MD02G1263600.v1.1

Vacuolar protein sorting-associated protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
Physical Location & Seq
Reverse (-)
31773404 .. 31778546
5143 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1263600.v1.1.491

Sequence Viewer

Length: 1338 bp
ATGGCCGGAAATTGCCTGCAAGCGGTGGAGCTTACTACGAGCGGCCGCCCAGTCCTCCTCCCAACTGAGATCGAATGTTCCCTCCTCTCCGCCGTAGACCTCGAATGCGAAGACCTCCCCAACTTCCCTCACCTCAAATCGGGTCTCCTCATTCTCACCACCCACCGCCTCTTATGGCTTCCCGACTCCACCACCACAATACCCACCGCCTCTTCTTCAGCCTCCGCCATCCCTCTCGCCGCCGTCACCCACATCTTTGCCGCCAAAAAGTCAATCAAGTCGATGTTCCACTCGCCCCGGCTCAGATTCCAGCTCTCGGTTTCGCCGGAAGGCCGGGTTCCGGATTCCGGTTTGGGTTCGAGGTCGGTGGTTGTGACGGTGGTGGTGAGGGGGAAGGGCGATTTGGACGCGTTTTTGAGCAAATTTTGGGAGAGCTGGCGGGGTAGAGCCTGGGAGATTGGGGATGAGCAGGGCAGCTCCGATGCTGTTTCGGGTTCGGGTTCAGCGTCCAGTTCCGGGTTGTATACGAGGGAAGGGACGGTGAGGATGGTTGGAGTTTCGGGGATATTGAGGAAAGAGCAGGAGATGTGGGAGAGTACTGATAAGAGCTTGCAGGACGCTTTCCAGGACTTGAATGCTCTCATGTTTAGTAAGGCTAAAGAGATGGTGATGCTAGCAGAAAAAATGAGGCAGAAGCTTTTATCCGGCTCGCAGCCAAATGATGAGGAATTGGGTTCCAAACAAGAGATGCAAGATTGGATGCTCAGTGTTGGTATTATATCGCCCGTTACTAAGGAGTCTGCGGGTGCTCAGTATCACCAACAATTGTCCCGTCAGTTAGCAGATTTTGTCAGACTTCCACTTGAGAGAGCTGGAGGGATGATGAATCTTATAGACATCTACTGTCTCTTCAATCGTGCTCGAGGCACAGAACTGATATCGCCAGAGGATTTGCTGCAAGCATGTTCTCTCTGGGAGAAGTTTGACGTCCCAGTAATGCTTCGAAAGTTTGATAGTGGAGTCATGGTTATCCAGAATAAGTCCCACAGTGACGAAGAGGTTTTTGCTAGAATCAAGAACCTTGTAACAAAGCCTGATGCTCTTCGAAATGGGATAAGTGCTAGTGATGCTGCAATTACATTAGGTATTGCACCAGGCATGGCCAAGGAGCATCTTCTTACTGCTGAAAGCAAAGGTTTGCTGTGCAGAGATATAAGCCCTGATGGCTTTCGCTTTTATATCAACCTGTTTCCCGAAATCGATCCAAATGACTTGTACCTAGTGAAAGACTATGGAATCTATCACACATGGTTGAGGGCGGCGTCTGCTTCTGGATGA

Protein Analysis

446

Amino Acids

48.88

Weight (kDa)

5.62

Isoelectric Point (pI)

