pycom02g22580

Vacuolar protein sorting-associated protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Reverse (-)
20703956 .. 20707790
3835 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g22580.6

Sequence Viewer

Length: 1341 bp
ATGGCCGGAAACTGCCTGCAAGCGGTGGAGCTTACTACGAGCGGCCGCCCAGTCCTCCTCCCAACTGAGATCGAATGTTCCCTCCTCTCCGCCGTAGACCTCGAATGCGAAGACCTCCCCAACTTCCCTCACCTCAAATCGGGTCTCCTCATTCTCACCACCCACCGCCTGTTATGGCTTCCCGACTCTACCACCACAATACCCACCGCCTCTTCTTCAGCCTCCGCCATCCCTCTCGCCGCCATCACCCACATCTTTGCCGCCAAAAAGTCAATCAAGTCCATGTTCCACTCGCCCCGACTCAGATTCCAGCTCTCGGTTTCGCCCGAAGGCCGGGTTCCGGATTCCGGTTCGGGTTCGAGGTCGGTGGTTGTGACGGTGGTGGTGAGGGGGAAGAGCGATTTGGACGCGTTTTTGAGCAAATTTTGGGAGAGCTGGCGGGGTAGAGCCTGGGAGATTGGGGATGAGCAGGGCAGCTCCGAAGCGGTTTCGGGTTCGGGTTCGGGTTCGGCGTCCAGTTCCGGGTTTTATACGAGGGAAGGGACGGTGAGGATGGTTGGAGTTTCGGGGATATTGAGGAAAGAACAGGAGATGTGGGAGAGTACTGATAAGAGCTTGCAGGACGCTTTCCAGGACTTGAATGCTCTCATGAGTAAGGCTAAAGAGATGGTGATGCTAGCAGAAAAAATGAGGCAGAAGCTTTTATCCGGCTCGCAGCCAAATGATGAGGAATTGGGTTCCAAACAAGAGATGCAAGATTGGATGCTCAGTGTTGGTATTATATCGCCCGTTACTAAGGAGTCTGCGGGTGCTCAGTATCACCAACAATTGTCCCGTCAGTTAGCAGATTTTGTCAGACTTCCACTTGAGAGGGCTGGAGGAATGATGAATCTTATAGACATCTACTGTCTCTTCAATCGTGCTCGAGGCACAGAACTGATCTCGCCTGAGGATTTGTTGCAAGCATGTTCTCTCTGGGAGAAGTTTGACGTCCCAGTAATGCTTCGAAAGTTTGATAGTGGAGTCATGGTCATCCAGAATAAGTCCCACAGTGACGAAGAGGTTTTTGCTAGAATCAAGACCCTTGTAATGAAGCCTGATGCTCTTCGAACTGGGATAAGTGCTAGTGATGCTGCAATTACATTAGGTATTGCACCAGGCATGGCCAAGGAGCATCTTCTTACTGCTGAAAGCAAAGGTTTGCTGTGCAGAGATATAAGCCCTGATGGGTTTCGCTTTTATATCAACCTGCTTCCTGAAATCGATCCAAATGACTTGTACCTAGTGAAAGACTATGGAATCTATCACACATGGTTGAGGGCGGCATCTGCTTCTGGATGA

Protein Analysis

447

Amino Acids

48.91

Weight (kDa)

5.62

Isoelectric Point (pI)

