AT5G04920

Vacuolar protein sorting-associated protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
1438959 .. 1442017
3059 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G04920.1

Sequence Viewer

Length: 1323 bp
ATGGCTAGTGGAAGCAGCAGCATCGCAATCGGTGGTTTGTTTGAGAACGCGGAGGTGACTACGAGTGGTAGACCAGTGCTTCGTCGCAATGAGGTCGAATGTTTCCTCCTCTCCTCCATCGATATAGATTCCGAAGATGATCCGCCGCGATTCACAGCTTTGAGGTCTGGAAATCTAATCCTTACCACTCATCGTCTCATATGGATTCCTTCTCAATCAAACGAATCTGTTCCTTCTTCGATTCCGCTCTCCGCCGTTACTCACATCTATTCCCATAAGAAATCAATCAAGTCTATGTTCCATTCGCCTAGAATCCGATTTCAAGCGGATCCCGGTTCGATTGTTGTAACGATTGTGTTTAGAGGGAAAGGGGATTTTGATGGCTTTTTGTCGAAATTGTGGGAATGTTGGAGAGGTAGGGCATGGGAAGAAGAGGAGAAGAGCGAGAGTGAGACTTCAAAGTCAGGATCTGGAACAGTTGCGCAAGGTTTGTATGGAAACGATGGAACGGTGAGGATGGTGGGATTGGCTGGGATTTTGAGGAAGGAGCAAGAACAGTGGGAGAGCACAGATAAGAGCTTGCAAGATGCTTTTCAGGATTTGAATGCTCTTATGAGTAAGGCTAAAGAGATGGTGAGTCTGGCAGAGAAAATGCGGCAGAAGCTTTTGTCTGCTCCTAGTAGTCAGAACGGTTCAACTGATGATGAAGAAATGGGGTCCAAAGAAGAAATGCAACAGTGGATGTTGAGCGTTGGTATTATCTCACCAGTTACAAAGGAATCTGCTGGTGCATTGTACCACCAAGAATTGTCCCGCCAGTTGGCAGATTTTGTCAGAATCCCATTAGAAAAAGCTGGGGGAATGATCAGCCTTACTGATATGTATTACCACTTCAACCGAGCTCGTGGGACAGAGTTGATTTCCCCAGACGATTTGTGGCAAGCTTGTACCCTCTGGGAGAAATTTGATGTTCCAGTAATGCTGCGGAAGTTTGATAGCGGTGTGATGGTCATCCAAAACAAGTCTCACAGCGACGAAGAGGTTATGAGTAGAATCAGAATGCTTGTGACAAAAACTGAAACTCTTAGAGTTGGAGTTACTGCTAGTGATGCAGCTTTGACGCTAAAGATTGCTCCTGCCATGGCTAAGGAACATCTACTATCTGCAGAGACCAAAGGTTTGCTATGTAGAGACATGAGCCCAGATGGGCTTCGATTCTATTTCAACCTGTTTCCCGAGATTGATCCAACCAATCTCCATATAGTCAAGGAGTTTGGGACATACGGTGAATGGATCAAAGCGACCAGTTTGTTGTCTGTATGA

Protein Analysis

440

Amino Acids

49.03

Weight (kDa)

5.54

Isoelectric Point (pI)

