s) 499, 568, 595, 790, 982, 1321
Sau96I GGNCC 2 cut(s) 230, 1400
ScaI AGTACT 2 cut(s) 1060, 1580
SchI GAGTC 4 cut(s) 124, 664, 777, 877
ScrFI CCNGG 1 cut(s) 1447
SfaNI GCATC 4 cut(s) 457, 1299, 1384, 1515
SfcI CTRYAG 3 cut(s) 168, 764, 1054
SinI GGWCC 2 cut(s) 230, 1400
SphI GCATGC 1 cut(s) 140
Sse9I AATT 8 cut(s) 97, 582, 609, 622, 753, 822, 1364, 1563
SseBI AGGCCT 1 cut(s) 538
SsiI CCGC 4 cut(s) 134, 303, 432, 803
SspI AATATT 2 cut(s) 931, 1509
SspMI CTAG 2 cut(s) 483, 1582
StuI AGGCCT 1 cut(s) 538
StyD4I CCNGG 1 cut(s) 1445
StyI CCWWGG 2 cut(s) 46, 378
TaaI ACNGT 1 cut(s) 1055
TaiI ACGT 1 cut(s) 1077
TasI AATT 8 cut(s) 97, 582, 609, 622, 753, 822, 1364, 1563
TatI WGTACW 5 cut(s) 719, 970, 1058, 1181, 1578
TfiI GAWTC 2 cut(s) 109, 1538
Tru1I TTAA 7 cut(s) 350, 608, 933, 1386, 1430, 1464, 1511
Tru9I TTAA 7 cut(s) 350, 608, 933, 1386, 1430, 1464, 1511
TscAI CASTG 2 cut(s) 595, 1302
TseFI GTSAC 4 cut(s) 127, 852, 976, 1374
TseI GCWGC 6 cut(s) 167, 221, 395, 1147, 1159, 1227
Tsp45I GTSAC 4 cut(s) 127, 852, 976, 1374
TspDTI ATGAA 4 cut(s) 101, 318, 441, 692
TspGWI ACGGA 1 cut(s) 121
TspRI CASTG 2 cut(s) 595, 1302
Van91I CCANNNNNTGG 2 cut(s) 47, 272
VpaK11BI GGWCC 2 cut(s) 230, 1400
VspI ATTAAT 1 cut(s) 1511
XapI RAATTY 4 cut(s) 97, 582, 622, 753
XceI RCATGY 4 cut(s) 70, 140, 160, 860
XspI CTAG 2 cut(s) 483, 1582
ZrmI AGTACT 2 cut(s) 1060, 1580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.