47.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vps36_ESCRT-II PF11605 10 - 105 2.1e-10 Vacuolar protein sorting protein 36 Vps36
EAP30 PF04157 184 - 404 1.3e-55 EAP30/Vps36 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 990
AccBSI CCGCTC 1 cut(s) 42
AccI GTMKAC 2 cut(s) 96, 524
AccII CGCG 1 cut(s) 410
AccIII TCCGGA 1 cut(s) 340
AclWI GGATC 1 cut(s) 1256
AcoI YGGCCR 3 cut(s) 3, 43, 1161
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 1 cut(s) 201
AcyI GRCGYC 2 cut(s) 987, 1322
AfaI GTAC 2 cut(s) 598, 1277
AfiI CCNNNNNNNGG 6 cut(s) 22, 139, 316, 340, 347, 516
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 2 cut(s) 634, 913
AjnI CCWGG 3 cut(s) 449, 624, 1153
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AluBI AGCT 7 cut(s) 31, 313, 435, 477, 609, 697, 872
AluI AGCT 7 cut(s) 31, 313, 435, 477, 609, 697, 872
Alw21I GWGCWC 2 cut(s) 811, 922
Alw26I GTCTC 2 cut(s) 149, 911
AlwI GGATC 1 cut(s) 1256
Ama87I CYCGRG 1 cut(s) 921
Aor13HI TCCGGA 1 cut(s) 340
AoxI GGCC 4 cut(s) 3, 43, 331, 1161
ApeKI GCWGC 4 cut(s) 474, 712, 955, 1130
ApoI RAATTY 1 cut(s) 422
AsuC2I CCSGG 3 cut(s) 298, 335, 517
AsuHPI GGTGA 7 cut(s) 122, 148, 238, 397, 553, 679, 809
AsuII TTCGAA 2 cut(s) 1003, 1105
AsuNHI GCTAGC 1 cut(s) 673
AvaI CYCGRG 1 cut(s) 921
BalI TGGCCA 1 cut(s) 1163
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 2 cut(s) 811, 922
BbvI GCAGC 4 cut(s) 486, 724, 942, 1117
BccI CCATC 4 cut(s) 236, 541, 658, 1217
BceAI ACGGC 2 cut(s) 77, 227
BciT130I CCWGG 3 cut(s) 451, 626, 1155
BcnI CCSGG 3 cut(s) 298, 335, 517
BcoDI GTCTC 2 cut(s) 149, 911
BfaI CTAG 4 cut(s) 674, 1068, 1122, 1280
BglI GCCNNNNNGGC 1 cut(s) 1224
BisI GCNGC 9 cut(s) 43, 46, 240, 261, 475, 713, 956, 1131, 1320
BlsI GCNGC 9 cut(s) 44, 47, 241, 262, 476, 714, 957, 1132, 1321
BmcAI AGTACT 1 cut(s) 598
Bme1390I CCNGG 6 cut(s) 298, 335, 451, 517, 626, 1155
BmeT110I CYCGRG 1 cut(s) 921
BmiI GGNNCC 2 cut(s) 339, 736
BmrFI CCNGG 6 cut(s) 298, 335, 451, 517, 626, 1155
BmrI ACTGGG 2 cut(s) 44, 986
BmsI GCATC 7 cut(s) 472, 660, 738, 750, 1087, 1117, 1180
BmtI GCTAGC 1 cut(s) 677
BmuI ACTGGG 2 cut(s) 44, 986
BpiI GAAGAC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 894
Bpu14I TTCGAA 2 cut(s) 1003, 1105
BpuEI CTTGAG 1 cut(s) 884
BpuMI CCSGG 3 cut(s) 298, 335, 517
Bsa29I ATCGAT 1 cut(s) 1260
BsaHI GRCGYC 2 cut(s) 987, 1322
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 3 cut(s) 296, 450, 1164
BsaWI WCCGGW 2 cut(s) 340, 347
BsaXI ACNNNNNCTCC 2 cut(s) 1011, 1041
Bsc4I CCNNNNNNNGG 6 cut(s) 22, 139, 316, 340, 347, 516
Bse1I ACTGG 3 cut(s) 50, 510, 992
BseAI TCCGGA 1 cut(s) 340
BseBI CCWGG 3 cut(s) 451, 626, 1155
BseCI ATCGAT 1 cut(s) 1260
BseDI CCNNGG 3 cut(s) 296, 450, 1164