53.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps36_ESCRT-II PF11605 18 - 110 1.7e-22 Vacuolar protein sorting protein 36 Vps36
EAP30 PF04157 174 - 398 9.9e-60 EAP30/Vps36 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 460
Acc16I TGCGCA 1 cut(s) 483
AccBSI CCGCTC 1 cut(s) 247
AccI GTMKAC 1 cut(s) 70
AccII CGCG 2 cut(s) 50, 148
AclWI GGATC 6 cut(s) 134, 323, 336, 475, 1238, 1301
AcsI RAATTY 1 cut(s) 962
AfaI GTAC 2 cut(s) 797, 949
AfiI CCNNNNNNNGG 1 cut(s) 820
AgsI TTSAA 6 cut(s) 323, 459, 604, 696, 895, 1225
AluBI AGCT 7 cut(s) 158, 579, 664, 854, 902, 944, 1115
AluI AGCT 7 cut(s) 158, 579, 664, 854, 902, 944, 1115
Alw21I GWGCWC 2 cut(s) 569, 904
Alw26I GTCTC 5 cut(s) 200, 446, 1029, 1163, 1185
AlwI GGATC 6 cut(s) 134, 323, 336, 475, 1238, 1301
AlwNI CAGNNNCTG 1 cut(s) 470
Ama87I CYCGRG 1 cut(s) 1235
ApeKI GCWGC 4 cut(s) 15, 18, 982, 1112
ApoI RAATTY 1 cut(s) 962
ArsI GACNNNNNNTTYG 4 cut(s) 63, 95, 1162, 1194
Asp700I GAANNNNTTC 1 cut(s) 228
AspLEI GCGC 1 cut(s) 484
AspS9I GGNCC 1 cut(s) 717
AsuC2I CCSGG 1 cut(s) 333
AsuHPI GGTGA 5 cut(s) 67, 523, 646, 756, 1298
AvaI CYCGRG 1 cut(s) 1235
AvaII GGWCC 1 cut(s) 717
BamHI GGATCC 1 cut(s) 328
BanII GRGCYC 2 cut(s) 904, 1202
BarI GAAGNNNNNNTAC 2 cut(s) 875, 907
BauI CACGAG 1 cut(s) 903
Bbv12I GWGCWC 2 cut(s) 569, 904
BbvI GCAGC 4 cut(s) 27, 30, 969, 1124
BccI CCATC 7 cut(s) 125, 374, 497, 511, 625, 1000, 1199
BceAI ACGGC 1 cut(s) 239
BcgI CGANNNNNNTGC 6 cut(s) 4, 10, 38, 44, 76, 110
BclI TGATCA 1 cut(s) 864
BcnI CCSGG 1 cut(s) 333
BcoDI GTCTC 5 cut(s) 200, 446, 1029, 1163, 1185
BfaI CTAG 4 cut(s) 6, 309, 678, 1104
BfmI CTRYAG 1 cut(s) 1164
BisI GCNGC 6 cut(s) 16, 19, 146, 656, 983, 1113
BlsI GCNGC 6 cut(s) 17, 20, 147, 657, 984, 1114
Bme1390I CCNGG 1 cut(s) 333
Bme18I GGWCC 1 cut(s) 717
BmeT110I CYCGRG 1 cut(s) 1235
BmgT120I GGNCC 1 cut(s) 717
BmiI GGNNCC 2 cut(s) 330, 718
BmrFI CCNGG 1 cut(s) 333
BmsI GCATC 3 cut(s) 30, 577, 1099
Bpu10I CCTNAGC 1 cut(s) 1146
BpuMI CCSGG 1 cut(s) 333
Bsa29I ATCGAT 1 cut(s) 120
BsaBI GATNNNNATC 1 cut(s) 1010
BsaI GGTCTC 1 cut(s) 1163
BsaJI CCNNGG 1 cut(s) 1140
Bsc4I CCNNNNNNNGG 1 cut(s) 820
Bse1I ACTGG 5 cut(s) 74, 767, 817, 974, 1305
Bse3DI GCAATG 1 cut(s) 94
Bse8I GATNNNNATC 1 cut(s) 1010
BseCI ATCGAT 1 cut(s) 120
BseDI CCNNGG 1 cut(s) 1140
BseGI GGATG 3 cut(s) 522, 747, 1011
