Rh1AG120900

Nuclear transport factor 2 (NTF2) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0015419
Physical Location & Seq
Forward (+)
22514223 .. 22519566
5344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG120900.1

Sequence Viewer

Length: 534 bp
ATGGATGCATATGAGACGAGAGAAGCTTGCTGCAAAGGCGCATGCGAATCAAGTTCAAGAAAGCGTCTTGCTGATGACATAATTCCTCACATTCTCAATCTATATGGGTCTCGTGCAACACCTTCCGACTTTGAAATTTATGCTCCAAATGCTTCATTTGAGGACCCACTGATGCGTGCTCAAGGGTTGAAGCAGATCAAGTCAGCATTTTATTCACTATCCAAGGTTTTCAGTGAATCAAGAATTGTGGAATACAACATCCAAGAAAATATGCTTTCTCCCAAAAATCATGAGATATTGATCGATAACAAACAATACTACAAATTCTTCGGAAGAGACATAAATGTGACGTCACTCATCAAGTTGTATGCCTTGGAAGGAAAAATTGTTCGTCACGAAGATTGGTGGGAGAAGAAGCCTCTTTTGAACAGAGAAACAGTTAAATTACCACTGATGGGCCGAATTATGGAACTGAGTCGTAGAGGTTCAATGCTGGCAACTCATGTTATGATGGGGTTTGGGAAGGACCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.44

Weight (kDa)