BseGI GGATG 5 cut(s) 228, 469, 552, 765, 885
BseLI CCNNNNNNNGG 6 cut(s) 22, 139, 316, 340, 347, 516
BseMII CTCAG 4 cut(s) 57, 316, 778, 824
BseNI ACTGG 3 cut(s) 50, 510, 992
BseRI GAGGAG 3 cut(s) 47, 74, 137
BseX3I CGGCCG 1 cut(s) 43
BseXI GCAGC 4 cut(s) 486, 724, 942, 1117
BsgI GTGCAG 1 cut(s) 1225
Bsh1236I CGCG 1 cut(s) 410
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 4 cut(s) 5, 45, 333, 1163
BshVI ATCGAT 1 cut(s) 1260
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 811, 922
BsiHKCI CYCGRG 1 cut(s) 921
BsiSI CCGG 8 cut(s) 6, 298, 326, 334, 341, 348, 516, 705
BslFI GGGAC 4 cut(s) 550, 814, 974, 1027
BslI CCNNNNNNNGG 6 cut(s) 22, 139, 316, 340, 347, 516
BsmAI GTCTC 2 cut(s) 149, 911
BsmFI GGGAC 4 cut(s) 550, 814, 974, 1027
BsmI GAATGC 2 cut(s) 110, 640
BsnI GGCC 4 cut(s) 5, 45, 333, 1163
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 921
Bsp119I TTCGAA 2 cut(s) 1003, 1105
Bsp1286I GDGCHC 2 cut(s) 811, 922
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 2 cut(s) 69, 1261
BspANI GGCC 4 cut(s) 5, 45, 333, 1163
BspCNI CTCAG 4 cut(s) 58, 315, 777, 823
BspDI ATCGAT 1 cut(s) 1260
BspEI TCCGGA 1 cut(s) 340
BspFNI CGCG 1 cut(s) 410
BspLI GGNNCC 2 cut(s) 339, 736
BspOI GCTAGC 1 cut(s) 677
BspPI GGATC 1 cut(s) 1256
BspQI GCTCTTC 1 cut(s) 1107
BspT104I TTCGAA 2 cut(s) 1003, 1105
BspTNI GGTCTC 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 42
BsrI ACTGG 3 cut(s) 50, 510, 992
BssECI CCNNGG 3 cut(s) 296, 450, 1164
BssMI GATC 2 cut(s) 69, 1261
BssNAI GTATAC 1 cut(s) 525
BssNI GRCGYC 2 cut(s) 987, 1322
BssT1I CCWWGG 1 cut(s) 1164
Bst1107I GTATAC 1 cut(s) 525
Bst2UI CCWGG 3 cut(s) 451, 626, 1155
Bst4CI ACNGT 4 cut(s) 379, 541, 905, 1049
Bst6I CTCTTC 4 cut(s) 217, 914, 1050, 1107
BstACI GRCGYC 2 cut(s) 987, 1322
BstBI TTCGAA 2 cut(s) 1003, 1105
BstC8I GCNNGC 7 cut(s) 17, 21, 437, 611, 675, 710, 960
BstDEI CTNAG 5 cut(s) 66, 302, 764, 792, 810
BstF5I GGATG 5 cut(s) 228, 469, 552, 765, 885
BstFNI CGCG 1 cut(s) 410
BstKTI GATC 2 cut(s) 72, 1264
BstMAI GTCTC 2 cut(s) 149, 911
BstMBI GATC 2 cut(s) 69, 1261
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 3 cut(s) 1127, 1224, 1325
BstNI CCWGG 3 cut(s) 451, 626, 1155
BstNSI RCATGY 1 cut(s) 966
BstSCI CCNGG 6 cut(s) 296, 333, 449, 515, 624, 1153
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 4 cut(s) 486, 724, 942, 1117
BstV2I GAAGAC 1 cut(s) 117
BstZ17I GTATAC 1 cut(s) 525
BstZI CGGCCG 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 1260
BsuRI GGCC 4 cut(s) 5, 45, 333, 1163
BsuTUI ATCGAT 1 cut(s) 1260
BtsCI GGATG 5 cut(s) 228, 469, 552, 765, 885
BtsIMutI CAGTG 2 cut(s) 772, 1054
Cac8I GCNNGC 7 cut(s) 17, 21, 437, 611, 675, 710, 960
CciNI GCGGCCGC 1 cut(s) 43
ClaI ATCGAT 1 cut(s) 1260
