AT5G05130

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0017178
Physical Location & Seq
Forward (+)
1512082 .. 1515166
3085 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05130.1

Sequence Viewer

Length: 2646 bp
ATGCGGGTTTTGAAATACTTTCGAGCTCCTTCTTCTCTCCGTCATCGTTCCTCTCCCATGGCTCAGTTTCTTCGACGCTTCTCTTCCTCTCCCATGGCGAACGAAGACGAATTCCAATCTCCGGTGGAACCATCACAGCAGCAATCTCAGGACTGTGTTTCGGAGTCTTATCTGATAGGGTTTGTTATCGCGAACATAGTAGGGTTAAAGTACTATTCCGGCCGAATCAACGGTCGAGAGATGGTGGGTCTGGTTCGAGAACCCTTGAACGTATATGACAATAATGCAATCAGAGTACTCAACACGCGATCTGAGCAAGTGGGTCACATCGAGCGTACAGTAGCAGCCGTTCTCGCGCCGATGATTGATTCTCACACGATCGTCGTCGAGGGTATTGTACCCAATACTCGTTCTAACTCCAATAGGTACAGAATCCCTTGTCAAATTCATGTATTTGCAAAGTTAGAAGCGTCCTCTACTGTGAAATCGACGATTTCTAGAGGTGGGTTAGTATTGATTTCGGAGTCAGATACATCGTTTGGGTTATCTGAGGCTGTTGTGGTTAAGGAACAGATGGGAAATGGAGATAAGAGGAGTGTTGATAAGATTTTTAAACTTGTTGATGAGAATGTGAAGTTAATGGGGAAATTGGTAGCGGCTGAGCCACCTAGGGAAGTGATAAAGTCTGAACTTTTTGCTCATCAGAAGGAAGGATTAGGCTGGTTACTCCATAGAGAGAAATCTGGAGAATTGCCTCCGTTTTGGGAGGAGAAAGATGGAGAATTTTTGAATACTTTGACGAATTACCGCTCGGATAAGCGGCCTGATCCTTTGCGTGGAGGGGTGTTTGCTGATGATATGGGGTTGGGTAAGACCCTTACTTTGCTTTCCCTGATAGCTTTTGATAGATATGGCAATGCATCCACCAGTACGCCAACCGAAGAGCCTTTGGATGGTGAAGGAGACAAGATTGAAAAGAAGGGTAAAAAGAGAGGAAGAGGCAAGAGCAGTGAAAGTGTAACTCGAAAGAAGCTTAAAACTGATGATGTTGTTGGCATGAATGTGTCTCAAAAGACAACGTTGATCGTTTGTCCACCTTCTGTGATTTCAGCATGGATAACACAGTTAGAGGAGCATACTGTACCGGGAATCTTGAAGGTGTATATGTATCATGGTGGCGAAAGGACAGACGATGTTAATGAGCTTATGAAGTATGACATAGTGTTGACTACTTACGGCACTTTAGCTGTTGAGGAATCGTGGGAAGATTCTCCTGTAAAGAAAATGGAGTGGCTGAGAATAATTCTTGATGAGGCACACACCATTAAGAATGCAAATGCTCAACAGAGCCGAGTAGTTTGTAAGTTGAAGGCTTCCCGCAGATGGGCTGTCACAGGAACTCCTATTCAGAATGGTTCATTTGATTTGTACTCTTTGATGGCCTTTCTCCGGTTTGAGCCATTTTCGATTAAGAGTTATTGGCAAAGTTTGATACAACGCCCGCTTGGCCAAGGGAATAAAAAGGGTCTTTCACGTCTGCAGGTTTTAATGGCGACAATTTCGTTAAGAAGAACAAAAGAAAAGAGTTTGATTGGTTTACCGCCTAAGACTGTTGAAACTTGTTATGTTGAGCTTTCTCCGGAAGAACGTCAGTTATATGATCACATGGAAGGAGAAGCGAAAGGTGTTGTGCAGAATCTTATAAATAATGGAAGCTTGATGCGCAACTACTCAACAGTTTTGAGTATAATCTTACGGCTTAGACAGCTTTGCGATGACATGTCTCTATGCCCTCCAGAATTAAGATCTTTTACCACTTCTACATCTGTAGAAGATGTGACTGATAAGCCAGAGCTACTGCAAAAGCTGGTTGCAGCATTGCAAGATGGCGAAGATTTTGACTGTCCAATCTGCATTTCGCCACCAACAAACATCATCATCACTCGATGTGCCCACATCTTTTGCAGGGCTTGTATCCTTCAAACTCTTCAAAGAAGTAAACCATTGTGCCCTCTTTGCCGTGGCTCCCTTACCCAATCTGATCTCTACAATGCTCCGCCTCCTCCTCCGGATTCTTCCAATACCGATGGAGAAGACGCTAAATCTTCAACCAAATCCTCAAAGGTCTCAGCTTTACTATCCCTGCTCATGGCATCGAGACAAGAAAACCCCAACACAAAGTCTGTTGTGTTCTCTCAATTCAGGAAGATGCTGCTTTTACTAGAAACTCCACTAAAAGCTGCGGGTTTCACCATCTTGCGCTTGGATGGAGCAATGACTGTGAAGAAACGGACCCAAGTCATTGGAGAATTTGGGAATCCAGAGTTAACCGGACCTGTGGTGTTGCTTGCGAGCCTCAAGGCCTCTGGTACTGGCATAAACCTAACTGCAGCCTCAAGGGTTTACTTGTTTGACCCGTGGTGGAACCCTGCAGTTGAAGAACAGGCCATGGACAGGATTCATAGGATCGGGCAGAAACAAGAGGTTAAAATGATAAGGATGATTGCGAGAAACAGTATCGAAGAGAGGGTCCTTGAGCTTCAGCAGAAGAAGAAGAATCTAGCAAACGAAGCTTTTAAAAGAAGGCAAAAGAAAGATGAAAGAGAGGTTAACGTTGAAGACGTGGTTGCTCTCATGTCTCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

881

Amino Acids

98.62

Weight (kDa)

8.9

Isoelectric Point (pI)

50.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIRAN PF08797 59 - 155 8.9e-23 HIRAN domain
SNF2-rel_dom PF00176 234 - 595 3.1e-69 SNF2-related domain
zf-C3HC4_3 PF13920 633 - 679 1.8e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 634 - 674 4.4e-07 Ring finger domain
zf-C3HC4_2 PF13923 635 - 673 3.6e-07 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 635 - 673 4.1e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 635 - 674 8.5e-06 zinc-RING finger domain
Helicase_C PF00271 708 - 824 2.6e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0017178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05130
fragaria_vesca FvH4_5g29290
malus_domestica MD15G1139300.v1.1
prunus_persica Prupe.7G028900_v2.0.a1
pyrus_communis pycom520g00520
rosa_chinensis RchiOBHm_Chr7g0222151
rosa_laevigata RLG00000002088
rosa_multiflora Rmu_sc0009183.1_g000008
rosa_roxburghii Rroxscaffold_3G00237370
rosa_rugosa Rorug07G0205700
rosa_samantha Rh7BG336900 Rh7DG345000
rosa_wichuraiana Rw7G029390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1703
Acc16I TGCGCA 1 cut(s) 1724
Acc36I ACCTGC 1 cut(s) 1531
AccBSI CCGCTC 1 cut(s) 810
AccII CGCG 3 cut(s) 191, 307, 356
AccIII TCCGGA 2 cut(s) 1639, 2068