49.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 993
Acc36I ACCTGC 1 cut(s) 1257
AccBSI CCGCTC 1 cut(s) 42
AccI GTMKAC 1 cut(s) 96
AccII CGCG 1 cut(s) 410
AccIII TCCGGA 1 cut(s) 340
AclWI GGATC 1 cut(s) 1259
AcoI YGGCCR 3 cut(s) 3, 43, 1164
AcsI RAATTY 1 cut(s) 422
AcuI CTGAAG 1 cut(s) 201
AcyI GRCGYC 2 cut(s) 512, 990
AfaI GTAC 2 cut(s) 604, 1280
AfiI CCNNNNNNNGG 7 cut(s) 22, 139, 316, 333, 340, 347, 522
AflIII ACRYGT 1 cut(s) 408
AgsI TTSAA 2 cut(s) 640, 916
AjnI CCWGG 3 cut(s) 449, 630, 1156
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AluBI AGCT 6 cut(s) 31, 313, 435, 477, 615, 700
AluI AGCT 6 cut(s) 31, 313, 435, 477, 615, 700
Alw21I GWGCWC 2 cut(s) 814, 925
Alw26I GTCTC 2 cut(s) 149, 914
AlwI GGATC 1 cut(s) 1259
Ama87I CYCGRG 1 cut(s) 924
Aor13HI TCCGGA 1 cut(s) 340
AoxI GGCC 4 cut(s) 3, 43, 331, 1164
ApeKI GCWGC 3 cut(s) 474, 715, 1133
ApoI RAATTY 1 cut(s) 422
AsuC2I CCSGG 2 cut(s) 335, 523
AsuHPI GGTGA 7 cut(s) 122, 148, 238, 397, 559, 682, 812
AsuII TTCGAA 2 cut(s) 1006, 1108
AsuNHI GCTAGC 1 cut(s) 676
AvaI CYCGRG 1 cut(s) 924
AxyI CCTNAGG 1 cut(s) 948
BalI TGGCCA 1 cut(s) 1166
BbsI GAAGAC 1 cut(s) 117
Bbv12I GWGCWC 2 cut(s) 814, 925
BbvI GCAGC 3 cut(s) 486, 727, 1120
BccI CCATC 5 cut(s) 236, 251, 547, 661, 1220
BceAI ACGGC 1 cut(s) 77
BciT130I CCWGG 3 cut(s) 451, 632, 1158
BcnI CCSGG 2 cut(s) 335, 523
BcoDI GTCTC 2 cut(s) 149, 914
BfaI CTAG 4 cut(s) 677, 1071, 1125, 1283
BfuAI ACCTGC 1 cut(s) 1257
BisI GCNGC 8 cut(s) 43, 46, 240, 261, 475, 716, 1134, 1323
BlsI GCNGC 8 cut(s) 44, 47, 241, 262, 476, 717, 1135, 1324
BmcAI AGTACT 1 cut(s) 604
Bme1390I CCNGG 5 cut(s) 335, 451, 523, 632, 1158
BmeT110I CYCGRG 1 cut(s) 924
BmiI GGNNCC 2 cut(s) 339, 739
BmrFI CCNGG 5 cut(s) 335, 451, 523, 632, 1158
BmrI ACTGGG 3 cut(s) 44, 989, 1122
BmsI GCATC 7 cut(s) 663, 741, 753, 1090, 1120, 1183, 1334
BmtI GCTAGC 1 cut(s) 680
BmuI ACTGGG 3 cut(s) 44, 989, 1122
BpiI GAAGAC 1 cut(s) 117
BpmI CTGGAG 1 cut(s) 897
Bpu14I TTCGAA 2 cut(s) 1006, 1108
BpuEI CTTGAG 1 cut(s) 887
BpuMI CCSGG 2 cut(s) 335, 523
Bsa29I ATCGAT 1 cut(s) 1263
BsaHI GRCGYC 2 cut(s) 512, 990
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 2 cut(s) 450, 1167
BsaWI WCCGGW 2 cut(s) 340, 347
BsaXI ACNNNNNCTCC 2 cut(s) 1014, 1044
Bsc4I CCNNNNNNNGG 7 cut(s) 22, 139, 316, 333, 340, 347, 522
Bse1I ACTGG 4 cut(s) 50, 516, 995, 1117
Bse21I CCTNAGG 1 cut(s) 948
BseAI TCCGGA 1 cut(s) 340
BseBI CCWGG 3 cut(s) 451, 632, 1158
BseCI ATCGAT 1 cut(s) 1263
BseDI CCNNGG 2 cut(s) 450, 1167
BseGI GGATG 5 cut(s) 228, 469, 558, 768, 1032
BseLI CCNNNNNNNGG 7 cut(s) 22, 139, 316, 333, 340, 347, 522
BseMII CTCAG 5 cut(s) 57, 316, 781, 827, 939
