pycom07g04240

Vacuolar protein sorting-associated protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
3668302 .. 3671762
3461 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g04240.2

Sequence Viewer

Length: 1341 bp
ATGGCCGGGAACTGCCTGCAAGCCGCGGAGCTAACCACGAGCGGCCGCCCAGTCCTTCTCCCAACTGAGATCGAATGTTCCCTCCTTTCCGCCGTAGACCTCGAATGCGAAGATCTCCCCAACTTCCCTCACCTCAAATCGGGTCTCCTCATTCTCACCACCCACCGCCTCTTATGGCTTCCCGACTCCACCACCACAATAGCCACGGCCTCTTCTTCAGCCTCCGCCATCCCTCTCGCTGCCATCACCCACATCTTTGCCGCCAAAAAGTCAATCAAGTCCATGTTCGCCTCGCCCCGGTTCAGGTTCCAGCTCTCGGTTTCGCCCGAAGGCCGGGTTCCGGATTCGGGTTCGGGTTCGAGGTCGGTGGTTGTGACGGTGGTGGTGAGGGGGAAGGGCGATTTGGACGCGTTTTTGAGCAAATTTTGGGAGAGCTGGCGGGGTAGAGCCTGGGAGATTGGGGATGAGCCGGGCAGCTCCGATGCGGTTTCGGGTTCCGGTTCGGCGTCCAGCTCCGGGTTGTATACGAGGGAAGGGACGGTGAGGATGGTTGGAGTTTCGGGGATATTGAGGAAAGAACAGGAGATGTGGGAGAGTACCGATAAGAGCTTGCAGGACGCTTTCCAGGACTTGAATGCTCTCATGAGTAAGGCTAAAGAGATGGTGATGCTAGCAGAAAAAATGAGGCAGAAGCTTTTATCTGGCTCGACTTCGCAGCCAAATGACGAGGAATTGGGTTCCAAACAAGAGATGCAGGATTGGATGCTGAGTGTTGGTATTATTTCGCCCGTCACTAAGGAGTCTGCTGGTGCTCAGTATCACCAACAATTGTCCCGTCAGTTAGCAGATTTTGTCAGGCTTCCACTTGAGAAAGCTGGAGGAATGATGAATCTCATAGACATCTACTGTCTCTTCAATCGTGCTCGCGGCACAGAACTGATCTCACCAGAGGATTTGCTGCAAGCGTGTTCTCTTTGGGAGAAGTTTGACGTCCCAGTAATGCTTCGTAAGTTTGATAGTGGAGTCATGGTCATCCAGAATAAGTCCCACAGTGACGAAGAGGTTTTTGCTAGAATCAAGACCCTTGTAACAAAGCCTGATGCTCTTCGAACTGGGATAAGTGCTAGTGATGCTGCAATTACATTAGGTATTGCACCAGGCATGGCCAAGGAGCATCTTCTTACTGCTGAAAGCAAAGGTTTGCTGTGCAGAGATATAAGCCCTGATGGCTTTCGCTTTTATATCAACCTGTTTCCAGAATTCGATTCAGATGACTTGTACCTAGTGAAAGACTATGGAATCTATCACACATGGTTGAGGGCGGTGTCTGCTTCTGGATGA

Protein Analysis

447

Amino Acids

48.79

Weight (kDa)

5.45

Isoelectric Point (pI)

