FvH4_4g11870

Vacuolar protein sorting-associated protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
15584526 .. 15593008
8483 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g11870.t1

Sequence Viewer

Length: 1302 bp
ATGGCTGGAAATTGCCTTGAAGTGGTGGAGCTAACAAGCAGTGGACGCCCAGTCCTCCTCCCATCAGAGATTGAATGTTCACTCCTCTCTGCTGTAGACCTCGAATGTGAAGAACTCCCCAACTTTCCTAACCTCAAATCGGCTATCCTCACCCTCACCACCCACCGCCTCTTGTGGCTCCCTGACTCCTCTTCACAAGGAGCCTCTTCAGCCATCCCACTCGCCTCCATCACCCACATCTTCTCTGCCAAAAAATCCCTCAAGTCCATGTTCGCCTCGCCTCGAATCCGGTTCCAGCTTTCAGTGTCACCCGACGGCCGGGTTTCGAGTTCAGGTTCAGGTTCCAGGTCCATCGTCGTTACAGTGGTTGTGAGGGGGAAGGGTGCTGATTTGGATGTGTTTTTGACCAAGTTTTGGGATAACTGGCGAGGAAGAGCCTGGGAGACTGGGAATGCTGATGTCACTTCAGGCTCTGTGTCTGGTTCTGGGTCAACTTCTTCTGGGTTATACACTAAGGAAGGAACGGTGAGGATGGTCGGGGTGTCTGGAATACTCAGGAAGGAACAAGAGATGTGGGAGACTACTGATAAGAGCTTGCAGGACGCTTTCCAGGACTTGAATGCTCTCATGAGTAAAGCTAAAGAGATGGTGTTGCTAGCAGAGAAAATGAGGCAAAAGCTTTTATCCAGCTCGACTTCTCAGCCTAGTGCAGCAGAGGACGAGGAATTGGGTTCCAAACAAGAAATGCAAGACTGGTTACTTAGTGTTGGTATTATCTCGCCTGTCACCAAAGAGTCTGCTGGTGCTCTTTACCACCAACAATTGTCACGTCAGTTGGCAGATTTTGTCAGGCTTCCACTTGAGAGAGCTGGAGGAATGATGAATCTTATAGATATTTACTGTCTCTTCAATCGTGCTCGAGGAACAGAATTGATCTCGCCAGAGGATTTGCTTCAAGCATGTGTTCTGTGGGAGAAGTTTGATGTCCCAGTAATGCTTCGGAAGTTTGATAGTGGGGTCATGGTAATCCAGAATAAGTCCCACAGTGATGAAGAGCCCGATGCTCTTCGAACTGGTATAAGTGCGAGAGATGCTGCAATCACGGTAGGTATTGCGCCAGGCATGGCCAAGGAGCATCTTCTAACTGCTGAAAGCAAAGGCTATCTATGCAGGGATATTAGCGCAGATGGTTTTCGGTTTTATATTAACCTGTTTCCAGAAATCGACCCAAACAATGTTTACTTAGTAAAAGATTATGGAGTCTATGACACATGGTTAAGTGTGGCATCTGCTTCTGGATGA

Protein Analysis

434

Amino Acids

47.25

Weight (kDa)