8.69

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04830 AT5G04830
malus_domestica MD07G1062000.v1.1
prunus_persica Prupe.2G071800_v2.0.a1
pyrus_communis pycom07g04740
rosa_chinensis RchiOBHm_Chr1g0331851
rosa_laevigata RLG00000029708
rosa_multiflora Rmu_sc0000523.1_g000004
rosa_roxburghii Rroxscaffold_4G00318630
rosa_rugosa Rorug01G0096800 Rorug01G0096800
rosa_samantha Rh1AG120900 Rh1BG092400 Rh1CG115700 Rh1DG126800
rosa_wichuraiana Rw1G009830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 353
AcsI RAATTY 2 cut(s) 135, 323
AcyI GRCGYC 1 cut(s) 350
AfiI CCNNNNNNNGG 2 cut(s) 455, 466
AgsI TTSAA 5 cut(s) 57, 134, 190, 427, 489
AloI GAACNNNNNNTCC 2 cut(s) 372, 404
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 3 cut(s) 8, 114, 330
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 1 cut(s) 30
ApoI RAATTY 2 cut(s) 135, 323
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 3 cut(s) 163, 457, 526
AvaII GGWCC 2 cut(s) 163, 526
BauI CACGAG 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 17
BccI CCATC 2 cut(s) 448, 505
BcoDI GTCTC 3 cut(s) 8, 114, 330
BisI GCNGC 1 cut(s) 31
BlsI GCNGC 1 cut(s) 32
Bme18I GGWCC 2 cut(s) 163, 526
BmgT120I GGNCC 3 cut(s) 163, 457, 526
BmiI GGNNCC 2 cut(s) 165, 528
BmsI GCATC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 165
Bsa29I ATCGAT 1 cut(s) 303
BsaBI GATNNNNATC 1 cut(s) 299
BsaHI GRCGYC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 222, 372
Bsc4I CCNNNNNNNGG 2 cut(s) 455, 466
Bse8I GATNNNNATC 1 cut(s) 299
BseCI ATCGAT 1 cut(s) 303
BseDI CCNNGG 2 cut(s) 222, 372
BseGI GGATG 2 cut(s) 10, 258
BseJI GATNNNNATC 1 cut(s) 299
BseLI CCNNNNNNNGG 2 cut(s) 455, 466
BseMII CTCAG 1 cut(s) 464
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 459
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 181
BslI CCNNNNNNNGG 2 cut(s) 455, 466
BsmAI GTCTC 3 cut(s) 8, 114, 330
BsmBI CGTCTC 1 cut(s) 8
BsnI GGCC 1 cut(s) 459
Bso31I GGTCTC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 2 cut(s) 195, 300
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 1 cut(s) 465
BspDI ATCGAT 1 cut(s) 303
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 2 cut(s) 165, 528
BspTNI GGTCTC 1 cut(s) 114
BssECI CCNNGG 2 cut(s) 222, 372
BssMI GATC 2 cut(s) 195, 300
BssNI GRCGYC 1 cut(s) 350
BssSI CACGAG 1 cut(s) 111
BssT1I CCWWGG 2 cut(s) 222, 372
Bst2BI CACGAG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 1 cut(s) 328
BstACI GRCGYC 1 cut(s) 350
BstC8I GCNNGC 4 cut(s) 28, 43, 177, 495
BstDEI CTNAG 1 cut(s) 473
BstF5I GGATG 2 cut(s) 10, 258
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 2 cut(s) 198, 303
BstMAI GTCTC 3 cut(s) 8, 114, 330
BstMBI GATC 2 cut(s) 195, 300
BstMWI GCNNNNNNNGC 2 cut(s) 36, 149
BstNSI RCATGY 1 cut(s) 45
BstV1I GCAGC 1 cut(s) 17
Bsu15I ATCGAT 1 cut(s) 303
BsuRI GGCC 1 cut(s) 459
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 2 cut(s) 10, 258
BtsIMutI CAGTG 3 cut(s) 167, 238, 449
Cac8I GCNNGC 4 cut(s) 28, 43, 177, 495
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 3 cut(s) 163, 457, 526
ClaI ATCGAT 1 cut(s) 303
CseI GACGC 1 cut(s) 53
CspCI CAANNNNNGTGG 2 cut(s) 228, 263
CviAII CATG 3 cut(s) 42, 290, 503
CviJI RGCY 3 cut(s) 26, 418, 459
CviKI_1 RGCY 3 cut(s) 26, 418, 459
DdeI CTNAG 1 cut(s) 473
DpnI GATC 2 cut(s) 197, 302
DpnII GATC 2 cut(s) 195, 300
Eam1104I CTCTTC 1 cut(s) 328
EarI CTCTTC 1 cut(s) 328
Eco130I CCWWGG 2 cut(s) 222, 372
Eco31I GGTCTC 1 cut(s) 114
Eco47I GGWCC 2 cut(s) 163, 526
EcoO109I RGGNCCY 2 cut(s) 163, 526
EcoT14I CCWWGG 2 cut(s) 222, 372
EcoT22I ATGCAT 1 cut(s) 10
ErhI CCWWGG 2 cut(s) 222, 372
Esp3I CGTCTC 1 cut(s) 8
FaeI CATG 3 cut(s) 45, 293, 506
FatI CATG 3 cut(s) 41, 289, 502
FauNDI CATATG 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 31
FokI GGATG 2 cut(s) 17, 245
Fsp4HI GCNGC 1 cut(s) 31
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 31
HaeIII GGCC 1 cut(s) 459
HgaI GACGC 1 cut(s) 53
HhaI GCGC 1 cut(s) 41
Hin1I GRCGYC 1 cut(s) 350
Hin1II CATG 3 cut(s) 45, 293, 506
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HindIII AAGCTT 1 cut(s) 24
HinfI GANTC 3 cut(s) 47, 236, 475
Hpy188I TCNGA 2 cut(s) 127, 332
Hpy188III TCNNGA 4 cut(s) 57, 240, 290, 395
HpyAV CCTTC 3 cut(s) 132, 371, 517
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4IV ACGT 1 cut(s) 350
HpyCH4V TGCA 3 cut(s) 8, 33, 116
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 149
HpyF3I CTNAG 1 cut(s) 473
HpySE526I ACGT 1 cut(s) 350
Hsp92I GRCGYC 1 cut(s) 350
Hsp92II CATG 3 cut(s) 45, 293, 506
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 2 cut(s) 195, 300
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 1 cut(s) 479
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 1 cut(s) 162
MaeII ACGT 1 cut(s) 350
MaeIII GTNAC 3 cut(s) 346, 351, 392
MalI GATC 2 cut(s) 197, 302
MboI GATC 2 cut(s) 195, 300
MboII GAAGA 4 cut(s) 319, 345, 410, 424
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 7 cut(s) 81, 135, 243, 323, 384, 443, 462
MlyI GAGTC 1 cut(s) 484
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 4 cut(s) 96, 154, 429, 476
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 1 cut(s) 441
MslI CAYNNNNRTG 1 cut(s) 344
MwoI GCNNNNNNNGC 2 cut(s) 36, 149
NdeI CATATG 1 cut(s) 10
NdeII GATC 2 cut(s) 195, 300
NlaIII CATG 3 cut(s) 45, 293, 506
NlaIV GGNNCC 2 cut(s) 165, 528
NmuCI GTSAC 3 cut(s) 346, 351, 392
NsiI ATGCAT 1 cut(s) 10
NspI RCATGY 1 cut(s) 45
PaeI GCATGC 1 cut(s) 45
PagI TCATGA 1 cut(s) 289
PfeI GAWTC 2 cut(s) 47, 236
PkrI GCNGC 1 cut(s) 32
PleI GAGTC 1 cut(s) 483
PpsI GAGTC 1 cut(s) 483
PpuMI RGGWCCY 2 cut(s) 163, 526
Psp5II RGGWCCY 2 cut(s) 163, 526
PspN4I GGNNCC 2 cut(s) 165, 528
PspPI GGNCC 3 cut(s) 163, 457, 526
PspPPI RGGWCCY 2 cut(s) 163, 526
RseI CAYNNNNRTG 1 cut(s) 344
SaqAI TTAA 1 cut(s) 441
SatI GCNGC 1 cut(s) 31
Sau3AI GATC 2 cut(s) 195, 300
Sau96I GGNCC 3 cut(s) 163, 457, 526
SchI GAGTC 1 cut(s) 484
SduI GDGCHC 1 cut(s) 181
SetI ASST 5 cut(s) 28, 124, 228, 353, 487
SfaNI GCATC 1 cut(s) 162
SinI GGWCC 2 cut(s) 163, 526
SmiMI CAYNNNNRTG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 180
SmoI CTYRAG 1 cut(s) 180
SphI GCATGC 1 cut(s) 45
Sse9I AATT 7 cut(s) 81, 135, 243, 323, 384, 443, 462
StyI CCWWGG 2 cut(s) 222, 372
TaaI ACNGT 1 cut(s) 439
TaiI ACGT 1 cut(s) 353
TaqI TCGA 1 cut(s) 303
TasI AATT 7 cut(s) 81, 135, 243, 323, 384, 443, 462
TfiI GAWTC 2 cut(s) 47, 236
Tru1I TTAA 1 cut(s) 441
Tru9I TTAA 1 cut(s) 441
TscAI CASTG 3 cut(s) 174, 238, 456
TseFI GTSAC 3 cut(s) 346, 351, 392
TseI GCWGC 1 cut(s) 30
Tsp45I GTSAC 3 cut(s) 346, 351, 392
TspDTI ATGAA 1 cut(s) 144
TspRI CASTG 3 cut(s) 174, 238, 456
VpaK11BI GGWCC 2 cut(s) 163, 526
XapI RAATTY 2 cut(s) 135, 323
XceI RCATGY 1 cut(s) 45
ZraI GACGTC 1 cut(s) 351
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.