FvH4_7g05040

Vacuolar protein sorting-associated protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
5448972 .. 5456164
7193 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g05040.t16

Sequence Viewer

Length: 1332 bp
ATGGCCGGAAATTGTCTGGAAGCTGTGGAGCTAACAAGCAGTGGACGCCCTGTCCTACTCCCATCAGAGATTGAGTGTTCGCTCCTCTCTGCTGTAGACCTCGAATGCGAAGACCTCCCCAACTTTCCTAACTTCAAATCGGGTATCCTCACCCTCACCACCCACCGCATTTTATGGGTCTCCAACTCCTCTTCACAAGGAGCCTCTTCTGCCATCCCACTTGCCTCCATTAGCCACATCTTCACATCTAAAAAGTCCCTCAAGTCCATCTTTGCCTCGCCTCGGATCCGGTTCCAGCTTTCGGTGTCACCCGACGGCCGGGTAGCAAAGTCCGGTTCAGGATCCAGGTCCGTCGTCGTTACAGTGGTTGTGAGGGGGAAGGGTGCTGATTTAGACTTGTTTTTGACCAAGTTTTGGGACAACTGGCGGGGAAGAGCGTGGGAGACTGGGAATGCAGATGTCACTTCAGGTTCTGATTCGGTTTCTGGGTCGACTTCTGGGCTATACACCAAGGAAGGAACGGTGAGGATGGTCGGGGTGTCTGGAATACTTAGGAAGGAACAAGAGATGTGGGAGACAACTGATAAGAGCTTGCAGGATGCTTTCCAGGACTTGAATGCTCTCATGAGTAAAGCTAAAGAGATGGTGATGCTAGCAGAAAAAATGAGGCAGAAACTTTTATCCAGCTCGACTTCTCAGAGCAGTGCAGCAGAGGACGGGGAACTGGGTTCCAAACAAGATATGCAAGACTGGTTGTTGAGTGTTGGTATTGTATCGCCTGTCACCAAAGAGTCTGCAGGTGCTCTTTACCACCAACAATTATCCCGTCAGTTGGCAGATTTTGTCAGGCTTCCACTTGAGAGAGCTGGAGGAATGATGAATCTTATAGATATTTACTGTCTCTTCAATCGTGCTCGAGGAACAGAATTGATCTCCCCAGAGGATTTGCTGCAAGCATGTTTTCTTTGGGAGAAGTTTGATGTCCCAGTAATGCTTCGGAAGTTTGATAGTGGTGTGATGGTGATCCAGAATAAGACCCACAGTGATGAAGAGATTTTTGCTAGAATTAAGAGCCTTGCAACAAAGCCCGATGCTCTTCGTACTGGGATAAGTGCGAGTGATGCTGCAATCACACTAGGTATTGCGCCAGGCATGGCGAAGGAGCATCTTCTAACTGCTGAAAGCAGAGGTATTCTCTGCAGGGATATTAGCCCGGATGGCTTTCGCTTTTATATCAACCTGTTTCCAGAAATAGATCCAAACAATGTTTACTTAGTGAAAGATTATGGAGTCTATGACACATGGTCAAGGGTGGCCTCTGCTTCTGGATGA

Protein Analysis

444

Amino Acids

48.39

Weight (kDa)

5.72

Isoelectric Point (pI)