48.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 993
AccBSI CCGCTC 1 cut(s) 42
AccI GTMKAC 2 cut(s) 96, 524
AccII CGCG 3 cut(s) 26, 410, 927
AccIII TCCGGA 1 cut(s) 340
AcoI YGGCCR 3 cut(s) 3, 43, 1164
AcsI RAATTY 2 cut(s) 422, 1259
AcuI CTGAAG 1 cut(s) 201
AcyI GRCGYC 2 cut(s) 506, 990
AfaI GTAC 2 cut(s) 598, 1280
AfiI CCNNNNNNNGG 8 cut(s) 139, 297, 303, 316, 333, 340, 347, 516
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 2 cut(s) 634, 916
AjnI CCWGG 3 cut(s) 449, 624, 1156
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AluBI AGCT 8 cut(s) 31, 313, 435, 477, 513, 609, 694, 875
AluI AGCT 8 cut(s) 31, 313, 435, 477, 513, 609, 694, 875
Alw21I GWGCWC 2 cut(s) 814, 925
Alw26I GTCTC 2 cut(s) 149, 914
Aor13HI TCCGGA 1 cut(s) 340
AoxI GGCC 5 cut(s) 3, 43, 207, 331, 1164
ApeKI GCWGC 5 cut(s) 239, 474, 715, 958, 1133
ApoI RAATTY 2 cut(s) 422, 1259
AsuC2I CCSGG 5 cut(s) 7, 298, 335, 471, 517
AsuHPI GGTGA 8 cut(s) 122, 148, 238, 397, 553, 676, 812, 936
AsuII TTCGAA 1 cut(s) 1108
AsuNHI GCTAGC 1 cut(s) 670
BalI TGGCCA 1 cut(s) 1166
BauI CACGAG 1 cut(s) 37
Bbv12I GWGCWC 2 cut(s) 814, 925
BbvI GCAGC 5 cut(s) 226, 486, 727, 945, 1120
BccI CCATC 5 cut(s) 236, 251, 541, 655, 1220
BceAI ACGGC 2 cut(s) 77, 222
BciT130I CCWGG 3 cut(s) 451, 626, 1158
BcnI CCSGG 5 cut(s) 7, 298, 335, 471, 517
BcoDI GTCTC 2 cut(s) 149, 914
BfaI CTAG 4 cut(s) 671, 1071, 1125, 1283
BglI GCCNNNNNGGC 1 cut(s) 1227
BglII AGATCT 1 cut(s) 112
Bme1390I CCNGG 8 cut(s) 7, 298, 335, 451, 471, 517, 626, 1158
BmiI GGNNCC 4 cut(s) 308, 339, 496, 739
BmrFI CCNGG 8 cut(s) 7, 298, 335, 451, 471, 517, 626, 1158
BmrI ACTGGG 3 cut(s) 44, 989, 1122
BmsI GCATC 7 cut(s) 472, 657, 741, 753, 1090, 1120, 1183
BmtI GCTAGC 1 cut(s) 674
BmuI ACTGGG 3 cut(s) 44, 989, 1122
BpmI CTGGAG 1 cut(s) 897
Bpu14I TTCGAA 1 cut(s) 1108
BpuEI CTTGAG 1 cut(s) 887
BpuMI CCSGG 5 cut(s) 7, 298, 335, 471, 517
BsaHI GRCGYC 2 cut(s) 506, 990
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 5 cut(s) 24, 204, 296, 450, 1167
BsaWI WCCGGW 2 cut(s) 340, 497
BsaXI ACNNNNNCTCC 2 cut(s) 1014, 1044
Bsc4I CCNNNNNNNGG 8 cut(s) 139, 297, 303, 316, 333, 340, 347, 516
Bse1I ACTGG 3 cut(s) 50, 995, 1117
BseAI TCCGGA 1 cut(s) 340
BseBI CCWGG 3 cut(s) 451, 626, 1158
BseDI CCNNGG 5 cut(s) 24, 204, 296, 450, 1167
BseGI GGATG 5 cut(s) 228, 469, 552, 768, 1032
BseLI CCNNNNNNNGG 8 cut(s) 139, 297, 303, 316, 333, 340, 347, 516
BseMII CTCAG 3 cut(s) 57, 758, 827
BseNI ACTGG 3 cut(s) 50, 995, 1117
BseRI GAGGAG 1 cut(s) 137
BseX3I CGGCCG 1 cut(s) 43
BseXI GCAGC 5 cut(s) 226, 486, 727, 945, 1120
