MD15G1139300.v1.1

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Reverse (-)
10196035 .. 10200732
4698 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1139300.v1.1.491

Sequence Viewer

Length: 2559 bp
ATGGAGGAAGAAGATCCCGTAAAACTCTTCATGTCCCTCGATCAGTGGCAAGACCCTCCGCCCGACGCCGATGACTTTGCCGCTCTTTCTTCCCAGGACCAAGACTCGCAGTCTCTCTCTTCTTCCTCGGACACCTTCATGCTCGGCTTCGTCATCGCCAGCATCGTTGGAATTCAATACTATTCAGGCACCATCAGTGGCCGAGAAATGGTGGGTCTTGTCCGCGAACCCCTCAATCCCTACGACTCCAACGCCATCAAAGTCCTTAATACCGAAACGCGTCAGGTGGGTCACATCGAACGCTCCGTCGCCGCCGTCCTTGCCCCCTTGATCGACTCGAATTTGATTTCCGTCGAAGGCATTGTGCCCAATATGCGCTCTAAGCCCAACAGGTTCAAGATTCCTTGCCAAGTTCACATCTTTGCAAGGTTTGAAGCCTTTCCCTCTGCGAAATCAGCAATTTTGCAATCTGGGTTGCAGCTGATTTCCGATTCCGATGCGTCTTTCACTCTATCCGAGTCAGTGGTTGTCAAGGAGAAGAAGGCTGAGAGGGGTTCCAAGAGTGTAGATGAGATTTTTAAGCTGGTGGAGGAGAGTGCGAGCAGAAAGGGGGCCTTACAAGCATTGGAACCTCCAAATCAAAAAGGTGGTTCTTTTGTGAATGTCTTGACCAATTACCACACTGATAAGCGACCGGAGCCTCTAAGAGGTGGGATTTTCGCTGACGATATGGGGTTGGGTAAGACTTTAACTTTGCTGTCTTTGATTGCGTTTGATAAATATGGTAGTTCAGATGTAAGCGTACTAGATGATAACAAAATGCGTGAGGATGAGTCTTTGTCTGTTTCTTTTAGTAAGAAAGGTAAGAGGGGTGCCCCAAGTAAAAAAGGCACCGGGTCACTGAAAAAACGCAAAACTGAGGATGCCAGTGCTGGCAGCAATGTGGAAGAAAAATGTTTGAGTGTAGATGATAAGTCTTTGGGGTATTGTAGTACCAAGACAACATTAGTTGTGTGCCCACCTTCTGTATTTTCGACTTGGGTAACACAACTAGGAGAGCACACTAGGCCGGGTAGACTGAAGGTGTATATGTACTACGGAGAGCGGACTAGCAATGCTGAGGAGCTTAAGGAGTATGATATAGTGTTGACTACATATAGTATTTTGGCTACTGAAAATTCTTGGACGGAATCCCCTGTTAAAGAGATTGAGTGGTGGAGGGTCATTTTGGATGAGGCACACATGATTAAGAATGTTAATGCTCAACAAAGTCAAGCTGTTACTAGTTTGAAGGCTAAGCGAAGGTGGGCGGTTACTGGAACACCCATCCAGAATAGCTCATTTGATTTGTTTTCTTTGATGGCATTTTTGCGGTTTGAGCCTTTTTCAATTAAGAGCTACTGGCAAAGCTTGGTGCAGCGCCCACTTGCTCATGGCAACCAAAAAGGGCTCGTACGGCTGCAGGTTCTAATGGAAACCATTTCTTTGCGAAGAACAAAAGACAAAGGGCTGATTGGATTACCTCCTAAAACTTTAGAGATTTGTTATGTGGAACTCTCTGGTGAAGAACGTGAACTATATGATCAGATGGAAGGAGAAGCAAAGAGTGTTGTGAGGAGTTACATTGATGCTGATAGTGTAATGCGCAACTATTCCACTGTACTTAGCATCATCTTACGACTTCGGCAGATCTGTACTGATGTGGCATTGTGCCCTTCTGATCTCAAATCACTTCTCCCTTCGAACAATATTGAAGATGCGTCCAAGAACCCTGAGCTGCTGAAAAAGATTGTTGAGGTGCTGCAAGACGGTGAAGATTTTGATTGTCCTATTTGCATTTCTCCGCCAACGGATATTGTTATTACTTGTTGTGCTCACATTTTTTGCCAAGCTTGTATTCTGAAAACCCTTCAGCGCACAAAACCCTGCTGTCCCCTTTGCCGCCATGCTTTATCACATTCTGATCTGTTCTCAGCCCCTCAAACAGCTTCAGACAGTGACAACACAGCATCCTTGAAAACAACCTTGTCGTCAAAAGTAAATGCTCTCTTAAAACTTCTTGTCGCATCGAGGGAGCAAAACCCACTTACAAAATCAGTAGTGTTTTCCCAGTTCCGAAAGATGCTGATATATCTTGAAGAGCCACTCAAAGCAGCTGGTTTTAAGACTTTGCGGTTAGATGGGTCCATGAATGCAAAGAAAAGGGCACAAGTAATCAAAGAATTTGGGATGACGGGACAAGATGCGCCCACGATTTTGCTTGCAAGTCTCAAGGCTTCAGGAACAGGTATAAACCTTACAGCTGCAAGTAGAGTGTATTTGTTGGAGCCATGGTGGAACCCAGCAGTTGAGGAACAGGCAATGGATCGCGTTCACCGGATTGGGCAGAAGGAAGATGTGAAGATTGTGAGGATTGTTGCTCGAGACAGCATTGAAGAGAGGATACTAGAGTTGCAAGACAAAAAGAAGAAACTTGCTAAGGAAGCTTTCCGGGGGAAGGCTGCAAAGGATCGGAGGGATGTAGGGGCCGATGATCTTCTTGTCCTCATGGGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

853

Amino Acids

94.56

Weight (kDa)

7.45

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIRAN PF08797 49 - 139 3.9e-22 HIRAN domain
SNF2-rel_dom PF00176 234 - 567 4.4e-67 SNF2-related domain
Helicase_C PF00271 679 - 795 3.3e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05130
fragaria_vesca FvH4_5g29290
malus_domestica MD15G1139300.v1.1
prunus_persica Prupe.7G028900_v2.0.a1
pyrus_communis pycom520g00520
rosa_chinensis RchiOBHm_Chr7g0222151
rosa_laevigata RLG00000002088
rosa_multiflora Rmu_sc0009183.1_g000008
rosa_roxburghii Rroxscaffold_3G00237370
rosa_rugosa Rorug07G0205700
rosa_samantha Rh7BG336900 Rh7DG345000
rosa_wichuraiana Rw7G029390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1646
Acc36I ACCTGC 1 cut(s) 1453
AccB1I GGYRCC 3 cut(s) 188, 872, 890
AccBSI CCGCTC 2 cut(s) 83, 1105
AccI GTMKAC 1 cut(s) 1075
AccII CGCG 3 cut(s) 225, 280, 2370
AclWI GGATC 3 cut(s) 8, 2373, 2517
AcoI YGGCCR 1 cut(s) 199
AcsI RAATTY 4 cut(s) 171, 340, 1177, 2222
AcuI CTGAAG 4 cut(s) 1100, 1895, 1974, 2262
AcyI GRCGYC 1 cut(s) 66
AfaI GTAC 6 cut(s) 804, 994, 1094, 1455, 1662, 1696
AfiI CCNNNNNNNGG 3 cut(s) 208, 707, 2497
AflII CTTAAG 1 cut(s) 1127
AflIII ACRYGT 1 cut(s) 278
AgsI TTSAA 9 cut(s) 176, 397, 434, 1291, 1389, 1754, 2017, 2138, 2435
AhdI GACNNNNNGTC 1 cut(s) 109
AhlI ACTAGT 1 cut(s) 1283
AjnI CCWGG 1 cut(s) 93
AjuI GAANNNNNNNTTGG 2 cut(s) 1881, 1913
Alw21I GWGCWC 2 cut(s) 1062, 1876
Alw26I GTCTC 3 cut(s) 117, 2273, 2418