CseI GACGC 4 cut(s) 416, 495, 626, 1311
Csp6I GTAC 2 cut(s) 597, 1276
CviAII CATG 5 cut(s) 643, 963, 1024, 1159, 1308
CviQI GTAC 2 cut(s) 597, 1276
DdeI CTNAG 5 cut(s) 66, 302, 764, 792, 810
DpnI GATC 2 cut(s) 71, 1263
DpnII GATC 2 cut(s) 69, 1261
EaeI YGGCCR 3 cut(s) 3, 43, 1161
EagI CGGCCG 1 cut(s) 43
Eam1104I CTCTTC 4 cut(s) 217, 914, 1050, 1107
EarI CTCTTC 4 cut(s) 217, 914, 1050, 1107
EciI GGCGGA 2 cut(s) 79, 214
EclXI CGGCCG 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 1164
Eco31I GGTCTC 1 cut(s) 149
Eco32I GATATC 1 cut(s) 939
Eco52I CGGCCG 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 201
Eco88I CYCGRG 1 cut(s) 921
EcoRII CCWGG 3 cut(s) 449, 624, 1153
EcoRV GATATC 1 cut(s) 939
EcoT14I CCWWGG 1 cut(s) 1164
ErhI CCWWGG 1 cut(s) 1164
FaeI CATG 5 cut(s) 646, 966, 1027, 1162, 1311
FaqI GGGAC 4 cut(s) 550, 814, 974, 1027
FatI CATG 5 cut(s) 642, 962, 1023, 1158, 1307
FauI CCCGC 2 cut(s) 432, 796
FblI GTMKAC 2 cut(s) 96, 524
Fnu4HI GCNGC 9 cut(s) 43, 46, 240, 261, 475, 713, 956, 1131, 1320
FokI GGATG 5 cut(s) 215, 476, 559, 772, 892
Fsp4HI GCNGC 9 cut(s) 43, 46, 240, 261, 475, 713, 956, 1131, 1320
FspBI CTAG 4 cut(s) 674, 1068, 1122, 1280
GluI GCNGC 9 cut(s) 43, 46, 240, 261, 475, 713, 956, 1131, 1320
GsuI CTGGAG 1 cut(s) 894
HaeIII GGCC 4 cut(s) 5, 45, 333, 1163
HapII CCGG 8 cut(s) 6, 298, 326, 334, 341, 348, 516, 705
HgaI GACGC 4 cut(s) 416, 495, 626, 1311
Hin1I GRCGYC 2 cut(s) 987, 1322
Hin1II CATG 5 cut(s) 646, 966, 1027, 1162, 1311
HindIII AAGCTT 1 cut(s) 695
HinfI GANTC 8 cut(s) 185, 306, 344, 797, 886, 1020, 1071, 1296
HpaII CCGG 8 cut(s) 6, 298, 326, 334, 341, 348, 516, 705
HphI GGTGA 7 cut(s) 122, 148, 238, 397, 553, 679, 809
Hpy166II GTNNAC 2 cut(s) 97, 525
Hpy188I TCNGA 3 cut(s) 305, 481, 854
Hpy188III TCNNGA 6 cut(s) 182, 341, 1033, 1075, 1253, 1332
Hpy8I GTNNAC 2 cut(s) 97, 525
HpyAV CCTTC 3 cut(s) 323, 388, 527
HpyCH4III ACNGT 4 cut(s) 379, 541, 905, 1049
HpyCH4IV ACGT 1 cut(s) 987
HpyCH4V TGCA 7 cut(s) 19, 613, 751, 958, 1133, 1151, 1206
HpyF10VI GCNNNNNNNGC 3 cut(s) 1127, 1224, 1325
HpyF3I CTNAG 5 cut(s) 66, 302, 764, 792, 810
HpySE526I ACGT 1 cut(s) 987
Hsp92I GRCGYC 2 cut(s) 987, 1322
Hsp92II CATG 5 cut(s) 646, 966, 1027, 1162, 1311
Kpn2I TCCGGA 1 cut(s) 340
Kzo9I GATC 2 cut(s) 69, 1261
LguI GCTCTTC 1 cut(s) 1107
LmnI GCTCC 3 cut(s) 28, 482, 1168
Lsp1109I GCAGC 4 cut(s) 486, 724, 942, 1117
LweI GCATC 7 cut(s) 472, 660, 738, 750, 1087, 1117, 1180
MaeI CTAG 4 cut(s) 674, 1068, 1122, 1280
MaeII ACGT 1 cut(s) 987
MaeIII GTNAC 5 cut(s) 244, 373, 787, 1049, 1084
MalI GATC 2 cut(s) 71, 1263
MbiI CCGCTC 1 cut(s) 42
MboI GATC 2 cut(s) 69, 1261
MboII GAAGA 7 cut(s) 122, 204, 207, 901, 1067, 1094, 1166
MfeI CAATTG 1 cut(s) 824
MhlI GDGCHC 2 cut(s) 811, 922