AciI CCGC 9 cut(s) 4, 656, 808, 820, 1378, 1502, 1601, 2057, 2243
AclI AACGTT 2 cut(s) 1079, 2613
AclWI GGATC 2 cut(s) 821, 2474
AcoI YGGCCR 2 cut(s) 220, 1507
AcsI RAATTY 4 cut(s) 110, 444, 782, 2309
AcuI CTGAAG 1 cut(s) 2525
AfaI GTAC 9 cut(s) 212, 297, 337, 399, 428, 931, 1143, 1430, 2371
AfiI CCNNNNNNNGG 8 cut(s) 121, 836, 953, 1383, 1384, 1449, 2149, 2454
AflIII ACRYGT 1 cut(s) 1779
AjiI CACGTC 2 cut(s) 1535, 2623
AjuI GAANNNNNNNTTGG 2 cut(s) 1900, 1932
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 5 cut(s) 957, 1071, 1788, 2131, 2152
AlwI GGATC 2 cut(s) 821, 2474
Aor13HI TCCGGA 2 cut(s) 1639, 2068
AoxI GGCC 6 cut(s) 220, 821, 1440, 1507, 2361, 2445
ApeKI GCWGC 6 cut(s) 139, 344, 1874, 2212, 2240, 2390
ApoI RAATTY 4 cut(s) 110, 444, 782, 2309
ArsI GACNNNNNNTTYG 6 cut(s) 217, 249, 865, 897, 2514, 2546
AspA2I CCTAGG 1 cut(s) 668
AspLEI GCGC 3 cut(s) 358, 1725, 2262
AspS9I GGNCC 3 cut(s) 2292, 2333, 2530
AsuC2I CCSGG 1 cut(s) 1146
AsuHPI GGTGA 2 cut(s) 968, 2242
AvaII GGWCC 3 cut(s) 2292, 2333, 2530
AvrII CCTAGG 1 cut(s) 668
BaeGI GKGCMC 2 cut(s) 1954, 2012
BalI TGGCCA 1 cut(s) 1509
BanII GRGCYC 1 cut(s) 28
BbsI GAAGAC 3 cut(s) 111, 2100, 2625
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 6 cut(s) 151, 356, 1886, 2199, 2227, 2402
BceAI ACGGC 4 cut(s) 332, 1252, 1772, 2004
BciVI GTATCC 1 cut(s) 1985
BclI TGATCA 1 cut(s) 1660
BcnI CCSGG 1 cut(s) 1146
BcoDI GTCTC 5 cut(s) 957, 1071, 1788, 2131, 2152
BfaI CTAG 4 cut(s) 498, 669, 2222, 2561
BfmI CTRYAG 4 cut(s) 1538, 1827, 2388, 2430
BfuAI ACCTGC 1 cut(s) 1531
BfuI GTATCC 1 cut(s) 1985
BglI GCCNNNNNGGC 1 cut(s) 1506
BglII AGATCT 1 cut(s) 1805
BisI GCNGC 8 cut(s) 140, 345, 657, 821, 1875, 2213, 2241, 2391
BlnI CCTAGG 1 cut(s) 668
BlpI GCTNAGC 1 cut(s) 660
BlsI GCNGC 8 cut(s) 141, 346, 658, 822, 1876, 2214, 2242, 2392
BmcAI AGTACT 2 cut(s) 212, 297
Bme1390I CCNGG 1 cut(s) 1146
Bme18I GGWCC 3 cut(s) 2292, 2333, 2530
BmgBI CACGTC 2 cut(s) 1535, 2623
BmgT120I GGNCC 3 cut(s) 2292, 2333, 2530
BmiI GGNNCC 5 cut(s) 129, 2026, 2294, 2426, 2531
BmrFI CCNGG 1 cut(s) 1146
BmsI GCATC 4 cut(s) 929, 1710, 2162, 2199