BseJI GATNNNNATC 1 cut(s) 1010
BseLI CCNNNNNNNGG 1 cut(s) 820
BseMI GCAATG 1 cut(s) 94
BseNI ACTGG 5 cut(s) 74, 767, 817, 974, 1305
BseRI GAGGAG 3 cut(s) 98, 103, 449
BseXI GCAGC 4 cut(s) 27, 30, 969, 1124
BseYI CCCAGC 2 cut(s) 530, 854
Bsh1236I CGCG 2 cut(s) 50, 148
BshVI ATCGAT 1 cut(s) 120
BsiHKAI GWGCWC 2 cut(s) 569, 904
BsiHKCI CYCGRG 1 cut(s) 1235
BsiSI CCGG 1 cut(s) 333
BslFI GGGAC 3 cut(s) 796, 922, 1291
BslI CCNNNNNNNGG 1 cut(s) 820
BsmAI GTCTC 5 cut(s) 200, 446, 1029, 1163, 1185
BsmBI CGTCTC 1 cut(s) 200
BsmFI GGGAC 3 cut(s) 796, 922, 1291
BsmI GAATGC 2 cut(s) 610, 1065
Bso31I GGTCTC 1 cut(s) 1163
BsoBI CYCGRG 1 cut(s) 1235
Bsp1286I GDGCHC 3 cut(s) 569, 904, 1202
Bsp143I GATC 6 cut(s) 139, 328, 467, 864, 1243, 1293
Bsp19I CCATGG 1 cut(s) 1140
BspDI ATCGAT 1 cut(s) 120
BspFNI CGCG 2 cut(s) 50, 148
BspLI GGNNCC 2 cut(s) 330, 718
BspMAI CTGCAG 1 cut(s) 1168
BspPI GGATC 6 cut(s) 134, 323, 336, 475, 1238, 1301
BspQI GCTCTTC 1 cut(s) 434
BspTNI GGTCTC 1 cut(s) 1163
BsrBI CCGCTC 1 cut(s) 247
BsrDI GCAATG 1 cut(s) 94
BsrI ACTGG 5 cut(s) 74, 767, 817, 974, 1305
BssECI CCNNGG 1 cut(s) 1140
BssMI GATC 6 cut(s) 139, 328, 467, 864, 1243, 1293
BssSI CACGAG 1 cut(s) 903
BssT1I CCWWGG 1 cut(s) 1140
Bst2BI CACGAG 1 cut(s) 903
Bst4CI ACNGT 6 cut(s) 478, 511, 558, 692, 738, 1286
Bst6I CTCTTC 3 cut(s) 426, 434, 1032
BstC8I GCNNGC 2 cut(s) 581, 942
BstDEI CTNAG 2 cut(s) 1085, 1146
BstDSI CCRYGG 1 cut(s) 1140
BstF5I GGATG 3 cut(s) 522, 747, 1011
BstFNI CGCG 2 cut(s) 50, 148
BstHHI GCGC 1 cut(s) 484
BstKTI GATC 6 cut(s) 142, 331, 470, 867, 1246, 1296
BstMAI GTCTC 5 cut(s) 200, 446, 1029, 1163, 1185
BstMBI GATC 6 cut(s) 139, 328, 467, 864, 1243, 1293
BstMWI GCNNNNNNNGC 2 cut(s) 661, 1109
BstSCI CCNGG 1 cut(s) 331
BstSFI CTRYAG 1 cut(s) 1164
BstUI CGCG 2 cut(s) 50, 148
BstV1I GCAGC 4 cut(s) 27, 30, 969, 1124
BstX2I RGATCY 2 cut(s) 328, 467
BstYI RGATCY 2 cut(s) 328, 467
Bsu15I ATCGAT 1 cut(s) 120
BsuTUI ATCGAT 1 cut(s) 120
BtgI CCRYGG 1 cut(s) 1140
BtgZI GCGATG 1 cut(s) 7
BtsCI GGATG 3 cut(s) 522, 747, 1011
BtsIMutI CAGTG 3 cut(s) 81, 563, 743
Cac8I GCNNGC 2 cut(s) 581, 942
CaiI CAGNNNCTG 1 cut(s) 470
CfoI GCGC 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 717
ClaI ATCGAT 1 cut(s) 120
CseI GACGC 1 cut(s) 1129
Csp6I GTAC 2 cut(s) 796, 948
