Prupe.2G071800_v2.0.a1

Nuclear transport factor 2 (NTF2) family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015419
Physical Location & Seq
Reverse (-)
10871281 .. 10875198
3918 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G071800.1

Sequence Viewer

Length: 576 bp
ATGGAGAAAAACCAACAAGATAAGGAAGAGTATATGGATCAGAAGAGGGAAGCGGGCTGCAAAGGAGCATGCGAATTTATTTCAAGAAAGCACCTTTCTGATGATATAATGCCTCACATTCTTAACCTATATGGATCCCGTGCAACGGCCTCTGACTTTGAAATCTACAGTCCAAATGCTTCCTTTGAGGACCCACTGATGTGTGCTCGTGGGTTGAAGCAGATCAAATCAGCGTTTTATTCACTTCCCAAGATCTTTAGTGAATCAAGAATTGTGGAATACGACATCACAGAAAATATGATTTCACCAGGAAATCATGAGATATTGATTGATAACAAACAACATTACAAGTTCATGGGGAAAGACGTAGATGTGATATCACTCATCAAATTGCACCTTTTGGAAGGAAAAGTTGTTCGCCATGAAGATTGGTGGGACAAGAAGCCTCTTTGGAATAGAGAAACAGTTAAGATACCGCTGATTGGCCGCGTTGTGGAAATGACTCGTCGGGGTTCAATGTTGGCAACTCATGTTTTGATGGGGTTTGGAAAGGATCCATCCACGGGTATAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

192

Amino Acids

22.03

Weight (kDa)

7.06

Isoelectric Point (pI)