AlwI GGATC 3 cut(s) 8, 2373, 2517
Ama87I CYCGRG 1 cut(s) 2421
AoxI GGCC 4 cut(s) 199, 612, 1067, 2526
ApeKI GCWGC 9 cut(s) 478, 936, 1417, 1459, 1777, 1801, 2153, 2303, 2501
ApoI RAATTY 4 cut(s) 171, 340, 1177, 2222
ArsI GACNNNNNNTTYG 4 cut(s) 291, 323, 736, 768
Asp700I GAANNNNTTC 1 cut(s) 438
AspLEI GCGC 5 cut(s) 378, 1422, 1647, 1917, 2248
AspS9I GGNCC 4 cut(s) 97, 612, 2184, 2526
AsuC2I CCSGG 3 cut(s) 895, 1071, 2492
AsuHPI GGTGA 3 cut(s) 1574, 1823, 2366
AsuII TTCGAA 1 cut(s) 1742
AvaI CYCGRG 1 cut(s) 2421
AvaII GGWCC 2 cut(s) 97, 2184
BaeGI GKGCMC 5 cut(s) 369, 877, 1019, 1715, 2209
BaeI ACNNNNGTAYC 2 cut(s) 2435, 2468
BanI GGYRCC 3 cut(s) 188, 872, 890
BanII GRGCYC 1 cut(s) 1452
BarI GAAGNNNNNNTAC 2 cut(s) 2427, 2459
Bbv12I GWGCWC 2 cut(s) 1062, 1876
BbvCI CCTCAGC 1 cut(s) 1119
BbvI GCAGC 9 cut(s) 490, 948, 1429, 1446, 1764, 1788, 2165, 2290, 2488
BccI CCATC 6 cut(s) 200, 263, 1334, 1354, 1582, 2174
BceAI ACGGC 2 cut(s) 299, 1472
BcgI CGANNNNNNTGC 4 cut(s) 59, 93, 479, 513
BciT130I CCWGG 1 cut(s) 95
BciVI GTATCC 1 cut(s) 2436
BclI TGATCA 1 cut(s) 1582
BcnI CCSGG 3 cut(s) 895, 1071, 2492
BcoDI GTCTC 3 cut(s) 117, 2273, 2418
BcuI ACTAGT 1 cut(s) 1283
BfaI CTAG 6 cut(s) 806, 1052, 1065, 1110, 1284, 2447
BfmI CTRYAG 1 cut(s) 1460
BfoI RGCGCY 1 cut(s) 1423
BfrI CTTAAG 1 cut(s) 1127
BfuAI ACCTGC 1 cut(s) 1453
BfuI GTATCC 1 cut(s) 2436
BglII AGATCT 1 cut(s) 1689
BlpI GCTNAGC 1 cut(s) 1296
Bme1390I CCNGG 4 cut(s) 95, 895, 1071, 2492
Bme18I GGWCC 2 cut(s) 97, 2184
BmeRI GACNNNNNGTC 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 2421
BmgT120I GGNCC 4 cut(s) 97, 612, 2184, 2526
BmrFI CCNGG 4 cut(s) 95, 895, 1071, 2492
BmrI ACTGGG 1 cut(s) 2104
BmuI ACTGGG 1 cut(s) 2104
Bpu10I CCTNAGC 3 cut(s) 1119, 1773, 2478
Bpu1102I GCTNAGC 1 cut(s) 1296
Bpu14I TTCGAA 1 cut(s) 1742
BpuEI CTTGAG 1 cut(s) 2255
BpuMI CCSGG 3 cut(s) 895, 1071, 2492
BsaHI GRCGYC 1 cut(s) 66
BsaJI CCNNGG 4 cut(s) 93, 126, 2330, 2491
BsaWI WCCGGW 2 cut(s) 694, 2376
BsaXI ACNNNNNCTCC 2 cut(s) 2318, 2348
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 707, 2497
Bse1I ACTGG 4 cut(s) 927, 1321, 1406, 2110
Bse3DI GCAATG 3 cut(s) 946, 1120, 2367