BoxI GACNNNNGTC 1 cut(s) 2297
BpiI GAAGAC 3 cut(s) 111, 2100, 2625
BpmI CTGGAG 2 cut(s) 765, 1779
Bpu1102I GCTNAGC 1 cut(s) 660
BpuEI CTTGAG 3 cut(s) 2342, 2380, 2555
BpuMI CCSGG 1 cut(s) 1146
BsaI GGTCTC 1 cut(s) 2131
BsaJI CCNNGG 7 cut(s) 57, 93, 668, 1510, 2020, 2417, 2448
BsaWI WCCGGW 5 cut(s) 121, 1449, 1639, 2068, 2330
BsaXI ACNNNNNCTCC 2 cut(s) 1384, 1414
Bsc4I CCNNNNNNNGG 8 cut(s) 121, 836, 953, 1383, 1384, 1449, 2149, 2454
Bse1I ACTGG 2 cut(s) 927, 2377
Bse3DI GCAATG 3 cut(s) 922, 1877, 2280
BseAI TCCGGA 2 cut(s) 1639, 2068
BseDI CCNNGG 7 cut(s) 57, 93, 668, 1510, 2020, 2417, 2448
BseGI GGATG 4 cut(s) 920, 958, 2272, 2505
BseLI CCNNNNNNNGG 8 cut(s) 121, 836, 953, 1383, 1384, 1449, 2149, 2454
BseMI GCAATG 3 cut(s) 922, 1877, 2280
BseMII CTCAG 7 cut(s) 77, 161, 303, 540, 651, 1286, 2142
BseNI ACTGG 2 cut(s) 927, 2377
BseRI GAGGAG 5 cut(s) 607, 782, 1145, 2052, 2055
BseSI GKGCMC 2 cut(s) 1954, 2012
BseX3I CGGCCG 1 cut(s) 220
BseXI GCAGC 6 cut(s) 151, 356, 1886, 2199, 2227, 2402
BsgI GTGCAG 1 cut(s) 1712
Bsh1236I CGCG 3 cut(s) 191, 307, 356
Bsh1285I CGRYCG 3 cut(s) 223, 235, 381
BshFI GGCC 6 cut(s) 222, 823, 1442, 1509, 2363, 2447
BsiEI CGRYCG 3 cut(s) 223, 235, 381
BsiHKAI GWGCWC 1 cut(s) 28
BsiSI CCGG 7 cut(s) 122, 219, 1145, 1450, 1640, 2069, 2331
BslI CCNNNNNNNGG 8 cut(s) 121, 836, 953, 1383, 1384, 1449, 2149, 2454
BsmAI GTCTC 5 cut(s) 957, 1071, 1788, 2131, 2152
BsmI GAATGC 1 cut(s) 1336
BsnI GGCC 6 cut(s) 222, 823, 1442, 1509, 2363, 2447
Bso31I GGTCTC 1 cut(s) 2131
Bsp1286I GDGCHC 3 cut(s) 28, 1954, 2012
Bsp13I TCCGGA 2 cut(s) 1639, 2068
Bsp143I GATC 8 cut(s) 308, 378, 826, 1083, 1660, 1805, 2041, 2466
Bsp1720I GCTNAGC 1 cut(s) 660
Bsp19I CCATGG 3 cut(s) 57, 93, 2448
Bsp68I TCGCGA 1 cut(s) 191
BspACI CCGC 9 cut(s) 4, 656, 808, 820, 1378, 1502, 1601, 2057, 2243
BspANI GGCC 6 cut(s) 222, 823, 1442, 1509, 2363, 2447
BspCNI CTCAG 7 cut(s) 76, 160, 304, 541, 652, 1287, 2141
BspEI TCCGGA 2 cut(s) 1639, 2068
BspFNI CGCG 3 cut(s) 191, 307, 356
BspLI GGNNCC 5 cut(s) 129, 2026, 2294, 2426, 2531
BspMAI CTGCAG 3 cut(s) 1542, 2392, 2434
BspMI ACCTGC 1 cut(s) 1531