BseNI ACTGG 4 cut(s) 50, 516, 995, 1117
BseRI GAGGAG 3 cut(s) 47, 74, 137
BseX3I CGGCCG 1 cut(s) 43
BseXI GCAGC 3 cut(s) 486, 727, 1120
BsgI GTGCAG 1 cut(s) 1228
Bsh1236I CGCG 1 cut(s) 410
Bsh1285I CGRYCG 1 cut(s) 46
BshFI GGCC 4 cut(s) 5, 45, 333, 1166
BshVI ATCGAT 1 cut(s) 1263
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 2 cut(s) 814, 925
BsiHKCI CYCGRG 1 cut(s) 924
BsiSI CCGG 6 cut(s) 6, 334, 341, 348, 522, 708
BslFI GGGAC 4 cut(s) 556, 817, 977, 1030
BslI CCNNNNNNNGG 7 cut(s) 22, 139, 316, 333, 340, 347, 522
BsmAI GTCTC 2 cut(s) 149, 914
BsmFI GGGAC 4 cut(s) 556, 817, 977, 1030
BsmI GAATGC 2 cut(s) 110, 646
BsnI GGCC 4 cut(s) 5, 45, 333, 1166
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 924
Bsp119I TTCGAA 2 cut(s) 1006, 1108
Bsp1286I GDGCHC 2 cut(s) 814, 925
Bsp13I TCCGGA 1 cut(s) 340
Bsp143I GATC 3 cut(s) 69, 939, 1264
BspANI GGCC 4 cut(s) 5, 45, 333, 1166
BspCNI CTCAG 5 cut(s) 58, 315, 780, 826, 940
BspDI ATCGAT 1 cut(s) 1263
BspEI TCCGGA 1 cut(s) 340
BspFNI CGCG 1 cut(s) 410
BspHI TCATGA 1 cut(s) 648
BspLI GGNNCC 2 cut(s) 339, 739
BspMI ACCTGC 1 cut(s) 1257
BspOI GCTAGC 1 cut(s) 680
BspPI GGATC 1 cut(s) 1259
BspQI GCTCTTC 2 cut(s) 389, 1110
BspT104I TTCGAA 2 cut(s) 1006, 1108
BspTNI GGTCTC 1 cut(s) 149
BsrBI CCGCTC 1 cut(s) 42
BsrI ACTGG 4 cut(s) 50, 516, 995, 1117
BssECI CCNNGG 2 cut(s) 450, 1167
BssMI GATC 3 cut(s) 69, 939, 1264
BssNI GRCGYC 2 cut(s) 512, 990
BssT1I CCWWGG 1 cut(s) 1167
Bst2UI CCWGG 3 cut(s) 451, 632, 1158
Bst4CI ACNGT 4 cut(s) 379, 547, 908, 1052
Bst6I CTCTTC 5 cut(s) 217, 389, 917, 1053, 1110
BstACI GRCGYC 2 cut(s) 512, 990
BstBI TTCGAA 2 cut(s) 1006, 1108
BstC8I GCNNGC 7 cut(s) 17, 21, 437, 617, 678, 713, 963
BstDEI CTNAG 6 cut(s) 66, 302, 767, 795, 813, 948
BstF5I GGATG 5 cut(s) 228, 469, 558, 768, 1032
BstFNI CGCG 1 cut(s) 410
BstKTI GATC 3 cut(s) 72, 942, 1267
BstMAI GTCTC 2 cut(s) 149, 914
BstMBI GATC 3 cut(s) 69, 939, 1264
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 2 cut(s) 1130, 1328
BstNI CCWGG 3 cut(s) 451, 632, 1158
BstNSI RCATGY 1 cut(s) 969
BstSCI CCNGG 5 cut(s) 333, 449, 521, 630, 1156
BstUI CGCG 1 cut(s) 410
BstV1I GCAGC 3 cut(s) 486, 727, 1120
BstV2I GAAGAC 1 cut(s) 117
BstZI CGGCCG 1 cut(s) 43
Bsu15I ATCGAT 1 cut(s) 1263
Bsu36I CCTNAGG 1 cut(s) 948
BsuRI GGCC 4 cut(s) 5, 45, 333, 1166
BsuTUI ATCGAT 1 cut(s) 1263
BtsCI GGATG 5 cut(s) 228, 469, 558, 768, 1032
BtsIMutI CAGTG 2 cut(s) 775, 1057
BveI ACCTGC 1 cut(s) 1257
Cac8I GCNNGC 7 cut(s) 17, 21, 437, 617, 678, 713, 963
CciI TCATGA 1 cut(s) 648
CciNI GCGGCCGC 1 cut(s) 43
ClaI ATCGAT 1 cut(s) 1263
CseI GACGC 3 cut(s) 416, 501, 632
Csp6I GTAC 2 cut(s) 603, 1279
CviAII CATG 6 cut(s) 283, 649, 966, 1027, 1162, 1311