CspCI CAANNNNNGTGG 2 cut(s) 539, 574
CviAII CATG 3 cut(s) 423, 1141, 1195
CviQI GTAC 2 cut(s) 796, 948
DdeI CTNAG 2 cut(s) 1085, 1146
DpnI GATC 6 cut(s) 141, 330, 469, 866, 1245, 1295
DpnII GATC 6 cut(s) 139, 328, 467, 864, 1243, 1293
DrdI GACNNNNNNGTC 1 cut(s) 460
DseDI GACNNNNNNGTC 1 cut(s) 460
Eam1104I CTCTTC 3 cut(s) 426, 434, 1032
EarI CTCTTC 3 cut(s) 426, 434, 1032
EciI GGCGGA 2 cut(s) 132, 241
Ecl136II GAGCTC 1 cut(s) 902
Eco130I CCWWGG 1 cut(s) 1140
Eco24I GRGCYC 2 cut(s) 904, 1202
Eco31I GGTCTC 1 cut(s) 1163
Eco47I GGWCC 1 cut(s) 717
Eco53kI GAGCTC 1 cut(s) 902
Eco88I CYCGRG 1 cut(s) 1235
EcoICRI GAGCTC 1 cut(s) 902
EcoT14I CCWWGG 1 cut(s) 1140
EcoT38I GRGCYC 2 cut(s) 904, 1202
ErhI CCWWGG 1 cut(s) 1140
Esp3I CGTCTC 1 cut(s) 200
FaeI CATG 3 cut(s) 426, 1144, 1198
FaqI GGGAC 3 cut(s) 796, 922, 1291
FatI CATG 3 cut(s) 422, 1140, 1194
FauI CCCGC 1 cut(s) 821
FauNDI CATATG 1 cut(s) 200
FbaI TGATCA 1 cut(s) 864
FblI GTMKAC 1 cut(s) 70
Fnu4HI GCNGC 6 cut(s) 16, 19, 146, 656, 983, 1113
FokI GGATG 3 cut(s) 529, 754, 998
FriOI GRGCYC 2 cut(s) 904, 1202
Fsp4HI GCNGC 6 cut(s) 16, 19, 146, 656, 983, 1113
FspBI CTAG 4 cut(s) 6, 309, 678, 1104
FspI TGCGCA 1 cut(s) 483
GlaI GCGC 1 cut(s) 483
GluI GCNGC 6 cut(s) 16, 19, 146, 656, 983, 1113
GsaI CCCAGC 2 cut(s) 534, 858
HapII CCGG 1 cut(s) 333
HgaI GACGC 1 cut(s) 1129
HhaI GCGC 1 cut(s) 484
Hin1II CATG 3 cut(s) 426, 1144, 1198
Hin6I GCGC 1 cut(s) 482
HinP1I GCGC 1 cut(s) 482
HindIII AAGCTT 2 cut(s) 662, 942
HpaII CCGG 1 cut(s) 333
HphI GGTGA 5 cut(s) 67, 523, 646, 756, 1298
Hpy166II GTNNAC 1 cut(s) 71
Hpy188I TCNGA 5 cut(s) 133, 317, 687, 836, 1058
Hpy188III TCNNGA 5 cut(s) 168, 465, 471, 596, 1235
Hpy8I GTNNAC 1 cut(s) 71
Hpy99I CGWCG 2 cut(s) 87, 1037
HpyAV CCTTC 3 cut(s) 219, 243, 538
HpyCH4III ACNGT 6 cut(s) 478, 511, 558, 692, 738, 1286
HpyCH4V TGCA 5 cut(s) 583, 733, 791, 1112, 1166
HpyF10VI GCNNNNNNNGC 2 cut(s) 661, 1109
HpyF3I CTNAG 2 cut(s) 1085, 1146
Hsp92II CATG 3 cut(s) 426, 1144, 1198
HspAI GCGC 1 cut(s) 482
Ksp22I TGATCA 1 cut(s) 864
Kzo9I GATC 6 cut(s) 139, 328, 467, 864, 1243, 1293
LguI GCTCTTC 1 cut(s) 434
LmnI GCTCC 3 cut(s) 547, 679, 1138
Lsp1109I GCAGC 4 cut(s) 27, 30, 969, 1124
LweI GCATC 3 cut(s) 30, 577, 1099
MaeI CTAG 4 cut(s) 6, 309, 678, 1104
MaeIII GTNAC 6 cut(s) 55, 256, 346, 769, 1066, 1096