44.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps36_ESCRT-II PF11605 10 - 100 8.5e-14 Vacuolar protein sorting protein 36 Vps36
EAP30 PF04157 178 - 402 1.4e-57 EAP30/Vps36 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 788
Acc36I ACCTGC 1 cut(s) 788
AccB7I CCANNNNNTGG 1 cut(s) 414
AccI GTMKAC 2 cut(s) 96, 491
AciI CCGC 2 cut(s) 166, 427
AclWI GGATC 6 cut(s) 280, 293, 336, 349, 1018, 1250
AcoI YGGCCR 2 cut(s) 3, 316
AcuI CTGAAG 1 cut(s) 450
AcyI GRCGYC 1 cut(s) 46
AfaI GTAC 1 cut(s) 1102
AfiI CCNNNNNNNGG 5 cut(s) 282, 301, 318, 414, 832
AgsI TTSAA 3 cut(s) 136, 616, 907
AhdI GACNNNNNGTC 2 cut(s) 50, 1303
AjnI CCWGG 3 cut(s) 344, 606, 1147
AluBI AGCT 7 cut(s) 23, 31, 298, 591, 635, 687, 866
AluI AGCT 7 cut(s) 23, 31, 298, 591, 635, 687, 866
Alw21I GWGCWC 2 cut(s) 805, 916
Alw26I GTCTC 4 cut(s) 184, 437, 569, 905
AlwI GGATC 6 cut(s) 280, 293, 336, 349, 1018, 1250
AlwNI CAGNNNCTG 1 cut(s) 473
Ama87I CYCGRG 1 cut(s) 915
AoxI GGCC 3 cut(s) 3, 316, 1314
ApeKI GCWGC 3 cut(s) 707, 949, 1124
AspLEI GCGC 1 cut(s) 1147
AspS9I GGNCC 1 cut(s) 348
AsuC2I CCSGG 2 cut(s) 320, 1214
AsuHPI GGTGA 7 cut(s) 142, 148, 300, 535, 658, 775, 1033
AsuNHI GCTAGC 1 cut(s) 652
AvaI CYCGRG 1 cut(s) 915
AvaII GGWCC 1 cut(s) 348
BamHI GGATCC 2 cut(s) 285, 341
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 2 cut(s) 805, 916
BbvI GCAGC 3 cut(s) 719, 936, 1111
BccI CCATC 7 cut(s) 70, 221, 275, 523, 637, 1012, 1211
BceAI ACGGC 1 cut(s) 331
BciT130I CCWGG 3 cut(s) 346, 608, 1149
BciVI GTATCC 1 cut(s) 155
BcnI CCSGG 2 cut(s) 320, 1214
BcoDI GTCTC 4 cut(s) 184, 437, 569, 905
BfaI CTAG 3 cut(s) 653, 1062, 1136
BfmI CTRYAG 3 cut(s) 93, 795, 1198
BfuAI ACCTGC 1 cut(s) 788
BfuI GTATCC 1 cut(s) 155
BglI GCCNNNNNGGC 1 cut(s) 1218
BisI GCNGC 3 cut(s) 708, 950, 1125
BlsI GCNGC 3 cut(s) 709, 951, 1126
Bme1390I CCNGG 5 cut(s) 320, 346, 608, 1149, 1214
Bme18I GGWCC 1 cut(s) 348
BmeRI GACNNNNNGTC 2 cut(s) 50, 1303
BmeT110I CYCGRG 1 cut(s) 915
BmgT120I GGNCC 1 cut(s) 348
BmiI GGNNCC 5 cut(s) 202, 287, 293, 343, 730
BmrFI CCNGG 5 cut(s) 320, 346, 608, 1149, 1214
BmrI ACTGGG 4 cut(s) 456, 734, 980, 1113
BmsI GCATC 5 cut(s) 589, 639, 1081, 1111, 1174
BmtI GCTAGC 1 cut(s) 656
BmuI ACTGGG 4 cut(s) 456, 734, 980, 1113
BpiI GAAGAC 1 cut(s) 117
BplI GAGNNNNNCTC 2 cut(s) 1179, 1211
BpmI CTGGAG 1 cut(s) 888
BpuEI CTTGAG 2 cut(s) 245, 878
BpuMI CCSGG 2 cut(s) 320, 1214
BsaBI GATNNNNATC 1 cut(s) 1022
BsaHI GRCGYC 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 184
BsaJI CCNNGG 2 cut(s) 281, 510
BsaWI WCCGGW 2 cut(s) 288, 332
Bsc4I CCNNNNNNNGG 5 cut(s) 282, 301, 318, 414, 832
Bse1I ACTGG 6 cut(s) 428, 451, 729, 755, 986, 1108
Bse8I GATNNNNATC 1 cut(s) 1022
BseBI CCWGG 3 cut(s) 346, 608, 1149