CviQI GTAC 2 cut(s) 603, 1279
DdeI CTNAG 6 cut(s) 66, 302, 767, 795, 813, 948
DpnI GATC 3 cut(s) 71, 941, 1266
DpnII GATC 3 cut(s) 69, 939, 1264
EaeI YGGCCR 3 cut(s) 3, 43, 1164
EagI CGGCCG 1 cut(s) 43
Eam1104I CTCTTC 5 cut(s) 217, 389, 917, 1053, 1110
EarI CTCTTC 5 cut(s) 217, 389, 917, 1053, 1110
EciI GGCGGA 2 cut(s) 79, 214
EclXI CGGCCG 1 cut(s) 43
Eco130I CCWWGG 1 cut(s) 1167
Eco31I GGTCTC 1 cut(s) 149
Eco52I CGGCCG 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 201
Eco81I CCTNAGG 1 cut(s) 948
Eco88I CYCGRG 1 cut(s) 924
EcoRII CCWGG 3 cut(s) 449, 630, 1156
EcoT14I CCWWGG 1 cut(s) 1167
ErhI CCWWGG 1 cut(s) 1167
FaeI CATG 6 cut(s) 286, 652, 969, 1030, 1165, 1314
FaqI GGGAC 4 cut(s) 556, 817, 977, 1030
FatI CATG 6 cut(s) 282, 648, 965, 1026, 1161, 1310
FauI CCCGC 2 cut(s) 432, 799
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 8 cut(s) 43, 46, 240, 261, 475, 716, 1134, 1323
FokI GGATG 5 cut(s) 215, 476, 565, 775, 1019
Fsp4HI GCNGC 8 cut(s) 43, 46, 240, 261, 475, 716, 1134, 1323
FspBI CTAG 4 cut(s) 677, 1071, 1125, 1283
GluI GCNGC 8 cut(s) 43, 46, 240, 261, 475, 716, 1134, 1323
GsuI CTGGAG 1 cut(s) 897
HaeIII GGCC 4 cut(s) 5, 45, 333, 1166
HapII CCGG 6 cut(s) 6, 334, 341, 348, 522, 708
HgaI GACGC 3 cut(s) 416, 501, 632
Hin1I GRCGYC 2 cut(s) 512, 990
Hin1II CATG 6 cut(s) 286, 652, 969, 1030, 1165, 1314
HindIII AAGCTT 1 cut(s) 698
HinfI GANTC 9 cut(s) 185, 300, 306, 344, 800, 889, 1023, 1074, 1299
HpaII CCGG 6 cut(s) 6, 334, 341, 348, 522, 708
HphI GGTGA 7 cut(s) 122, 148, 238, 397, 559, 682, 812
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 3 cut(s) 305, 481, 857
Hpy188III TCNNGA 7 cut(s) 182, 341, 649, 1036, 1078, 1256, 1335
Hpy8I GTNNAC 1 cut(s) 97
HpyAV CCTTC 2 cut(s) 323, 533
HpyCH4III ACNGT 4 cut(s) 379, 547, 908, 1052
HpyCH4IV ACGT 1 cut(s) 990
HpyCH4V TGCA 7 cut(s) 19, 619, 754, 961, 1136, 1154, 1209
HpyF10VI GCNNNNNNNGC 2 cut(s) 1130, 1328
HpyF3I CTNAG 6 cut(s) 66, 302, 767, 795, 813, 948
HpySE526I ACGT 1 cut(s) 990
Hsp92I GRCGYC 2 cut(s) 512, 990
Hsp92II CATG 6 cut(s) 286, 652, 969, 1030, 1165, 1314
Kpn2I TCCGGA 1 cut(s) 340
Kzo9I GATC 3 cut(s) 69, 939, 1264
LguI GCTCTTC 2 cut(s) 389, 1110
LmnI GCTCC 3 cut(s) 28, 482, 1171
Lsp1109I GCAGC 3 cut(s) 486, 727, 1120
LweI GCATC 7 cut(s) 663, 741, 753, 1090, 1120, 1183, 1334
MaeI CTAG 4 cut(s) 677, 1071, 1125, 1283
MaeII ACGT 1 cut(s) 990
MaeIII GTNAC 3 cut(s) 373, 790, 1052
MalI GATC 3 cut(s) 71, 941, 1266
MbiI CCGCTC 1 cut(s) 42
MboI GATC 3 cut(s) 69, 939, 1264
MboII GAAGA 8 cut(s) 122, 204, 207, 406, 904, 1070, 1097, 1169
MfeI CAATTG 1 cut(s) 827
MhlI GDGCHC 2 cut(s) 814, 925
MlsI TGGCCA 1 cut(s) 1166