BseBI CCWGG 1 cut(s) 95
BseDI CCNNGG 4 cut(s) 93, 126, 2330, 2491
BseGI GGATG 7 cut(s) 835, 928, 1237, 1326, 2009, 2235, 2524
BseLI CCNNNNNNNGG 3 cut(s) 208, 707, 2497
BseMI GCAATG 3 cut(s) 946, 1120, 2367
BseMII CTCAG 5 cut(s) 537, 909, 1110, 1764, 1986
BseNI ACTGG 4 cut(s) 927, 1321, 1406, 2110
BseRI GAGGAG 3 cut(s) 605, 1136, 1630
BseSI GKGCMC 5 cut(s) 369, 877, 1019, 1715, 2209
BseXI GCAGC 9 cut(s) 490, 948, 1429, 1446, 1764, 1788, 2165, 2290, 2488
BseYI CCCAGC 1 cut(s) 2341
BsgI GTGCAG 1 cut(s) 1436
Bsh1236I CGCG 3 cut(s) 225, 280, 2370
Bsh1285I CGRYCG 1 cut(s) 695
BshFI GGCC 4 cut(s) 201, 614, 1069, 2528
BshNI GGYRCC 3 cut(s) 188, 872, 890
BsiEI CGRYCG 1 cut(s) 695
BsiHKAI GWGCWC 2 cut(s) 1062, 1876
BsiHKCI CYCGRG 1 cut(s) 2421
BsiSI CCGG 5 cut(s) 695, 894, 1070, 2377, 2491
BsiWI CGTACG 1 cut(s) 1453
BslFI GGGAC 3 cut(s) 19, 1917, 2250
BslI CCNNNNNNNGG 3 cut(s) 208, 707, 2497
BsmAI GTCTC 3 cut(s) 117, 2273, 2418
BsmFI GGGAC 3 cut(s) 19, 1917, 2250
BsmI GAATGC 1 cut(s) 2197
BsnI GGCC 4 cut(s) 201, 614, 1069, 2528
BsoBI CYCGRG 1 cut(s) 2421
Bsp119I TTCGAA 1 cut(s) 1742
Bsp1286I GDGCHC 8 cut(s) 369, 877, 1019, 1062, 1452, 1715, 1876, 2209
Bsp1720I GCTNAGC 1 cut(s) 1296
Bsp19I CCATGG 1 cut(s) 2330
BspANI GGCC 4 cut(s) 201, 614, 1069, 2528
BspCNI CTCAG 5 cut(s) 538, 910, 1111, 1765, 1985
BspFNI CGCG 3 cut(s) 225, 280, 2370
BspMAI CTGCAG 1 cut(s) 1464
BspMI ACCTGC 1 cut(s) 1453
BspPI GGATC 3 cut(s) 8, 2373, 2517
BspQI GCTCTTC 1 cut(s) 2133
BspT104I TTCGAA 1 cut(s) 1742
BspT107I GGYRCC 3 cut(s) 188, 872, 890
BspTI CTTAAG 1 cut(s) 1127
BsrBI CCGCTC 2 cut(s) 83, 1105
BsrDI GCAATG 3 cut(s) 946, 1120, 2367
BsrI ACTGG 4 cut(s) 927, 1321, 1406, 2110
BssECI CCNNGG 4 cut(s) 93, 126, 2330, 2491
BssNI GRCGYC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 2330
Bst2UI CCWGG 1 cut(s) 95
Bst4CI ACNGT 3 cut(s) 1660, 1811, 1997
Bst6I CTCTTC 4 cut(s) 32, 124, 2133, 2430
BstACI GRCGYC 1 cut(s) 66
BstAFI CTTAAG 1 cut(s) 1127
BstBI TTCGAA 1 cut(s) 1742
BstC8I GCNNGC 4 cut(s) 160, 601, 934, 2262
BstDSI CCRYGG 1 cut(s) 2330
BstENI CCTNNNNNAGG 1 cut(s) 705
BstF5I GGATG 7 cut(s) 835, 928, 1237, 1326, 2009, 2235, 2524