BspPI GGATC 2 cut(s) 821, 2474
BspQI GCTCTTC 1 cut(s) 936
BspTNI GGTCTC 1 cut(s) 2131
BsrBI CCGCTC 1 cut(s) 810
BsrDI GCAATG 3 cut(s) 922, 1877, 2280
BsrI ACTGG 2 cut(s) 927, 2377
BssECI CCNNGG 7 cut(s) 57, 93, 668, 1510, 2020, 2417, 2448
BssMI GATC 8 cut(s) 308, 378, 826, 1083, 1660, 1805, 2041, 2466
BssT1I CCWWGG 5 cut(s) 57, 93, 668, 1510, 2448
Bst6I CTCTTC 5 cut(s) 88, 936, 991, 1992, 2517
BstC8I GCNNGC 3 cut(s) 1502, 2349, 2353
BstDEI CTNAG 9 cut(s) 63, 147, 312, 549, 660, 1295, 1605, 1760, 2128
BstDSI CCRYGG 5 cut(s) 57, 93, 2020, 2417, 2448
BstF5I GGATG 4 cut(s) 920, 958, 2272, 2505
BstFNI CGCG 3 cut(s) 191, 307, 356
BstHHI GCGC 3 cut(s) 358, 1725, 2262
BstKTI GATC 8 cut(s) 311, 381, 829, 1086, 1663, 1808, 2044, 2469
BstMAI GTCTC 5 cut(s) 957, 1071, 1788, 2131, 2152
BstMBI GATC 8 cut(s) 308, 378, 826, 1083, 1660, 1805, 2041, 2466
BstMCI CGRYCG 3 cut(s) 223, 235, 381
BstMWI GCNNNNNNNGC 7 cut(s) 313, 353, 1506, 1722, 1765, 2016, 2570
BstNSI RCATGY 1 cut(s) 1783
BstPAI GACNNNNGTC 1 cut(s) 2297
BstSCI CCNGG 1 cut(s) 1144
BstSFI CTRYAG 4 cut(s) 1538, 1827, 2388, 2430
BstSLI GKGCMC 2 cut(s) 1954, 2012
BstUI CGCG 3 cut(s) 191, 307, 356
BstV1I GCAGC 6 cut(s) 151, 356, 1886, 2199, 2227, 2402
BstV2I GAAGAC 3 cut(s) 111, 2100, 2625
BstX2I RGATCY 1 cut(s) 1805
BstXI CCANNNNNNTGG 1 cut(s) 2303
BstYI RGATCY 1 cut(s) 1805
BstZI CGGCCG 1 cut(s) 220
BsuI GTATCC 1 cut(s) 1985
BsuRI GGCC 6 cut(s) 222, 823, 1442, 1509, 2363, 2447
BtgI CCRYGG 5 cut(s) 57, 93, 2020, 2417, 2448
BtgZI GCGATG 1 cut(s) 1788
BtrI CACGTC 2 cut(s) 1535, 2623
BtsCI GGATG 4 cut(s) 920, 958, 2272, 2505
BtsI GCAGTG 1 cut(s) 1015
BtsIMutI CAGTG 1 cut(s) 1015
BtuMI TCGCGA 1 cut(s) 191
BveI ACCTGC 1 cut(s) 1531
Cac8I GCNNGC 3 cut(s) 1502, 2349, 2353
CfoI GCGC 3 cut(s) 358, 1725, 2262
Cfr13I GGNCC 3 cut(s) 2292, 2333, 2530
CseI GACGC 3 cut(s) 84, 459, 2105
Csp6I GTAC 9 cut(s) 211, 296, 336, 398, 427, 930, 1142, 1429, 2370
CspCI CAANNNNNGTGG 2 cut(s) 1943, 1978
CviQI GTAC 9 cut(s) 211, 296, 336, 398, 427, 930, 1142, 1429, 2370
DdeI CTNAG 9 cut(s) 63, 147, 312, 549, 660, 1295, 1605, 1760, 2128