BseDI CCNNGG 2 cut(s) 281, 510
BseGI GGATG 4 cut(s) 213, 534, 604, 1222
BseJI GATNNNNATC 1 cut(s) 1022
BseLI CCNNNNNNNGG 5 cut(s) 282, 301, 318, 414, 832
BseMII CTCAG 1 cut(s) 710
BseNI ACTGG 6 cut(s) 428, 451, 729, 755, 986, 1108
BseRI GAGGAG 2 cut(s) 74, 178
BseX3I CGGCCG 1 cut(s) 316
BseXI GCAGC 3 cut(s) 719, 936, 1111
BsgI GTGCAG 1 cut(s) 726
Bsh1285I CGRYCG 1 cut(s) 319
BshFI GGCC 3 cut(s) 5, 318, 1316
BsiEI CGRYCG 1 cut(s) 319
BsiHKAI GWGCWC 2 cut(s) 805, 916
BsiHKCI CYCGRG 1 cut(s) 915
BsiSI CCGG 5 cut(s) 6, 289, 319, 333, 1214
BslFI GGGAC 3 cut(s) 241, 431, 968
BslI CCNNNNNNNGG 5 cut(s) 282, 301, 318, 414, 832
BsmAI GTCTC 4 cut(s) 184, 437, 569, 905
BsmFI GGGAC 3 cut(s) 241, 431, 968
BsmI GAATGC 3 cut(s) 110, 457, 622
BsnI GGCC 3 cut(s) 5, 318, 1316
Bso31I GGTCTC 1 cut(s) 184
BsoBI CYCGRG 1 cut(s) 915
Bsp1286I GDGCHC 2 cut(s) 805, 916
Bsp143I GATC 5 cut(s) 285, 341, 930, 1023, 1255
BspACI CCGC 2 cut(s) 166, 427
BspANI GGCC 3 cut(s) 5, 318, 1316
BspCNI CTCAG 1 cut(s) 709
BspHI TCATGA 1 cut(s) 624
BspLI GGNNCC 5 cut(s) 202, 287, 293, 343, 730
BspMAI CTGCAG 2 cut(s) 799, 1202
BspMI ACCTGC 1 cut(s) 788
BspOI GCTAGC 1 cut(s) 656
BspPI GGATC 6 cut(s) 280, 293, 336, 349, 1018, 1250
BspQI GCTCTTC 2 cut(s) 427, 1101
BspTNI GGTCTC 1 cut(s) 184
BsrI ACTGG 6 cut(s) 428, 451, 729, 755, 986, 1108
BssECI CCNNGG 2 cut(s) 281, 510
BssMI GATC 5 cut(s) 285, 341, 930, 1023, 1255
BssNI GRCGYC 1 cut(s) 46
BssT1I CCWWGG 1 cut(s) 510
Bst2UI CCWGG 3 cut(s) 346, 608, 1149
Bst4CI ACNGT 4 cut(s) 364, 523, 899, 1043
Bst6I CTCTTC 6 cut(s) 196, 211, 427, 908, 1044, 1101
BstACI GRCGYC 1 cut(s) 46
BstC8I GCNNGC 3 cut(s) 593, 654, 954
BstDEI CTNAG 3 cut(s) 551, 696, 1273
BstF5I GGATG 4 cut(s) 213, 534, 604, 1222
BstHHI GCGC 1 cut(s) 1147
BstKTI GATC 5 cut(s) 288, 344, 933, 1026, 1258
BstMAI GTCTC 4 cut(s) 184, 437, 569, 905
BstMBI GATC 5 cut(s) 285, 341, 930, 1023, 1255
BstMCI CGRYCG 1 cut(s) 319
BstMWI GCNNNNNNNGC 4 cut(s) 45, 209, 1121, 1218
BstNI CCWGG 3 cut(s) 346, 608, 1149
BstNSI RCATGY 1 cut(s) 960
BstSCI CCNGG 5 cut(s) 318, 344, 606, 1147, 1212
BstSFI CTRYAG 3 cut(s) 93, 795, 1198
BstV1I GCAGC 3 cut(s) 719, 936, 1111
BstV2I GAAGAC 1 cut(s) 117
BstX2I RGATCY 3 cut(s) 285, 341, 1255
BstYI RGATCY 3 cut(s) 285, 341, 1255
BstZI CGGCCG 1 cut(s) 316
BsuI GTATCC 1 cut(s) 155
BsuRI GGCC 3 cut(s) 5, 318, 1316
BtsCI GGATG 4 cut(s) 213, 534, 604, 1222
BtsI GCAGTG 2 cut(s) 46, 709
BtsIMutI CAGTG 4 cut(s) 46, 369, 709, 1048
BveI ACCTGC 1 cut(s) 788
Cac8I GCNNGC 3 cut(s) 593, 654, 954
CaiI CAGNNNCTG 1 cut(s) 473
CciI TCATGA 1 cut(s) 624
CfoI GCGC 1 cut(s) 1147
Cfr13I GGNCC 1 cut(s) 348
CseI GACGC 1 cut(s) 54
Csp6I GTAC 1 cut(s) 1101
CspCI CAANNNNNGTGG 2 cut(s) 551, 586
CviAII CATG 4 cut(s) 625, 957, 1153, 1302