BstFNI CGCG 3 cut(s) 225, 280, 2370
BstH2I RGCGCY 1 cut(s) 1423
BstHHI GCGC 5 cut(s) 378, 1422, 1647, 1917, 2248
BstMAI GTCTC 3 cut(s) 117, 2273, 2418
BstMCI CGRYCG 1 cut(s) 695
BstNI CCWGG 1 cut(s) 95
BstNSI RCATGY 1 cut(s) 2557
BstSCI CCNGG 4 cut(s) 93, 893, 1069, 2490
BstSFI CTRYAG 1 cut(s) 1460
BstSLI GKGCMC 5 cut(s) 369, 877, 1019, 1715, 2209
BstUI CGCG 3 cut(s) 225, 280, 2370
BstV1I GCAGC 9 cut(s) 490, 948, 1429, 1446, 1764, 1788, 2165, 2290, 2488
BstX2I RGATCY 2 cut(s) 13, 1689
BstYI RGATCY 2 cut(s) 13, 1689
BsuI GTATCC 1 cut(s) 2436
BsuRI GGCC 4 cut(s) 201, 614, 1069, 2528
BtgI CCRYGG 1 cut(s) 2330
BtgZI GCGATG 1 cut(s) 139
BtsCI GGATG 7 cut(s) 835, 928, 1237, 1326, 2009, 2235, 2524
BtsIMutI CAGTG 8 cut(s) 50, 202, 528, 681, 899, 934, 1656, 2002
BveI ACCTGC 1 cut(s) 1453
Cac8I GCNNGC 4 cut(s) 160, 601, 934, 2262
CfoI GCGC 5 cut(s) 378, 1422, 1647, 1917, 2248
Cfr13I GGNCC 4 cut(s) 97, 612, 2184, 2526
CseI GACGC 4 cut(s) 74, 269, 489, 1749
Csp6I GTAC 6 cut(s) 803, 993, 1093, 1454, 1661, 1695
CviAII CATG 9 cut(s) 31, 139, 1243, 1433, 1946, 2188, 2331, 2548, 2554
CviQI GTAC 6 cut(s) 803, 993, 1093, 1454, 1661, 1695
DriI GACNNNNNGTC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 199
Eam1104I CTCTTC 4 cut(s) 32, 124, 2133, 2430
Eam1105I GACNNNNNGTC 1 cut(s) 109
EarI CTCTTC 4 cut(s) 32, 124, 2133, 2430
EciI GGCGGA 2 cut(s) 48, 1833
Eco130I CCWWGG 1 cut(s) 2330
Eco24I GRGCYC 1 cut(s) 1452
Eco47I GGWCC 2 cut(s) 97, 2184
Eco57I CTGAAG 4 cut(s) 1100, 1895, 1974, 2262
Eco88I CYCGRG 1 cut(s) 2421
EcoNI CCTNNNNNAGG 1 cut(s) 705
EcoO109I RGGNCCY 1 cut(s) 612
EcoRI GAATTC 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 2330
EcoT38I GRGCYC 1 cut(s) 1452
ErhI CCWWGG 1 cut(s) 2330
FaeI CATG 9 cut(s) 34, 142, 1246, 1436, 1949, 2191, 2334, 2551, 2557
FalI AAGNNNNNCTT 2 cut(s) 599, 631
FaqI GGGAC 3 cut(s) 19, 1917, 2250
FatI CATG 9 cut(s) 30, 138, 1242, 1432, 1945, 2187, 2330, 2547, 2553
FbaI TGATCA 1 cut(s) 1582
FblI GTMKAC 1 cut(s) 1075
FokI GGATG 7 cut(s) 842, 935, 1244, 1313, 1996, 2242, 2531
FriOI GRGCYC 1 cut(s) 1452
FspBI CTAG 6 cut(s) 806, 1052, 1065, 1110, 1284, 2447
FspI TGCGCA 1 cut(s) 1646