5.21

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps36_ESCRT-II PF11605 10 - 100 5.3e-11 Vacuolar protein sorting protein 36 Vps36
EAP30 PF04157 179 - 392 3.2e-53 EAP30/Vps36 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 414
AccI GTMKAC 1 cut(s) 96
AciI CCGC 1 cut(s) 166
AcoI YGGCCR 2 cut(s) 316, 1125
AcuI CTGAAG 2 cut(s) 192, 450
AcyI GRCGYC 1 cut(s) 46
AfiI CCNNNNNNNGG 4 cut(s) 22, 139, 318, 414
AgsI TTSAA 5 cut(s) 20, 74, 619, 910, 956
AhdI GACNNNNNGTC 1 cut(s) 50
AjiI CACGTC 1 cut(s) 830
AjnI CCWGG 4 cut(s) 344, 437, 609, 1117
AluBI AGCT 7 cut(s) 31, 298, 594, 638, 679, 690, 869
AluI AGCT 7 cut(s) 31, 298, 594, 638, 679, 690, 869
Alw21I GWGCWC 2 cut(s) 808, 919
Alw26I GTCTC 3 cut(s) 437, 572, 908
AlwNI CAGNNNCTG 1 cut(s) 473
Ama87I CYCGRG 1 cut(s) 918
AoxI GGCC 2 cut(s) 316, 1125
ApeKI GCWGC 2 cut(s) 710, 1094
AspLEI GCGC 2 cut(s) 1117, 1184
AspS9I GGNCC 1 cut(s) 348
AsuC2I CCSGG 1 cut(s) 320
AsuHPI GGTGA 6 cut(s) 142, 148, 223, 300, 538, 778
AsuII TTCGAA 1 cut(s) 1069
AsuNHI GCTAGC 1 cut(s) 655
AvaI CYCGRG 1 cut(s) 918
AvaII GGWCC 1 cut(s) 348
BalI TGGCCA 1 cut(s) 1127
BanII GRGCYC 1 cut(s) 1059
Bbv12I GWGCWC 2 cut(s) 808, 919
BbvI GCAGC 2 cut(s) 722, 1081
BccI CCATC 7 cut(s) 70, 221, 236, 359, 526, 640, 1181
BceAI ACGGC 1 cut(s) 331
BciT130I CCWGG 4 cut(s) 346, 439, 611, 1119
BcnI CCSGG 1 cut(s) 320
BcoDI GTCTC 3 cut(s) 437, 572, 908
BfaI CTAG 2 cut(s) 656, 705
BfmI CTRYAG 1 cut(s) 93
BisI GCNGC 2 cut(s) 711, 1095
BlsI GCNGC 2 cut(s) 712, 1096
Bme1390I CCNGG 5 cut(s) 320, 346, 439, 611, 1119
Bme18I GGWCC 1 cut(s) 348
BmeRI GACNNNNNGTC 1 cut(s) 50
BmeT110I CYCGRG 1 cut(s) 918
BmgBI CACGTC 1 cut(s) 830
BmgT120I GGNCC 1 cut(s) 348
BmiI GGNNCC 5 cut(s) 179, 202, 293, 343, 733
BmrFI CCNGG 5 cut(s) 320, 346, 439, 611, 1119
BmrI ACTGGG 3 cut(s) 44, 456, 983
BmsI GCATC 4 cut(s) 1051, 1081, 1144, 1295
BmtI GCTAGC 1 cut(s) 659
BmuI ACTGGG 3 cut(s) 44, 456, 983
BpmI CTGGAG 1 cut(s) 891
Bpu14I TTCGAA 1 cut(s) 1069
BpuEI CTTGAG 2 cut(s) 245, 881
BpuMI CCSGG 1 cut(s) 320
BsaHI GRCGYC 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 438, 1128
BsaWI WCCGGW 1 cut(s) 288
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 139, 318, 414
Bse1I ACTGG 6 cut(s) 50, 428, 451, 758, 989, 1078
BseBI CCWGG 4 cut(s) 346, 439, 611, 1119
BseDI CCNNGG 2 cut(s) 438, 1128
BseGI GGATG 3 cut(s) 213, 400, 537
BseLI CCNNNNNNNGG 4 cut(s) 22, 139, 318, 414
BseMII CTCAG 2 cut(s) 568, 713
BseNI ACTGG 6 cut(s) 50, 428, 451, 758, 989, 1078
BseRI GAGGAG 3 cut(s) 47, 74, 178