BsgI GTGCAG 1 cut(s) 1228
Bsh1236I CGCG 3 cut(s) 26, 410, 927
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 5 cut(s) 5, 45, 209, 333, 1166
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 814, 925
BsiSI CCGG 7 cut(s) 6, 298, 334, 341, 470, 498, 516
BslFI GGGAC 4 cut(s) 550, 817, 977, 1030
BslI CCNNNNNNNGG 8 cut(s) 139, 297, 303, 316, 333, 340, 347, 516
BsmAI GTCTC 2 cut(s) 149, 914
BsmFI GGGAC 4 cut(s) 550, 817, 977, 1030
BsmI GAATGC 2 cut(s) 110, 640
BsnI GGCC 5 cut(s) 5, 45, 209, 333, 1166
Bso31I GGTCTC 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 1108
Bsp1286I GDGCHC 2 cut(s) 814, 925
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 3 cut(s) 69, 112, 939
BspANI GGCC 5 cut(s) 5, 45, 209, 333, 1166
BspCNI CTCAG 3 cut(s) 58, 759, 826
BspEI TCCGGA 1 cut(s) 340
BspFNI CGCG 3 cut(s) 26, 410, 927
BspHI TCATGA 1 cut(s) 642
BspLI GGNNCC 4 cut(s) 308, 339, 496, 739
BspOI GCTAGC 1 cut(s) 674
BspQI GCTCTTC 1 cut(s) 1110
BspT104I TTCGAA 1 cut(s) 1108
BspTNI GGTCTC 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 42
BsrI ACTGG 3 cut(s) 50, 995, 1117
BssECI CCNNGG 5 cut(s) 24, 204, 296, 450, 1167
BssMI GATC 3 cut(s) 69, 112, 939
BssNAI GTATAC 1 cut(s) 525
BssNI GRCGYC 2 cut(s) 506, 990
BssSI CACGAG 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 1167
Bst1107I GTATAC 1 cut(s) 525
Bst2BI CACGAG 1 cut(s) 37
Bst2UI CCWGG 3 cut(s) 451, 626, 1158
Bst4CI ACNGT 4 cut(s) 379, 541, 908, 1052
Bst6I CTCTTC 4 cut(s) 217, 917, 1053, 1110
BstACI GRCGYC 2 cut(s) 506, 990
BstBI TTCGAA 1 cut(s) 1108
BstC8I GCNNGC 7 cut(s) 17, 21, 437, 611, 672, 925, 963
BstDEI CTNAG 4 cut(s) 66, 767, 795, 813
BstDSI CCRYGG 2 cut(s) 24, 204
BstF5I GGATG 5 cut(s) 228, 469, 552, 768, 1032
BstFNI CGCG 3 cut(s) 26, 410, 927
BstKTI GATC 3 cut(s) 72, 115, 942
BstMAI GTCTC 2 cut(s) 149, 914
BstMBI GATC 3 cut(s) 69, 112, 939
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 3 cut(s) 1130, 1227, 1328
BstNI CCWGG 3 cut(s) 451, 626, 1158
BstSCI CCNGG 8 cut(s) 5, 296, 333, 449, 469, 515, 624, 1156
BstUI CGCG 3 cut(s) 26, 410, 927
BstV1I GCAGC 5 cut(s) 226, 486, 727, 945, 1120
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BstZ17I GTATAC 1 cut(s) 525
BstZI CGGCCG 1 cut(s) 43
BsuRI GGCC 5 cut(s) 5, 45, 209, 333, 1166
BtgI CCRYGG 2 cut(s) 24, 204
BtsCI GGATG 5 cut(s) 228, 469, 552, 768, 1032
BtsIMutI CAGTG 1 cut(s) 1057
Cac8I GCNNGC 7 cut(s) 17, 21, 437, 611, 672, 925, 963
CciI TCATGA 1 cut(s) 642
CciNI GCGGCCGC 1 cut(s) 43
Cfr42I CCGCGG 1 cut(s) 27
CseI GACGC 3 cut(s) 416, 495, 626
