Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003167

Physical Location & Seq

Genomic Coordinates Forward (+)

15128826 .. 15129125

Gene Structure 300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0092800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCAGGTACAACAAATCCATTCCATCGCAGACTATTCCGAGCCCTTGATCAAGCTCATGGAGTCTCTGCCACCGCATGATAGGGTCATCCTAGTAGGGCACAGCTTGGGTGGGCTCCCGATATCTCTTCTCATGGAGAGGTTCCCTAGTAAAATTGCTGCTGCAGTTTTTGCCACCGCTAGCATGCCTGGTCTAAATATCAGTTTGGCCACTATATCTGAAGAGATAAATAGTTCTACACATGCATATGTTTTTGGAGTACAGACACTACAGGGTGATATTAAGAAAAAGTATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000814 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005770 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007033 GO:0007034 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010008 GO:0010154 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0032182 GO:0032501 GO:0032502 GO:0032509 GO:0032511 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0036452 GO:0042886 GO:0043130 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045324 GO:0046907 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0061458 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0090351 GO:0097708 GO:0098588 GO:0098796 GO:0098805 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

EAP30 Vps36_ESCRT-II

Protein Analysis

99

Amino Acids

10.81

Weight (kDa)

6.39

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Abhydrolase_1	PF00561	10 - 63	3.5e-07	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003167)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04920
fragaria_vesca	FvH4_4g11870 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040 FvH4_7g05040
malus_domestica	MD02G1263600.v1.1 MD07G1054600.v1.1
prunus_persica	Prupe.2G061300_v2.0.a1 Prupe.2G061300_v2.0.a1 Prupe.2G061300_v2.0.a1
pyrus_communis	pycom02g22580 pycom07g04240
rosa_chinensis	RchiOBHm_Chr1g0331361
rosa_laevigata	RLG00000029741
rosa_multiflora	Rmu_sc0005956.1_g000008
rosa_roxburghii	Rroxscaffold_4G00319220
rosa_rugosa	Rorug01G0092800
rosa_samantha	Rh1AG117800 Rh1BG088500 Rh1CG112700 Rh1DG121600
rosa_wichuraiana	Rw1G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	74, 177
AcoI	YGGCCR	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	240
AfaI	GTAC	2 cut(s)	9, 261
AjnI	CCWGG	1 cut(s)	187
AluBI	AGCT	2 cut(s)	55, 105
AluI	AGCT	2 cut(s)	55, 105
Alw26I	GTCTC	1 cut(s)	69
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	2 cut(s)	158, 161
AsuHPI	GGTGA	1 cut(s)	287
AsuNHI	GCTAGC	1 cut(s)	179
BaeGI	GKGCMC	1 cut(s)	102
BalI	TGGCCA	1 cut(s)	209
BanII	GRGCYC	2 cut(s)	45, 117
BbvI	GCAGC	2 cut(s)	145, 148
BccI	CCATC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	189
BclI	TGATCA	1 cut(s)	48
BcoDI	GTCTC	1 cut(s)	69
BfaI	CTAG	3 cut(s)	92, 147, 180
BfmI	CTRYAG	2 cut(s)	162, 269
BisI	GCNGC	2 cut(s)	159, 162
BlsI	GCNGC	2 cut(s)	160, 163
Bme1390I	CCNGG	1 cut(s)	189
BmiI	GGNNCC	2 cut(s)	116, 143
BmrFI	CCNGG	1 cut(s)	189
BmtI	GCTAGC	1 cut(s)	183
BseBI	CCWGG	1 cut(s)	189
BseGI	GGATG	1 cut(s)	87
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	145, 148
BshFI	GGCC	1 cut(s)	209
BsmAI	GTCTC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	3 cut(s)	45, 102, 117
Bsp143I	GATC	1 cut(s)	48
BspACI	CCGC	2 cut(s)	74, 177
BspANI	GGCC	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	116, 143
BspMAI	CTGCAG	1 cut(s)	166
BspOI	GCTAGC	1 cut(s)	183
BssMI	GATC	1 cut(s)	48
Bst2UI	CCWGG	1 cut(s)	189
Bst6I	CTCTTC	2 cut(s)	132, 216
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	2 cut(s)	181, 185