BseX3I CGGCCG 1 cut(s) 316
BseXI GCAGC 2 cut(s) 722, 1081
BsgI GTGCAG 1 cut(s) 729
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 2 cut(s) 318, 1127
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 808, 919
BsiHKCI CYCGRG 1 cut(s) 918
BsiSI CCGG 2 cut(s) 289, 319
BslFI GGGAC 2 cut(s) 971, 1024
BslI CCNNNNNNNGG 4 cut(s) 22, 139, 318, 414
BsmAI GTCTC 3 cut(s) 437, 572, 908
BsmFI GGGAC 2 cut(s) 971, 1024
BsmI GAATGC 2 cut(s) 457, 625
BsnI GGCC 2 cut(s) 318, 1127
BsoBI CYCGRG 1 cut(s) 918
Bsp119I TTCGAA 1 cut(s) 1069
Bsp1286I GDGCHC 3 cut(s) 808, 919, 1059
Bsp143I GATC 1 cut(s) 933
BspACI CCGC 1 cut(s) 166
BspANI GGCC 2 cut(s) 318, 1127
BspCNI CTCAG 2 cut(s) 567, 712
BspHI TCATGA 1 cut(s) 627
BspLI GGNNCC 5 cut(s) 179, 202, 293, 343, 733
BspOI GCTAGC 1 cut(s) 659
BspQI GCTCTTC 3 cut(s) 427, 1047, 1071
BspT104I TTCGAA 1 cut(s) 1069
BsrI ACTGG 6 cut(s) 50, 428, 451, 758, 989, 1078
BssECI CCNNGG 2 cut(s) 438, 1128
BssMI GATC 1 cut(s) 933
BssNI GRCGYC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 1128
Bst2UI CCWGG 4 cut(s) 346, 439, 611, 1119
Bst4CI ACNGT 5 cut(s) 364, 526, 902, 1046, 1105
Bst6I CTCTTC 6 cut(s) 196, 211, 427, 911, 1047, 1071
BstACI GRCGYC 1 cut(s) 46
BstBI TTCGAA 1 cut(s) 1069
BstC8I GCNNGC 2 cut(s) 596, 657
BstDEI CTNAG 5 cut(s) 513, 554, 699, 761, 1243
BstF5I GGATG 3 cut(s) 213, 400, 537
BstHHI GCGC 2 cut(s) 1117, 1184
BstKTI GATC 1 cut(s) 936
BstMAI GTCTC 3 cut(s) 437, 572, 908
BstMBI GATC 1 cut(s) 933
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 4 cut(s) 45, 209, 1091, 1167
BstNI CCWGG 4 cut(s) 346, 439, 611, 1119
BstNSI RCATGY 1 cut(s) 963
BstSCI CCNGG 5 cut(s) 318, 344, 437, 609, 1117
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 2 cut(s) 722, 1081
BstZI CGGCCG 1 cut(s) 316
BsuRI GGCC 2 cut(s) 318, 1127
BtrI CACGTC 1 cut(s) 830
BtsCI GGATG 3 cut(s) 213, 400, 537
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 4 cut(s) 46, 309, 369, 1051
Cac8I GCNNGC 2 cut(s) 596, 657
CaiI CAGNNNCTG 1 cut(s) 473
CciI TCATGA 1 cut(s) 627
CfoI GCGC 2 cut(s) 1117, 1184
Cfr13I GGNCC 1 cut(s) 348
CseI GACGC 2 cut(s) 54, 611
CspCI CAANNNNNGTGG 2 cut(s) 554, 589
CviAII CATG 6 cut(s) 268, 628, 960, 1021, 1123, 1272
DdeI CTNAG 5 cut(s) 513, 554, 699, 761, 1243
DpnI GATC 1 cut(s) 935
DpnII GATC 1 cut(s) 933
DriI GACNNNNNGTC 1 cut(s) 50
EaeI YGGCCR 2 cut(s) 316, 1125
EagI CGGCCG 1 cut(s) 316
Eam1104I CTCTTC 6 cut(s) 196, 211, 427, 911, 1047, 1071
Eam1105I GACNNNNNGTC 1 cut(s) 50
EarI CTCTTC 6 cut(s) 196, 211, 427, 911, 1047, 1071