Csp6I GTAC 2 cut(s) 597, 1279
CviAII CATG 5 cut(s) 283, 643, 1027, 1162, 1311
CviQI GTAC 2 cut(s) 597, 1279
DdeI CTNAG 4 cut(s) 66, 767, 795, 813
DpnI GATC 3 cut(s) 71, 114, 941
DpnII GATC 3 cut(s) 69, 112, 939
EaeI YGGCCR 3 cut(s) 3, 43, 1164
EagI CGGCCG 1 cut(s) 43
Eam1104I CTCTTC 4 cut(s) 217, 917, 1053, 1110
EarI CTCTTC 4 cut(s) 217, 917, 1053, 1110
EciI GGCGGA 2 cut(s) 79, 214
EclXI CGGCCG 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 1167
Eco31I GGTCTC 1 cut(s) 149
Eco52I CGGCCG 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 201
EcoRI GAATTC 1 cut(s) 1259
EcoRII CCWGG 3 cut(s) 449, 624, 1156
EcoT14I CCWWGG 1 cut(s) 1167
ErhI CCWWGG 1 cut(s) 1167
FaeI CATG 5 cut(s) 286, 646, 1030, 1165, 1314
FaqI GGGAC 4 cut(s) 550, 817, 977, 1030
FatI CATG 5 cut(s) 282, 642, 1026, 1161, 1310
FauI CCCGC 1 cut(s) 432
FblI GTMKAC 2 cut(s) 96, 524
FokI GGATG 5 cut(s) 215, 476, 559, 775, 1019
FspBI CTAG 4 cut(s) 671, 1071, 1125, 1283
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 5 cut(s) 5, 45, 209, 333, 1166
HapII CCGG 7 cut(s) 6, 298, 334, 341, 470, 498, 516
HgaI GACGC 3 cut(s) 416, 495, 626
Hin1I GRCGYC 2 cut(s) 506, 990
Hin1II CATG 5 cut(s) 286, 646, 1030, 1165, 1314
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 8 cut(s) 185, 344, 800, 889, 1023, 1074, 1265, 1299
HpaII CCGG 7 cut(s) 6, 298, 334, 341, 470, 498, 516
HphI GGTGA 8 cut(s) 122, 148, 238, 397, 553, 676, 812, 936
Hpy166II GTNNAC 2 cut(s) 97, 525
Hpy188I TCNGA 2 cut(s) 481, 1270
Hpy188III TCNNGA 7 cut(s) 182, 341, 643, 1036, 1078, 1256, 1335
Hpy8I GTNNAC 2 cut(s) 97, 525
HpyAV CCTTC 4 cut(s) 65, 323, 388, 527
HpyCH4III ACNGT 4 cut(s) 379, 541, 908, 1052
HpyCH4IV ACGT 1 cut(s) 990
HpyCH4V TGCA 7 cut(s) 19, 613, 754, 961, 1136, 1154, 1209
HpyF10VI GCNNNNNNNGC 3 cut(s) 1130, 1227, 1328
HpyF3I CTNAG 4 cut(s) 66, 767, 795, 813
HpySE526I ACGT 1 cut(s) 990
Hsp92I GRCGYC 2 cut(s) 506, 990
Hsp92II CATG 5 cut(s) 286, 646, 1030, 1165, 1314
Kpn2I TCCGGA 1 cut(s) 340
KspI CCGCGG 1 cut(s) 27
Kzo9I GATC 3 cut(s) 69, 112, 939
LguI GCTCTTC 1 cut(s) 1110
LmnI GCTCC 4 cut(s) 28, 482, 518, 1171
Lsp1109I GCAGC 5 cut(s) 226, 486, 727, 945, 1120
LweI GCATC 7 cut(s) 472, 657, 741, 753, 1090, 1120, 1183
MaeI CTAG 4 cut(s) 671, 1071, 1125, 1283
MaeII ACGT 1 cut(s) 990
MaeIII GTNAC 4 cut(s) 373, 790, 1052, 1087
MalI GATC 3 cut(s) 71, 114, 941
MbiI CCGCTC 1 cut(s) 42
MboI GATC 3 cut(s) 69, 112, 939
MboII GAAGA 7 cut(s) 122, 204, 207, 904, 1070, 1097, 1169
MfeI CAATTG 1 cut(s) 827
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 2 cut(s) 814, 925