MluCI AATT 4 cut(s) 422, 731, 827, 1137
MluI ACGCGT 1 cut(s) 408
MluNI TGGCCA 1 cut(s) 1166
MlyI GAGTC 4 cut(s) 179, 294, 809, 1032
MmeI TCCRAC 1 cut(s) 538
Mox20I TGGCCA 1 cut(s) 1166
MroI TCCGGA 1 cut(s) 340
MscI TGGCCA 1 cut(s) 1166
Msp20I TGGCCA 1 cut(s) 1166
MspI CCGG 6 cut(s) 6, 334, 341, 348, 522, 708
MspR9I CCNGG 5 cut(s) 335, 451, 523, 632, 1158
MunI CAATTG 1 cut(s) 827
Mva1269I GAATGC 2 cut(s) 110, 646
MvaI CCWGG 3 cut(s) 451, 632, 1158
MvnI CGCG 1 cut(s) 410
MwoI GCNNNNNNNGC 2 cut(s) 1130, 1328
NciI CCSGG 2 cut(s) 335, 523
NdeII GATC 3 cut(s) 69, 939, 1264
NheI GCTAGC 1 cut(s) 676
NlaIII CATG 6 cut(s) 286, 652, 969, 1030, 1165, 1314
NlaIV GGNNCC 2 cut(s) 339, 739
NmuCI GTSAC 2 cut(s) 373, 1052
NotI GCGGCCGC 1 cut(s) 43
NspI RCATGY 1 cut(s) 969
NspV TTCGAA 2 cut(s) 1006, 1108
PaeR7I CTCGAG 1 cut(s) 924
PagI TCATGA 1 cut(s) 648
PciSI GCTCTTC 2 cut(s) 389, 1110
PcsI WCGNNNNNNNCGW 1 cut(s) 509
PctI GAATGC 2 cut(s) 110, 646
PfeI GAWTC 5 cut(s) 306, 344, 889, 1074, 1299
PfoI TCCNGGA 1 cut(s) 630
PkrI GCNGC 8 cut(s) 44, 47, 241, 262, 476, 717, 1135, 1324
PleI GAGTC 4 cut(s) 179, 294, 808, 1031
PpsI GAGTC 4 cut(s) 179, 294, 808, 1031
Psp6I CCWGG 3 cut(s) 449, 630, 1156
PspGI CCWGG 3 cut(s) 449, 630, 1156
PspN4I GGNNCC 2 cut(s) 339, 739
PspXI VCTCGAGB 1 cut(s) 924
RsaI GTAC 2 cut(s) 604, 1280
RsaNI GTAC 2 cut(s) 603, 1279
SapI GCTCTTC 2 cut(s) 389, 1110
SatI GCNGC 8 cut(s) 43, 46, 240, 261, 475, 716, 1134, 1323
Sau3AI GATC 3 cut(s) 69, 939, 1264
ScaI AGTACT 1 cut(s) 604
SchI GAGTC 4 cut(s) 179, 294, 809, 1032
ScrFI CCNGG 5 cut(s) 335, 451, 523, 632, 1158
SduI GDGCHC 2 cut(s) 814, 925
SfaNI GCATC 7 cut(s) 663, 741, 753, 1090, 1120, 1183, 1334
Sfr274I CTCGAG 1 cut(s) 924
SfuI TTCGAA 2 cut(s) 1006, 1108
SlaI CTCGAG 1 cut(s) 924
SmlI CTYRAG 2 cut(s) 866, 924
SmoI CTYRAG 2 cut(s) 866, 924
Sse9I AATT 4 cut(s) 422, 731, 827, 1137
SspMI CTAG 4 cut(s) 677, 1071, 1125, 1283
StyD4I CCNGG 5 cut(s) 333, 449, 521, 630, 1156
StyI CCWWGG 1 cut(s) 1167
TaaI ACNGT 4 cut(s) 379, 547, 908, 1052
TaiI ACGT 1 cut(s) 993
TaqI TCGA 7 cut(s) 72, 102, 359, 925, 1006, 1108, 1263
TasI AATT 4 cut(s) 422, 731, 827, 1137
TatI WGTACW 1 cut(s) 602
TauI GCSGC 5 cut(s) 45, 48, 242, 263, 1325
TfiI GAWTC 5 cut(s) 306, 344, 889, 1074, 1299
TscAI CASTG 2 cut(s) 775, 1057
TseFI GTSAC 2 cut(s) 373, 1052
TseI GCWGC 3 cut(s) 474, 715, 1133
Tsp45I GTSAC 2 cut(s) 373, 1052
TspDTI ATGAA 2 cut(s) 902, 1106
TspRI CASTG 2 cut(s) 775, 1057
XapI RAATTY 1 cut(s) 422
XceI RCATGY 1 cut(s) 969
XhoI CTCGAG 1 cut(s) 924
XmiI GTMKAC 1 cut(s) 96
XspI CTAG 4 cut(s) 677, 1071, 1125, 1283
ZraI GACGTC 1 cut(s) 991
ZrmI AGTACT 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.