BstF5I	GGATG	1 cut(s)	87
BstKTI	GATC	1 cut(s)	51
BstMAI	GTCTC	1 cut(s)	69
BstMBI	GATC	1 cut(s)	48
BstMWI	GCNNNNNNNGC	1 cut(s)	170
BstNI	CCWGG	1 cut(s)	189
BstNSI	RCATGY	2 cut(s)	187, 245
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	2 cut(s)	162, 269
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	145, 148
BsuRI	GGCC	1 cut(s)	209
BtgZI	GCGATG	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	87
Cac8I	GCNNGC	2 cut(s)	181, 185
Csp6I	GTAC	2 cut(s)	8, 260
CviAII	CATG	5 cut(s)	58, 77, 133, 184, 242
CviJI	RGCY	5 cut(s)	43, 55, 105, 115, 209
CviKI_1	RGCY	5 cut(s)	43, 55, 105, 115, 209
CviQI	GTAC	2 cut(s)	8, 260
DpnI	GATC	1 cut(s)	50
DpnII	GATC	1 cut(s)	48
EaeI	YGGCCR	1 cut(s)	207
Eam1104I	CTCTTC	2 cut(s)	132, 216
EarI	CTCTTC	2 cut(s)	132, 216
Eco24I	GRGCYC	2 cut(s)	45, 117
Eco32I	GATATC	1 cut(s)	123
Eco57I	CTGAAG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	187
EcoRV	GATATC	1 cut(s)	123
EcoT22I	ATGCAT	1 cut(s)	247
EcoT38I	GRGCYC	2 cut(s)	45, 117
FaeI	CATG	5 cut(s)	61, 80, 136, 187, 245
FaiI	YATR	8 cut(s)	59, 78, 134, 185, 215, 243, 247, 249
FatI	CATG	5 cut(s)	57, 76, 132, 183, 241
FauNDI	CATATG	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	2 cut(s)	159, 162
FokI	GGATG	1 cut(s)	74
FriOI	GRGCYC	2 cut(s)	45, 117
Fsp4HI	GCNGC	2 cut(s)	159, 162
FspBI	CTAG	3 cut(s)	92, 147, 180
GluI	GCNGC	2 cut(s)	159, 162
HaeIII	GGCC	1 cut(s)	209
Hin1II	CATG	5 cut(s)	61, 80, 136, 187, 245
HinfI	GANTC	1 cut(s)	62
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	2 cut(s)	40, 220
Hpy188III	TCNNGA	1 cut(s)	118
HpyCH4V	TGCA	3 cut(s)	4, 164, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	170
Hsp92II	CATG	5 cut(s)	61, 80, 136, 187, 245
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	1 cut(s)	48
LmnI	GCTCC	1 cut(s)	120
LpnPI	CCDG	3 cut(s)	174, 201, 257
Lsp1109I	GCAGC	2 cut(s)	145, 148
MaeI	CTAG	3 cut(s)	92, 147, 180
MalI	GATC	1 cut(s)	50
MboI	GATC	1 cut(s)	48
MboII	GAAGA	2 cut(s)	119, 233
MhlI	GDGCHC	3 cut(s)	45, 102, 117
MlsI	TGGCCA	1 cut(s)	209
MluCI	AATT	1 cut(s)	153
MluNI	TGGCCA	1 cut(s)	209
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	1 cut(s)	132
Mox20I	TGGCCA	1 cut(s)	209
Mph1103I	ATGCAT	1 cut(s)	247
MscI	TGGCCA	1 cut(s)	209
MseI	TTAA	1 cut(s)	282
MslI	CAYNNNNRTG	1 cut(s)	246
Msp20I	TGGCCA	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	170
NdeI	CATATG	1 cut(s)	247
NdeII	GATC	1 cut(s)	48
NheI	GCTAGC	1 cut(s)	179
NlaIII	CATG	5 cut(s)	61, 80, 136, 187, 245
NlaIV	GGNNCC	2 cut(s)	116, 143
NsiI	ATGCAT	1 cut(s)	247
NspI	RCATGY	2 cut(s)	187, 245
PaeI	GCATGC	1 cut(s)	187
PkrI	GCNGC	2 cut(s)	160, 163
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
Psp6I	CCWGG	1 cut(s)	187
PspGI	CCWGG	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	116, 143
PstI	CTGCAG	1 cut(s)	166
RsaI	GTAC	2 cut(s)	9, 261
RsaNI	GTAC	2 cut(s)	8, 260
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	2 cut(s)	159, 162
Sau3AI	GATC	1 cut(s)	48
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	3 cut(s)	45, 102, 117
SetI	ASST	4 cut(s)	9, 57, 107, 143
SfcI	CTRYAG	2 cut(s)	162, 269
SmiMI	CAYNNNNRTG	1 cut(s)	246
SphI	GCATGC	1 cut(s)	187
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	2 cut(s)	74, 177
SspMI	CTAG	3 cut(s)	92, 147, 180
StyD4I	CCNGG	1 cut(s)	187
TasI	AATT	1 cut(s)	153
TatI	WGTACW	1 cut(s)	259
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseI	GCWGC	2 cut(s)	158, 161
XceI	RCATGY	2 cut(s)	187, 245
XspI	CTAG	3 cut(s)	92, 147, 180
Zsp2I	ATGCAT	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.