CviQI GTAC 1 cut(s) 1101
DdeI CTNAG 3 cut(s) 551, 696, 1273
DpnI GATC 5 cut(s) 287, 343, 932, 1025, 1257
DpnII GATC 5 cut(s) 285, 341, 930, 1023, 1255
DriI GACNNNNNGTC 2 cut(s) 50, 1303
EaeI YGGCCR 2 cut(s) 3, 316
EagI CGGCCG 1 cut(s) 316
Eam1104I CTCTTC 6 cut(s) 196, 211, 427, 908, 1044, 1101
Eam1105I GACNNNNNGTC 2 cut(s) 50, 1303
EarI CTCTTC 6 cut(s) 196, 211, 427, 908, 1044, 1101
EclXI CGGCCG 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 510
Eco31I GGTCTC 1 cut(s) 184
Eco47I GGWCC 1 cut(s) 348
Eco52I CGGCCG 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 450
Eco88I CYCGRG 1 cut(s) 915
EcoRII CCWGG 3 cut(s) 344, 606, 1147
EcoT14I CCWWGG 1 cut(s) 510
ErhI CCWWGG 1 cut(s) 510
FaeI CATG 4 cut(s) 628, 960, 1156, 1305
FalI AAGNNNNNCTT 2 cut(s) 254, 286
FaqI GGGAC 3 cut(s) 241, 431, 968
FatI CATG 4 cut(s) 624, 956, 1152, 1301
FauI CCCGC 1 cut(s) 420
FblI GTMKAC 2 cut(s) 96, 491
Fnu4HI GCNGC 3 cut(s) 708, 950, 1125
FokI GGATG 4 cut(s) 200, 541, 611, 1229
Fsp4HI GCNGC 3 cut(s) 708, 950, 1125
FspBI CTAG 3 cut(s) 653, 1062, 1136
GlaI GCGC 1 cut(s) 1146
GluI GCNGC 3 cut(s) 708, 950, 1125
GsuI CTGGAG 1 cut(s) 888
HaeIII GGCC 3 cut(s) 5, 318, 1316
HapII CCGG 5 cut(s) 6, 289, 319, 333, 1214
HgaI GACGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 1147
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 4 cut(s) 628, 960, 1156, 1305
Hin6I GCGC 1 cut(s) 1145
HinP1I GCGC 1 cut(s) 1145
HincII GTYRAC 1 cut(s) 492
HindII GTYRAC 1 cut(s) 492
HinfI GANTC 4 cut(s) 476, 791, 880, 1290
HpaII CCGG 5 cut(s) 6, 289, 319, 333, 1214
HphI GGTGA 7 cut(s) 142, 148, 300, 535, 658, 775, 1033
Hpy166II GTNNAC 4 cut(s) 44, 97, 492, 1270
Hpy188I TCNGA 5 cut(s) 67, 285, 475, 699, 999
Hpy188III TCNNGA 7 cut(s) 17, 339, 543, 625, 1027, 1247, 1326
Hpy8I GTNNAC 4 cut(s) 44, 97, 492, 1270
Hpy99I CGWCG 3 cut(s) 317, 356, 359
HpyAV CCTTC 4 cut(s) 373, 509, 550, 1153
HpyCH4III ACNGT 4 cut(s) 364, 523, 899, 1043
HpyCH4V TGCA 9 cut(s) 455, 595, 707, 745, 797, 952, 1079, 1127, 1200
HpyF10VI GCNNNNNNNGC 4 cut(s) 45, 209, 1121, 1218
HpyF3I CTNAG 3 cut(s) 551, 696, 1273
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 4 cut(s) 628, 960, 1156, 1305
HspAI GCGC 1 cut(s) 1145
Kzo9I GATC 5 cut(s) 285, 341, 930, 1023, 1255
LguI GCTCTTC 2 cut(s) 427, 1101
LmnI GCTCC 4 cut(s) 28, 87, 200, 1162
Lsp1109I GCAGC 3 cut(s) 719, 936, 1111
LweI GCATC 5 cut(s) 589, 639, 1081, 1111, 1174
MaeI CTAG 3 cut(s) 653, 1062, 1136
MaeIII GTNAC 4 cut(s) 306, 358, 460, 781
MalI GATC 5 cut(s) 287, 343, 932, 1025, 1257
MboI GATC 5 cut(s) 285, 341, 930, 1023, 1255
MboII GAAGA 9 cut(s) 122, 183, 198, 232, 444, 895, 1061, 1088, 1160
MflI RGATCY 3 cut(s) 285, 341, 1255
MhlI GDGCHC 2 cut(s) 805, 916