DpnI GATC 8 cut(s) 310, 380, 828, 1085, 1662, 1807, 2043, 2468
DpnII GATC 8 cut(s) 308, 378, 826, 1083, 1660, 1805, 2041, 2466
DraI TTTAAA 2 cut(s) 613, 2578
EaeI YGGCCR 2 cut(s) 220, 1507
EagI CGGCCG 1 cut(s) 220
Eam1104I CTCTTC 5 cut(s) 88, 936, 991, 1992, 2517
EarI CTCTTC 5 cut(s) 88, 936, 991, 1992, 2517
EciI GGCGGA 1 cut(s) 2046
Ecl136II GAGCTC 1 cut(s) 26
EclXI CGGCCG 1 cut(s) 220
Eco130I CCWWGG 5 cut(s) 57, 93, 668, 1510, 2448
Eco147I AGGCCT 1 cut(s) 2363
Eco24I GRGCYC 1 cut(s) 28
Eco31I GGTCTC 1 cut(s) 2131
Eco47I GGWCC 3 cut(s) 2292, 2333, 2530
Eco52I CGGCCG 1 cut(s) 220
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 2525
EcoICRI GAGCTC 1 cut(s) 26
EcoO109I RGGNCCY 1 cut(s) 2530
EcoRI GAATTC 1 cut(s) 110
EcoT14I CCWWGG 5 cut(s) 57, 93, 668, 1510, 2448
EcoT22I ATGCAT 1 cut(s) 922
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 5 cut(s) 57, 93, 668, 1510, 2448
FauI CCCGC 3 cut(s) 1385, 1509, 2236
FbaI TGATCA 1 cut(s) 1660
Fnu4HI GCNGC 8 cut(s) 140, 345, 657, 821, 1875, 2213, 2241, 2391
FokI GGATG 4 cut(s) 907, 965, 2279, 2512
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 8 cut(s) 140, 345, 657, 821, 1875, 2213, 2241, 2391
FspBI CTAG 4 cut(s) 498, 669, 2222, 2561
FspI TGCGCA 1 cut(s) 1724
GlaI GCGC 3 cut(s) 357, 1724, 2261
GluI GCNGC 8 cut(s) 140, 345, 657, 821, 1875, 2213, 2241, 2391
GsuI CTGGAG 2 cut(s) 765, 1779
HaeIII GGCC 6 cut(s) 222, 823, 1442, 1509, 2363, 2447
HapII CCGG 7 cut(s) 122, 219, 1145, 1450, 1640, 2069, 2331
HgaI GACGC 3 cut(s) 84, 459, 2105
HhaI GCGC 3 cut(s) 358, 1725, 2262
Hin6I GCGC 3 cut(s) 356, 1723, 2260
HinP1I GCGC 3 cut(s) 356, 1723, 2260
HincII GTYRAC 3 cut(s) 1227, 2328, 2611
HindII GTYRAC 3 cut(s) 1227, 2328, 2611
HindIII AAGCTT 3 cut(s) 1031, 1714, 2571
HpaI GTTAAC 2 cut(s) 2328, 2611
HpaII CCGG 7 cut(s) 122, 219, 1145, 1450, 1640, 2069, 2331
HphI GGTGA 2 cut(s) 968, 2242
Hpy166II GTNNAC 7 cut(s) 1094, 1227, 1598, 2000, 2328, 2404, 2611
Hpy8I GTNNAC 7 cut(s) 1094, 1227, 1598, 2000, 2328, 2404, 2611
Hpy99I CGWCG 4 cut(s) 78, 386, 389, 493
HpyCH4IV ACGT 6 cut(s) 270, 1079, 1534, 1648, 2613, 2622