EclXI CGGCCG 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 1128
Eco24I GRGCYC 1 cut(s) 1059
Eco47I GGWCC 1 cut(s) 348
Eco52I CGGCCG 1 cut(s) 316
Eco57I CTGAAG 2 cut(s) 192, 450
Eco88I CYCGRG 1 cut(s) 918
EcoRII CCWGG 4 cut(s) 344, 437, 609, 1117
EcoT14I CCWWGG 1 cut(s) 1128
EcoT38I GRGCYC 1 cut(s) 1059
ErhI CCWWGG 1 cut(s) 1128
FaeI CATG 6 cut(s) 271, 631, 963, 1024, 1126, 1275
FaqI GGGAC 2 cut(s) 971, 1024
FatI CATG 6 cut(s) 267, 627, 959, 1020, 1122, 1271
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 2 cut(s) 711, 1095
FokI GGATG 3 cut(s) 200, 407, 544
FriOI GRGCYC 1 cut(s) 1059
Fsp4HI GCNGC 2 cut(s) 711, 1095
FspBI CTAG 2 cut(s) 656, 705
GlaI GCGC 2 cut(s) 1116, 1183
GluI GCNGC 2 cut(s) 711, 1095
GsuI CTGGAG 1 cut(s) 891
HaeIII GGCC 2 cut(s) 318, 1127
HapII CCGG 2 cut(s) 289, 319
HgaI GACGC 2 cut(s) 54, 611
HhaI GCGC 2 cut(s) 1117, 1184
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 6 cut(s) 271, 631, 963, 1024, 1126, 1275
Hin6I GCGC 2 cut(s) 1115, 1182
HinP1I GCGC 2 cut(s) 1115, 1182
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HindIII AAGCTT 1 cut(s) 677
HinfI GANTC 5 cut(s) 185, 285, 794, 883, 1260
HpaII CCGG 2 cut(s) 289, 319
HphI GGTGA 6 cut(s) 142, 148, 223, 300, 538, 778
Hpy166II GTNNAC 5 cut(s) 44, 80, 97, 492, 1240
Hpy188I TCNGA 2 cut(s) 67, 1002
Hpy188III TCNNGA 6 cut(s) 546, 556, 628, 1030, 1217, 1296
Hpy8I GTNNAC 5 cut(s) 44, 80, 97, 492, 1240
Hpy99I CGWCG 2 cut(s) 317, 359
HpyAV CCTTC 3 cut(s) 373, 512, 553
HpyCH4III ACNGT 5 cut(s) 364, 526, 902, 1046, 1105
HpyCH4IV ACGT 1 cut(s) 829
HpyCH4V TGCA 5 cut(s) 598, 710, 748, 1097, 1170
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 209, 1091, 1167
HpyF3I CTNAG 5 cut(s) 513, 554, 699, 761, 1243
HpySE526I ACGT 1 cut(s) 829
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 6 cut(s) 271, 631, 963, 1024, 1126, 1275
HspAI GCGC 2 cut(s) 1115, 1182
Kzo9I GATC 1 cut(s) 933
LguI GCTCTTC 3 cut(s) 427, 1047, 1071
LmnI GCTCC 4 cut(s) 28, 183, 200, 1132
Lsp1109I GCAGC 2 cut(s) 722, 1081
LweI GCATC 4 cut(s) 1051, 1081, 1144, 1295
MaeI CTAG 2 cut(s) 656, 705
MaeII ACGT 1 cut(s) 829
MaeIII GTNAC 6 cut(s) 306, 358, 460, 756, 784, 825
MalI GATC 1 cut(s) 935
MboI GATC 1 cut(s) 933
MfeI CAATTG 1 cut(s) 821
MhlI GDGCHC 3 cut(s) 808, 919, 1059
MlsI TGGCCA 1 cut(s) 1127
MluCI AATT 4 cut(s) 10, 725, 821, 929
MluNI TGGCCA 1 cut(s) 1127
MlyI GAGTC 3 cut(s) 179, 803, 1269
Mox20I TGGCCA 1 cut(s) 1127
MscI TGGCCA 1 cut(s) 1127
MseI TTAA 2 cut(s) 1206, 1277
MslI CAYNNNNRTG 1 cut(s) 1047