45.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015419)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G04830 AT5G04830
malus_domestica MD07G1062000.v1.1
prunus_persica Prupe.2G071800_v2.0.a1
pyrus_communis pycom07g04740
rosa_chinensis RchiOBHm_Chr1g0331851
rosa_laevigata RLG00000029708
rosa_multiflora Rmu_sc0000523.1_g000004
rosa_roxburghii Rroxscaffold_4G00318630
rosa_rugosa Rorug01G0096800 Rorug01G0096800
rosa_samantha Rh1AG120900 Rh1BG092400 Rh1CG115700 Rh1DG126800
rosa_wichuraiana Rw1G009830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 489
AciI CCGC 3 cut(s) 53, 476, 487
AclWI GGATC 5 cut(s) 45, 129, 142, 548, 561
AcoI YGGCCR 1 cut(s) 484
AcsI RAATTY 1 cut(s) 74
AfiI CCNNNNNNNGG 4 cut(s) 145, 482, 493, 563
AgsI TTSAA 4 cut(s) 84, 161, 217, 516
AjnI CCWGG 1 cut(s) 307
AleI CACNNNNGTG 1 cut(s) 199
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
Alw21I GWGCWC 1 cut(s) 208
AlwI GGATC 5 cut(s) 45, 129, 142, 548, 561
AoxI GGCC 2 cut(s) 147, 484
ApeKI GCWGC 1 cut(s) 57
ApoI RAATTY 1 cut(s) 74
AspS9I GGNCC 1 cut(s) 190
AsuHPI GGTGA 1 cut(s) 297
AvaII GGWCC 1 cut(s) 190
BamHI GGATCC 2 cut(s) 134, 553
BauI CACGAG 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 44
BccI CCATC 2 cut(s) 532, 565
BceAI ACGGC 1 cut(s) 162
BciT130I CCWGG 1 cut(s) 309
BfmI CTRYAG 1 cut(s) 166
BglII AGATCT 1 cut(s) 252
BisI GCNGC 2 cut(s) 58, 487
BlsI GCNGC 2 cut(s) 59, 488
Bme1390I CCNGG 1 cut(s) 309
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 1 cut(s) 190
BmiI GGNNCC 3 cut(s) 136, 192, 555
BmrFI CCNGG 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 561
Bsc4I CCNNNNNNNGG 4 cut(s) 145, 482, 493, 563
BseBI CCWGG 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 561
BseGI GGATG 1 cut(s) 557
BseLI CCNNNNNNNGG 4 cut(s) 145, 482, 493, 563
BseXI GCAGC 1 cut(s) 44
Bsh1236I CGCG 1 cut(s) 489
BshFI GGCC 2 cut(s) 149, 486
BsiHKAI GWGCWC 1 cut(s) 208
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 4 cut(s) 145, 482, 493, 563
BsmFI GGGAC 1 cut(s) 449
BsnI GGCC 2 cut(s) 149, 486
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 5 cut(s) 37, 134, 222, 252, 553
BspACI CCGC 3 cut(s) 53, 476, 487
BspANI GGCC 2 cut(s) 149, 486
BspFNI CGCG 1 cut(s) 489
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 3 cut(s) 136, 192, 555
BspPI GGATC 5 cut(s) 45, 129, 142, 548, 561
BssECI CCNNGG 1 cut(s) 561
BssMI GATC 5 cut(s) 37, 134, 222, 252, 553
BssSI CACGAG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 207
Bst2UI CCWGG 1 cut(s) 309
Bst4CI ACNGT 2 cut(s) 170, 466
Bst6I CTCTTC 2 cut(s) 21, 38
BstC8I GCNNGC 2 cut(s) 55, 70
BstDSI CCRYGG 1 cut(s) 561
BstF5I GGATG 1 cut(s) 557
BstFNI CGCG 1 cut(s) 489
BstKTI GATC 5 cut(s) 40, 137, 225, 255, 556
BstMBI GATC 5 cut(s) 37, 134, 222, 252, 553
BstNI CCWGG 1 cut(s) 309
BstNSI RCATGY 1 cut(s) 72
BstSCI CCNGG 1 cut(s) 307
BstSFI CTRYAG 1 cut(s) 166
BstUI CGCG 1 cut(s) 489
BstV1I GCAGC 1 cut(s) 44
BstX2I RGATCY 3 cut(s) 134, 252, 553
BstYI RGATCY 3 cut(s) 134, 252, 553
BsuRI GGCC 2 cut(s) 149, 486
BtgI CCRYGG 1 cut(s) 561
BtsCI GGATG 1 cut(s) 557
BtsIMutI CAGTG 1 cut(s) 194
Cac8I GCNNGC 2 cut(s) 55, 70
CciI TCATGA 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 190