HpyF10VI GCNNNNNNNGC 7 cut(s) 313, 353, 1506, 1722, 1765, 2016, 2570
HpyF3I CTNAG 9 cut(s) 63, 147, 312, 549, 660, 1295, 1605, 1760, 2128
HpySE526I ACGT 6 cut(s) 270, 1079, 1534, 1648, 2613, 2622
HspAI GCGC 3 cut(s) 356, 1723, 2260
Kpn2I TCCGGA 2 cut(s) 1639, 2068
Ksp22I TGATCA 1 cut(s) 1660
KspAI GTTAAC 2 cut(s) 2328, 2611
Kzo9I GATC 8 cut(s) 308, 378, 826, 1083, 1660, 1805, 2041, 2466
LguI GCTCTTC 1 cut(s) 936
LmnI GCTCC 5 cut(s) 31, 1132, 2030, 2059, 2270
Lsp1109I GCAGC 6 cut(s) 151, 356, 1886, 2199, 2227, 2402
LweI GCATC 4 cut(s) 929, 1710, 2162, 2199
MaeI CTAG 4 cut(s) 498, 669, 2222, 2561
MaeII ACGT 6 cut(s) 270, 1079, 1534, 1648, 2613, 2622
MaeIII GTNAC 5 cut(s) 323, 723, 1018, 1390, 1837
MalI GATC 8 cut(s) 310, 380, 828, 1085, 1662, 1807, 2043, 2468
MbiI CCGCTC 1 cut(s) 810
MboI GATC 8 cut(s) 308, 378, 826, 1083, 1660, 1805, 2041, 2466
MflI RGATCY 1 cut(s) 1805
MhlI GDGCHC 3 cut(s) 28, 1954, 2012
MlsI TGGCCA 1 cut(s) 1509
MluNI TGGCCA 1 cut(s) 1509
MlyI GAGTC 2 cut(s) 173, 533
Mox20I TGGCCA 1 cut(s) 1509
Mph1103I ATGCAT 1 cut(s) 922
MroI TCCGGA 2 cut(s) 1639, 2068
MscI TGGCCA 1 cut(s) 1509
MslI CAYNNNNRTG 1 cut(s) 1061
Msp20I TGGCCA 1 cut(s) 1509
MspI CCGG 7 cut(s) 122, 219, 1145, 1450, 1640, 2069, 2331
MspR9I CCNGG 1 cut(s) 1146
Mva1269I GAATGC 1 cut(s) 1336
MvnI CGCG 3 cut(s) 191, 307, 356
MwoI GCNNNNNNNGC 7 cut(s) 313, 353, 1506, 1722, 1765, 2016, 2570
NciI CCSGG 1 cut(s) 1146
NcoI CCATGG 3 cut(s) 57, 93, 2448
NdeII GATC 8 cut(s) 308, 378, 826, 1083, 1660, 1805, 2041, 2466
NlaIV GGNNCC 5 cut(s) 129, 2026, 2294, 2426, 2531
NmeAIII GCCGAG 1 cut(s) 1376
NmuCI GTSAC 3 cut(s) 323, 1390, 1837
NruI TCGCGA 1 cut(s) 191
NsbI TGCGCA 1 cut(s) 1724
NsiI ATGCAT 1 cut(s) 922
NspI RCATGY 1 cut(s) 1783
PceI AGGCCT 1 cut(s) 2363
PciI ACATGT 1 cut(s) 1779
PciSI GCTCTTC 1 cut(s) 936
PcsI WCGNNNNNNNCGW 1 cut(s) 2619
PctI GAATGC 1 cut(s) 1336
PkrI GCNGC 8 cut(s) 141, 346, 658, 822, 1876, 2214, 2242, 2392
Ple19I CGATCG 1 cut(s) 381
PleI GAGTC 2 cut(s) 172, 532
PpsI GAGTC 2 cut(s) 172, 532
PpuMI RGGWCCY 1 cut(s) 2530
PscI ACATGT 1 cut(s) 1779
PshAI GACNNNNGTC 1 cut(s) 2297
PsiI TTATAA 1 cut(s) 1703