MlsI TGGCCA 1 cut(s) 1163
MluCI AATT 5 cut(s) 10, 422, 728, 824, 1134
MluI ACGCGT 1 cut(s) 408
MluNI TGGCCA 1 cut(s) 1163
MlyI GAGTC 3 cut(s) 179, 806, 1029
MmeI TCCRAC 1 cut(s) 532
Mox20I TGGCCA 1 cut(s) 1163
MroI TCCGGA 1 cut(s) 340
MscI TGGCCA 1 cut(s) 1163
Msp20I TGGCCA 1 cut(s) 1163
MspI CCGG 8 cut(s) 6, 298, 326, 334, 341, 348, 516, 705
MspR9I CCNGG 6 cut(s) 298, 335, 451, 517, 626, 1155
MunI CAATTG 1 cut(s) 824
Mva1269I GAATGC 2 cut(s) 110, 640
MvaI CCWGG 3 cut(s) 451, 626, 1155
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 3 cut(s) 1127, 1224, 1325
NciI CCSGG 3 cut(s) 298, 335, 517
NdeII GATC 2 cut(s) 69, 1261
NheI GCTAGC 1 cut(s) 673
NlaIII CATG 5 cut(s) 646, 966, 1027, 1162, 1311
NlaIV GGNNCC 2 cut(s) 339, 736
NmuCI GTSAC 3 cut(s) 244, 373, 1049
NotI GCGGCCGC 1 cut(s) 43
NspI RCATGY 1 cut(s) 966
NspV TTCGAA 2 cut(s) 1003, 1105
PaeR7I CTCGAG 1 cut(s) 921
PciSI GCTCTTC 1 cut(s) 1107
PcsI WCGNNNNNNNCGW 1 cut(s) 503
PctI GAATGC 2 cut(s) 110, 640
PfeI GAWTC 5 cut(s) 306, 344, 886, 1071, 1296
PfoI TCCNGGA 1 cut(s) 624
PkrI GCNGC 9 cut(s) 44, 47, 241, 262, 476, 714, 957, 1132, 1321
PleI GAGTC 3 cut(s) 179, 805, 1028
PpsI GAGTC 3 cut(s) 179, 805, 1028
Psp6I CCWGG 3 cut(s) 449, 624, 1153
PspGI CCWGG 3 cut(s) 449, 624, 1153
PspN4I GGNNCC 2 cut(s) 339, 736
PspXI VCTCGAGB 1 cut(s) 921
RsaI GTAC 2 cut(s) 598, 1277
RsaNI GTAC 2 cut(s) 597, 1276
SapI GCTCTTC 1 cut(s) 1107
SatI GCNGC 9 cut(s) 43, 46, 240, 261, 475, 713, 956, 1131, 1320
Sau3AI GATC 2 cut(s) 69, 1261
ScaI AGTACT 1 cut(s) 598
SchI GAGTC 3 cut(s) 179, 806, 1029
ScrFI CCNGG 6 cut(s) 298, 335, 451, 517, 626, 1155
SduI GDGCHC 2 cut(s) 811, 922
SfaNI GCATC 7 cut(s) 472, 660, 738, 750, 1087, 1117, 1180
Sfr274I CTCGAG 1 cut(s) 921
SfuI TTCGAA 2 cut(s) 1003, 1105
SlaI CTCGAG 1 cut(s) 921
SmlI CTYRAG 2 cut(s) 863, 921
SmoI CTYRAG 2 cut(s) 863, 921
Sse9I AATT 5 cut(s) 10, 422, 728, 824, 1134
SspMI CTAG 4 cut(s) 674, 1068, 1122, 1280
StyD4I CCNGG 6 cut(s) 296, 333, 449, 515, 624, 1153
StyI CCWWGG 1 cut(s) 1164
TaaI ACNGT 4 cut(s) 379, 541, 905, 1049
TaiI ACGT 1 cut(s) 990
TaqI TCGA 8 cut(s) 72, 102, 281, 359, 922, 1003, 1105, 1260
TasI AATT 5 cut(s) 10, 422, 728, 824, 1134
TatI WGTACW 1 cut(s) 596
TauI GCSGC 5 cut(s) 45, 48, 242, 263, 1322
TfiI GAWTC 5 cut(s) 306, 344, 886, 1071, 1296
TscAI CASTG 2 cut(s) 772, 1054
TseFI GTSAC 3 cut(s) 244, 373, 1049
TseI GCWGC 4 cut(s) 474, 712, 955, 1130
Tsp45I GTSAC 3 cut(s) 244, 373, 1049
TspDTI ATGAA 1 cut(s) 899
TspRI CASTG 2 cut(s) 772, 1054
XapI RAATTY 1 cut(s) 422
XceI RCATGY 1 cut(s) 966
XhoI CTCGAG 1 cut(s) 921
XmiI GTMKAC 2 cut(s) 96, 524
XspI CTAG 4 cut(s) 674, 1068, 1122, 1280
ZraI GACGTC 1 cut(s) 988
ZrmI AGTACT 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.