CspCI CAANNNNNGTGG 2 cut(s) 255, 290
CviAII CATG 5 cut(s) 69, 317, 355, 422, 530
CviJI RGCY 4 cut(s) 57, 149, 445, 486
CviKI_1 RGCY 4 cut(s) 57, 149, 445, 486
DpnI GATC 5 cut(s) 39, 136, 224, 254, 555
DpnII GATC 5 cut(s) 37, 134, 222, 252, 553
EaeI YGGCCR 1 cut(s) 484
Eam1104I CTCTTC 2 cut(s) 21, 38
EarI CTCTTC 2 cut(s) 21, 38
Eco32I GATATC 1 cut(s) 378
Eco47I GGWCC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 1 cut(s) 307
EcoRV GATATC 1 cut(s) 378
FaeI CATG 5 cut(s) 72, 320, 358, 425, 533
FaqI GGGAC 1 cut(s) 449
FatI CATG 5 cut(s) 68, 316, 354, 421, 529
FauI CCCGC 1 cut(s) 46
Fnu4HI GCNGC 2 cut(s) 58, 487
FokI GGATG 1 cut(s) 544
Fsp4HI GCNGC 2 cut(s) 58, 487
GluI GCNGC 2 cut(s) 58, 487
HaeIII GGCC 2 cut(s) 149, 486
Hin1II CATG 5 cut(s) 72, 320, 358, 425, 533
HinfI GANTC 2 cut(s) 263, 502
HphI GGTGA 1 cut(s) 297
Hpy188I TCNGA 3 cut(s) 42, 100, 154
Hpy188III TCNNGA 3 cut(s) 84, 267, 317
Hpy99I CGWCG 1 cut(s) 510
HpyAV CCTTC 1 cut(s) 398
HpyCH4III ACNGT 2 cut(s) 170, 466
HpyCH4IV ACGT 1 cut(s) 366
HpyCH4V TGCA 3 cut(s) 60, 143, 394
HpySE526I ACGT 1 cut(s) 366
Hsp92II CATG 5 cut(s) 72, 320, 358, 425, 533
Kzo9I GATC 5 cut(s) 37, 134, 222, 252, 553
LmnI GCTCC 1 cut(s) 65
LpnPI CCDG 2 cut(s) 294, 321
Lsp1109I GCAGC 1 cut(s) 44
MaeII ACGT 1 cut(s) 366
MalI GATC 5 cut(s) 39, 136, 224, 254, 555
MboI GATC 5 cut(s) 37, 134, 222, 252, 553
MboII GAAGA 3 cut(s) 38, 55, 437
MflI RGATCY 3 cut(s) 134, 252, 553
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 3 cut(s) 74, 270, 389
MlyI GAGTC 1 cut(s) 496
MnlI CCTC 5 cut(s) 39, 123, 160, 181, 456
MseI TTAA 2 cut(s) 123, 468
MslI CAYNNNNRTG 1 cut(s) 199
MspA1I CMGCKG 1 cut(s) 478
MspR9I CCNGG 1 cut(s) 309
MvaI CCWGG 1 cut(s) 309
MvnI CGCG 1 cut(s) 489
NdeII GATC 5 cut(s) 37, 134, 222, 252, 553
NlaIII CATG 5 cut(s) 72, 320, 358, 425, 533
NlaIV GGNNCC 3 cut(s) 136, 192, 555
NspI RCATGY 1 cut(s) 72
OliI CACNNNNGTG 1 cut(s) 199
PaeI GCATGC 1 cut(s) 72
PagI TCATGA 1 cut(s) 316
PfeI GAWTC 1 cut(s) 263
PkrI GCNGC 2 cut(s) 59, 488
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
PpuMI RGGWCCY 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 307
PspGI CCWGG 1 cut(s) 307
PspN4I GGNNCC 3 cut(s) 136, 192, 555
PspPI GGNCC 1 cut(s) 190
PspPPI RGGWCCY 1 cut(s) 190
PsuI RGATCY 3 cut(s) 134, 252, 553
RseI CAYNNNNRTG 1 cut(s) 199
SaqAI TTAA 2 cut(s) 123, 468
SatI GCNGC 2 cut(s) 58, 487
Sau3AI GATC 5 cut(s) 37, 134, 222, 252, 553
Sau96I GGNCC 1 cut(s) 190
SchI GAGTC 1 cut(s) 496
ScrFI CCNGG 1 cut(s) 309
SduI GDGCHC 1 cut(s) 208
SetI ASST 4 cut(s) 96, 129, 369, 399
SfcI CTRYAG 1 cut(s) 166
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 199
SphI GCATGC 1 cut(s) 72
Sse9I AATT 3 cut(s) 74, 270, 389
SsiI CCGC 3 cut(s) 53, 476, 487
StyD4I CCNGG 1 cut(s) 307
TaaI ACNGT 2 cut(s) 170, 466
TaiI ACGT 1 cut(s) 369
TasI AATT 3 cut(s) 74, 270, 389
TauI GCSGC 1 cut(s) 489
TfiI GAWTC 1 cut(s) 263
Tru1I TTAA 2 cut(s) 123, 468
Tru9I TTAA 2 cut(s) 123, 468
TscAI CASTG 1 cut(s) 201
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 2 cut(s) 343, 438
TspRI CASTG 1 cut(s) 201
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 1 cut(s) 74
XceI RCATGY 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.