Psp124BI GAGCTC 1 cut(s) 28
Psp1406I AACGTT 2 cut(s) 1079, 2613
Psp5II RGGWCCY 1 cut(s) 2530
PspN4I GGNNCC 5 cut(s) 129, 2026, 2294, 2426, 2531
PspPI GGNCC 3 cut(s) 2292, 2333, 2530
PspPPI RGGWCCY 1 cut(s) 2530
PsrI GAACNNNNNNTAC 2 cut(s) 333, 365
PstI CTGCAG 3 cut(s) 1542, 2392, 2434
PsuI RGATCY 1 cut(s) 1805
PvuI CGATCG 1 cut(s) 381
RruI TCGCGA 1 cut(s) 191
RsaI GTAC 9 cut(s) 212, 297, 337, 399, 428, 931, 1143, 1430, 2371
RsaNI GTAC 9 cut(s) 211, 296, 336, 398, 427, 930, 1142, 1429, 2370
RseI CAYNNNNRTG 1 cut(s) 1061
SacI GAGCTC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 936
SatI GCNGC 8 cut(s) 140, 345, 657, 821, 1875, 2213, 2241, 2391
Sau3AI GATC 8 cut(s) 308, 378, 826, 1083, 1660, 1805, 2041, 2466
Sau96I GGNCC 3 cut(s) 2292, 2333, 2530
ScaI AGTACT 2 cut(s) 212, 297
SchI GAGTC 2 cut(s) 173, 533
ScrFI CCNGG 1 cut(s) 1146
SduI GDGCHC 3 cut(s) 28, 1954, 2012
SfaNI GCATC 4 cut(s) 929, 1710, 2162, 2199
SfcI CTRYAG 4 cut(s) 1538, 1827, 2388, 2430
SinI GGWCC 3 cut(s) 2292, 2333, 2530
SmiMI CAYNNNNRTG 1 cut(s) 1061
SmlI CTYRAG 3 cut(s) 2357, 2395, 2534
SmoI CTYRAG 3 cut(s) 2357, 2395, 2534
SseBI AGGCCT 1 cut(s) 2363
SsiI CCGC 9 cut(s) 4, 656, 808, 820, 1378, 1502, 1601, 2057, 2243
SspMI CTAG 4 cut(s) 498, 669, 2222, 2561
SstI GAGCTC 1 cut(s) 28
StuI AGGCCT 1 cut(s) 2363
StyD4I CCNGG 1 cut(s) 1144
StyI CCWWGG 5 cut(s) 57, 93, 668, 1510, 2448
TaiI ACGT 6 cut(s) 273, 1082, 1537, 1651, 2616, 2625
TatI WGTACW 3 cut(s) 210, 295, 1428
TauI GCSGC 2 cut(s) 659, 823
TscAI CASTG 1 cut(s) 1015
TseFI GTSAC 3 cut(s) 323, 1390, 1837
TseI GCWGC 6 cut(s) 139, 344, 1874, 2212, 2240, 2390
Tsp45I GTSAC 3 cut(s) 323, 1390, 1837
TspDTI ATGAA 6 cut(s) 437, 1073, 1223, 1407, 2450, 2613
TspGWI ACGGA 3 cut(s) 29, 747, 2305
TspRI CASTG 1 cut(s) 1015
VpaK11BI GGWCC 3 cut(s) 2292, 2333, 2530
XapI RAATTY 4 cut(s) 110, 444, 782, 2309
XbaI TCTAGA 1 cut(s) 497
XceI RCATGY 1 cut(s) 1783
XcmI CCANNNNNNNNNTGG 1 cut(s) 2260
XmaJI CCTAGG 1 cut(s) 668
XspI CTAG 4 cut(s) 498, 669, 2222, 2561
ZrmI AGTACT 2 cut(s) 212, 297
Zsp2I ATGCAT 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.