Msp20I TGGCCA 1 cut(s) 1127
MspI CCGG 2 cut(s) 289, 319
MspR9I CCNGG 5 cut(s) 320, 346, 439, 611, 1119
MunI CAATTG 1 cut(s) 821
Mva1269I GAATGC 2 cut(s) 457, 625
MvaI CCWGG 4 cut(s) 346, 439, 611, 1119
MwoI GCNNNNNNNGC 4 cut(s) 45, 209, 1091, 1167
NciI CCSGG 1 cut(s) 320
NdeII GATC 1 cut(s) 933
NheI GCTAGC 1 cut(s) 655
NlaIII CATG 6 cut(s) 271, 631, 963, 1024, 1126, 1275
NlaIV GGNNCC 5 cut(s) 179, 202, 293, 343, 733
NmuCI GTSAC 4 cut(s) 306, 460, 784, 825
NspI RCATGY 1 cut(s) 963
NspV TTCGAA 1 cut(s) 1069
PaeR7I CTCGAG 1 cut(s) 918
PagI TCATGA 1 cut(s) 627
PciSI GCTCTTC 3 cut(s) 427, 1047, 1071
PctI GAATGC 2 cut(s) 457, 625
PfeI GAWTC 2 cut(s) 285, 883
PflMI CCANNNNNTGG 1 cut(s) 414
PfoI TCCNGGA 1 cut(s) 609
PkrI GCNGC 2 cut(s) 712, 1096
PleI GAGTC 3 cut(s) 179, 802, 1268
PpsI GAGTC 3 cut(s) 179, 802, 1268
Psp6I CCWGG 4 cut(s) 344, 437, 609, 1117
PspGI CCWGG 4 cut(s) 344, 437, 609, 1117
PspN4I GGNNCC 5 cut(s) 179, 202, 293, 343, 733
PspPI GGNCC 1 cut(s) 348
PspXI VCTCGAGB 1 cut(s) 918
PstNI CAGNNNCTG 1 cut(s) 473
RseI CAYNNNNRTG 1 cut(s) 1047
SapI GCTCTTC 3 cut(s) 427, 1047, 1071
SaqAI TTAA 2 cut(s) 1206, 1277
SatI GCNGC 2 cut(s) 711, 1095
Sau3AI GATC 1 cut(s) 933
Sau96I GGNCC 1 cut(s) 348
SchI GAGTC 3 cut(s) 179, 803, 1269
ScrFI CCNGG 5 cut(s) 320, 346, 439, 611, 1119
SduI GDGCHC 3 cut(s) 808, 919, 1059
SfaNI GCATC 4 cut(s) 1051, 1081, 1144, 1295
SfcI CTRYAG 1 cut(s) 93
Sfr274I CTCGAG 1 cut(s) 918
SfuI TTCGAA 1 cut(s) 1069
SinI GGWCC 1 cut(s) 348
SlaI CTCGAG 1 cut(s) 918
SmiMI CAYNNNNRTG 1 cut(s) 1047
SmlI CTYRAG 3 cut(s) 260, 860, 918
SmoI CTYRAG 3 cut(s) 260, 860, 918
Sse9I AATT 4 cut(s) 10, 725, 821, 929
SsiI CCGC 1 cut(s) 166
SspMI CTAG 2 cut(s) 656, 705
StyD4I CCNGG 5 cut(s) 318, 344, 437, 609, 1117
StyI CCWWGG 1 cut(s) 1128
TaaI ACNGT 5 cut(s) 364, 526, 902, 1046, 1105
TaiI ACGT 1 cut(s) 832
TaqI TCGA 7 cut(s) 102, 283, 326, 692, 919, 1069, 1224
TasI AATT 4 cut(s) 10, 725, 821, 929
TfiI GAWTC 2 cut(s) 285, 883
Tru1I TTAA 2 cut(s) 1206, 1277
Tru9I TTAA 2 cut(s) 1206, 1277
TscAI CASTG 4 cut(s) 46, 309, 369, 1051
TseFI GTSAC 4 cut(s) 306, 460, 784, 825
TseI GCWGC 2 cut(s) 710, 1094
Tsp45I GTSAC 4 cut(s) 306, 460, 784, 825
TspDTI ATGAA 2 cut(s) 896, 1065
TspRI CASTG 4 cut(s) 46, 309, 369, 1051
Van91I CCANNNNNTGG 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 348
XceI RCATGY 1 cut(s) 963
XhoI CTCGAG 1 cut(s) 918
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 2 cut(s) 656, 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.