MluCI AATT 4 cut(s) 10, 818, 926, 1065
MlyI GAGTC 2 cut(s) 800, 1299
MmeI TCCRAC 1 cut(s) 207
MseI TTAA 1 cut(s) 1068
MslI CAYNNNNRTG 1 cut(s) 1044
MspI CCGG 5 cut(s) 6, 289, 319, 333, 1214
MspR9I CCNGG 5 cut(s) 320, 346, 608, 1149, 1214
Mva1269I GAATGC 3 cut(s) 110, 457, 622
MvaI CCWGG 3 cut(s) 346, 608, 1149
MwoI GCNNNNNNNGC 4 cut(s) 45, 209, 1121, 1218
NciI CCSGG 2 cut(s) 320, 1214
NdeII GATC 5 cut(s) 285, 341, 930, 1023, 1255
NheI GCTAGC 1 cut(s) 652
NlaIII CATG 4 cut(s) 628, 960, 1156, 1305
NlaIV GGNNCC 5 cut(s) 202, 287, 293, 343, 730
NmuCI GTSAC 3 cut(s) 306, 460, 781
NspI RCATGY 1 cut(s) 960
PaeR7I CTCGAG 1 cut(s) 915
PagI TCATGA 1 cut(s) 624
PaqCI CACCTGC 1 cut(s) 788
PciSI GCTCTTC 2 cut(s) 427, 1101
PctI GAATGC 3 cut(s) 110, 457, 622
PfeI GAWTC 2 cut(s) 476, 880
PflMI CCANNNNNTGG 1 cut(s) 414
PfoI TCCNGGA 1 cut(s) 606
PkrI GCNGC 3 cut(s) 709, 951, 1126
PleI GAGTC 2 cut(s) 799, 1298
PpsI GAGTC 2 cut(s) 799, 1298
Psp6I CCWGG 3 cut(s) 344, 606, 1147
PspGI CCWGG 3 cut(s) 344, 606, 1147
PspN4I GGNNCC 5 cut(s) 202, 287, 293, 343, 730
PspPI GGNCC 1 cut(s) 348
PspXI VCTCGAGB 1 cut(s) 915
PstI CTGCAG 2 cut(s) 799, 1202
PstNI CAGNNNCTG 1 cut(s) 473
PsuI RGATCY 3 cut(s) 285, 341, 1255
RsaI GTAC 1 cut(s) 1102
RsaNI GTAC 1 cut(s) 1101
RseI CAYNNNNRTG 1 cut(s) 1044
SalI GTCGAC 1 cut(s) 490
SapI GCTCTTC 2 cut(s) 427, 1101
SaqAI TTAA 1 cut(s) 1068
SatI GCNGC 3 cut(s) 708, 950, 1125
Sau3AI GATC 5 cut(s) 285, 341, 930, 1023, 1255
Sau96I GGNCC 1 cut(s) 348
SchI GAGTC 2 cut(s) 800, 1299
ScrFI CCNGG 5 cut(s) 320, 346, 608, 1149, 1214
SduI GDGCHC 2 cut(s) 805, 916
SfaNI GCATC 5 cut(s) 589, 639, 1081, 1111, 1174
SfcI CTRYAG 3 cut(s) 93, 795, 1198
Sfr274I CTCGAG 1 cut(s) 915
SinI GGWCC 1 cut(s) 348
SlaI CTCGAG 1 cut(s) 915
SmiMI CAYNNNNRTG 1 cut(s) 1044
SmlI CTYRAG 3 cut(s) 260, 857, 915
SmoI CTYRAG 3 cut(s) 260, 857, 915
Sse9I AATT 4 cut(s) 10, 818, 926, 1065
SsiI CCGC 2 cut(s) 166, 427
SspMI CTAG 3 cut(s) 653, 1062, 1136
StyD4I CCNGG 5 cut(s) 318, 344, 606, 1147, 1212
StyI CCWWGG 1 cut(s) 510
TaaI ACNGT 4 cut(s) 364, 523, 899, 1043
TaqI TCGA 4 cut(s) 102, 491, 689, 916
TasI AATT 4 cut(s) 10, 818, 926, 1065
TfiI GAWTC 2 cut(s) 476, 880
Tru1I TTAA 1 cut(s) 1068
Tru9I TTAA 1 cut(s) 1068
TscAI CASTG 4 cut(s) 46, 369, 709, 1048
TseFI GTSAC 3 cut(s) 306, 460, 781
TseI GCWGC 3 cut(s) 707, 949, 1124
Tsp45I GTSAC 3 cut(s) 306, 460, 781
TspDTI ATGAA 2 cut(s) 893, 1062
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 4 cut(s) 46, 369, 709, 1048
Van91I CCANNNNNTGG 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 348
XceI RCATGY 1 cut(s) 960
XhoI CTCGAG 1 cut(s) 915
XmiI GTMKAC 2 cut(s) 96, 491
XspI CTAG 3 cut(s) 653, 1062, 1136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.