MlsI TGGCCA 1 cut(s) 1166
MluCI AATT 5 cut(s) 422, 731, 827, 1137, 1259
MluI ACGCGT 1 cut(s) 408
MluNI TGGCCA 1 cut(s) 1166
MlyI GAGTC 3 cut(s) 179, 809, 1032
MmeI TCCRAC 1 cut(s) 532
Mox20I TGGCCA 1 cut(s) 1166
MroI TCCGGA 1 cut(s) 340
MscI TGGCCA 1 cut(s) 1166
Msp20I TGGCCA 1 cut(s) 1166
MspA1I CMGCKG 1 cut(s) 26
MspI CCGG 7 cut(s) 6, 298, 334, 341, 470, 498, 516
MspR9I CCNGG 8 cut(s) 7, 298, 335, 451, 471, 517, 626, 1158
MunI CAATTG 1 cut(s) 827
Mva1269I GAATGC 2 cut(s) 110, 640
MvaI CCWGG 3 cut(s) 451, 626, 1158
MvnI CGCG 3 cut(s) 26, 410, 927
MwoI GCNNNNNNNGC 3 cut(s) 1130, 1227, 1328
NciI CCSGG 5 cut(s) 7, 298, 335, 471, 517
NdeII GATC 3 cut(s) 69, 112, 939
NheI GCTAGC 1 cut(s) 670
NlaIII CATG 5 cut(s) 286, 646, 1030, 1165, 1314
NlaIV GGNNCC 4 cut(s) 308, 339, 496, 739
NmuCI GTSAC 3 cut(s) 373, 790, 1052
NotI GCGGCCGC 1 cut(s) 43
NspV TTCGAA 1 cut(s) 1108
PagI TCATGA 1 cut(s) 642
PciSI GCTCTTC 1 cut(s) 1110
PctI GAATGC 2 cut(s) 110, 640
PfeI GAWTC 5 cut(s) 344, 889, 1074, 1265, 1299
PfoI TCCNGGA 1 cut(s) 624
PleI GAGTC 3 cut(s) 179, 808, 1031
PpsI GAGTC 3 cut(s) 179, 808, 1031
Psp6I CCWGG 3 cut(s) 449, 624, 1156
PspGI CCWGG 3 cut(s) 449, 624, 1156
PspN4I GGNNCC 4 cut(s) 308, 339, 496, 739
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 2 cut(s) 598, 1280
RsaNI GTAC 2 cut(s) 597, 1279
SacII CCGCGG 1 cut(s) 27
SapI GCTCTTC 1 cut(s) 1110
Sau3AI GATC 3 cut(s) 69, 112, 939
SchI GAGTC 3 cut(s) 179, 809, 1032
ScrFI CCNGG 8 cut(s) 7, 298, 335, 451, 471, 517, 626, 1158
SduI GDGCHC 2 cut(s) 814, 925
SfaNI GCATC 7 cut(s) 472, 657, 741, 753, 1090, 1120, 1183
Sfr303I CCGCGG 1 cut(s) 27
SfuI TTCGAA 1 cut(s) 1108
SgrBI CCGCGG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 866
SmoI CTYRAG 1 cut(s) 866
Sse9I AATT 5 cut(s) 422, 731, 827, 1137, 1259
SspMI CTAG 4 cut(s) 671, 1071, 1125, 1283
StyD4I CCNGG 8 cut(s) 5, 296, 333, 449, 469, 515, 624, 1156
StyI CCWWGG 1 cut(s) 1167
TaaI ACNGT 4 cut(s) 379, 541, 908, 1052
TaiI ACGT 1 cut(s) 993
TaqI TCGA 6 cut(s) 72, 102, 359, 707, 1108, 1263
TasI AATT 5 cut(s) 422, 731, 827, 1137, 1259
TauI GCSGC 5 cut(s) 26, 45, 48, 263, 930
TfiI GAWTC 5 cut(s) 344, 889, 1074, 1265, 1299
TscAI CASTG 1 cut(s) 1057
TseFI GTSAC 3 cut(s) 373, 790, 1052
TseI GCWGC 5 cut(s) 239, 474, 715, 958, 1133
Tsp45I GTSAC 3 cut(s) 373, 790, 1052
TspDTI ATGAA 1 cut(s) 902
TspRI CASTG 1 cut(s) 1057
XapI RAATTY 2 cut(s) 422, 1259
XmiI GTMKAC 2 cut(s) 96, 524
XspI CTAG 4 cut(s) 671, 1071, 1125, 1283
ZraI GACGTC 1 cut(s) 991
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.