MalI GATC 6 cut(s) 141, 330, 469, 866, 1245, 1295
MbiI CCGCTC 1 cut(s) 247
MboI GATC 6 cut(s) 139, 328, 467, 864, 1243, 1293
MboII GAAGA 8 cut(s) 146, 228, 440, 443, 451, 719, 737, 1049
MflI RGATCY 2 cut(s) 328, 467
MhlI GDGCHC 3 cut(s) 569, 904, 1202
MluCI AATT 3 cut(s) 395, 806, 962
MlyI GAGTC 1 cut(s) 646
MmeI TCCRAC 3 cut(s) 389, 1072, 1271
MroXI GAANNNNTTC 1 cut(s) 228
MspI CCGG 1 cut(s) 333
MspR9I CCNGG 1 cut(s) 333
Mva1269I GAATGC 2 cut(s) 610, 1065
MvnI CGCG 2 cut(s) 50, 148
MwoI GCNNNNNNNGC 2 cut(s) 661, 1109
NciI CCSGG 1 cut(s) 333
NcoI CCATGG 1 cut(s) 1140
NdeI CATATG 1 cut(s) 200
NdeII GATC 6 cut(s) 139, 328, 467, 864, 1243, 1293
NlaIII CATG 3 cut(s) 426, 1144, 1198
NlaIV GGNNCC 2 cut(s) 330, 718
NmuCI GTSAC 2 cut(s) 55, 1066
NsbI TGCGCA 1 cut(s) 483
PciSI GCTCTTC 1 cut(s) 434
PctI GAATGC 2 cut(s) 610, 1065
PdmI GAANNNNTTC 1 cut(s) 228
PkrI GCNGC 6 cut(s) 17, 20, 147, 657, 984, 1114
PleI GAGTC 1 cut(s) 645
PpsI GAGTC 1 cut(s) 645
Psp124BI GAGCTC 1 cut(s) 904
PspFI CCCAGC 2 cut(s) 530, 854
PspN4I GGNNCC 2 cut(s) 330, 718
PspPI GGNCC 1 cut(s) 717
PstI CTGCAG 1 cut(s) 1168
PstNI CAGNNNCTG 1 cut(s) 470
PsuI RGATCY 2 cut(s) 328, 467
RsaI GTAC 2 cut(s) 797, 949
RsaNI GTAC 2 cut(s) 796, 948
SacI GAGCTC 1 cut(s) 904
SapI GCTCTTC 1 cut(s) 434
SatI GCNGC 6 cut(s) 16, 19, 146, 656, 983, 1113
Sau3AI GATC 6 cut(s) 139, 328, 467, 864, 1243, 1293
Sau96I GGNCC 1 cut(s) 717
SchI GAGTC 1 cut(s) 646
ScrFI CCNGG 1 cut(s) 333
SduI GDGCHC 3 cut(s) 569, 904, 1202
SfaNI GCATC 3 cut(s) 30, 577, 1099
SfcI CTRYAG 1 cut(s) 1164
SinI GGWCC 1 cut(s) 717
Sse9I AATT 3 cut(s) 395, 806, 962
SspMI CTAG 4 cut(s) 6, 309, 678, 1104
SstI GAGCTC 1 cut(s) 904
StyD4I CCNGG 1 cut(s) 331
StyI CCWWGG 1 cut(s) 1140
TaaI ACNGT 6 cut(s) 478, 511, 558, 692, 738, 1286
TaqI TCGA 6 cut(s) 96, 120, 239, 338, 392, 1213
TasI AATT 3 cut(s) 395, 806, 962
TauI GCSGC 2 cut(s) 148, 658
TscAI CASTG 3 cut(s) 81, 563, 743
TseFI GTSAC 2 cut(s) 55, 1066
TseI GCWGC 4 cut(s) 15, 18, 982, 1112
Tsp45I GTSAC 2 cut(s) 55, 1066
TspDTI ATGAA 1 cut(s) 720
TspRI CASTG 3 cut(s) 81, 563, 743
VpaK11BI GGWCC 1 cut(s) 717
XapI RAATTY 1 cut(s) 962
XcmI CCANNNNNNNNNTGG 1 cut(s) 933
XmiI GTMKAC 1 cut(s) 70
XmnI GAANNNNTTC 1 cut(s) 228
XspI CTAG 4 cut(s) 6, 309, 678, 1104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.