GlaI GCGC 5 cut(s) 377, 1421, 1646, 1916, 2247
GsaI CCCAGC 1 cut(s) 2345
HaeII RGCGCY 1 cut(s) 1423
HaeIII GGCC 4 cut(s) 201, 614, 1069, 2528
HapII CCGG 5 cut(s) 695, 894, 1070, 2377, 2491
HgaI GACGC 4 cut(s) 74, 269, 489, 1749
HhaI GCGC 5 cut(s) 378, 1422, 1647, 1917, 2248
Hin1I GRCGYC 1 cut(s) 66
Hin1II CATG 9 cut(s) 34, 142, 1246, 1436, 1949, 2191, 2334, 2551, 2557
Hin6I GCGC 5 cut(s) 376, 1420, 1645, 1915, 2246
HinP1I GCGC 5 cut(s) 376, 1420, 1645, 1915, 2246
HincII GTYRAC 1 cut(s) 1149
HindII GTYRAC 1 cut(s) 1149
HindIII AAGCTT 3 cut(s) 1408, 1890, 2484
HinfI GANTC 8 cut(s) 104, 245, 335, 400, 491, 518, 833, 1190
HpaII CCGG 5 cut(s) 695, 894, 1070, 2377, 2491
HphI GGTGA 3 cut(s) 1574, 1823, 2366
Hpy166II GTNNAC 5 cut(s) 415, 1076, 1149, 1574, 2374
Hpy188III TCNNGA 6 cut(s) 397, 667, 1330, 2135, 2280, 2423
Hpy8I GTNNAC 5 cut(s) 415, 1076, 1149, 1574, 2374
Hpy99I CGWCG 3 cut(s) 68, 311, 356
HpyCH4III ACNGT 3 cut(s) 1660, 1811, 1997
HpyCH4IV ACGT 1 cut(s) 1570
HpySE526I ACGT 1 cut(s) 1570
Hsp92I GRCGYC 1 cut(s) 66
Hsp92II CATG 9 cut(s) 34, 142, 1246, 1436, 1949, 2191, 2334, 2551, 2557
HspAI GCGC 5 cut(s) 376, 1420, 1645, 1915, 2246
Ksp22I TGATCA 1 cut(s) 1582
LguI GCTCTTC 1 cut(s) 2133
LmnI GCTCC 5 cut(s) 308, 697, 1123, 2074, 2326
Lsp1109I GCAGC 9 cut(s) 490, 948, 1429, 1446, 1764, 1788, 2165, 2290, 2488
MaeI CTAG 6 cut(s) 806, 1052, 1065, 1110, 1284, 2447
MaeII ACGT 1 cut(s) 1570
MaeIII GTNAC 7 cut(s) 290, 897, 1042, 1279, 1312, 1619, 1997
MbiI CCGCTC 2 cut(s) 83, 1105
MflI RGATCY 2 cut(s) 13, 1689
MhlI GDGCHC 8 cut(s) 369, 877, 1019, 1062, 1452, 1715, 1876, 2209
MluCI AATT 7 cut(s) 171, 340, 459, 673, 1177, 1389, 2222
MluI ACGCGT 1 cut(s) 278
MlyI GAGTC 5 cut(s) 98, 239, 329, 527, 842
MmeI TCCRAC 3 cut(s) 148, 273, 2304
MroXI GAANNNNTTC 1 cut(s) 438
MslI CAYNNNNRTG 2 cut(s) 137, 2552
MspA1I CMGCKG 3 cut(s) 481, 2156, 2303
MspCI CTTAAG 1 cut(s) 1127
MspI CCGG 5 cut(s) 695, 894, 1070, 2377, 2491
MspR9I CCNGG 4 cut(s) 95, 895, 1071, 2492
Mva1269I GAATGC 1 cut(s) 2197
MvaI CCWGG 1 cut(s) 95
MvnI CGCG 3 cut(s) 225, 280, 2370
NciI CCSGG 3 cut(s) 895, 1071, 2492
NcoI CCATGG 1 cut(s) 2330
NlaIII CATG 9 cut(s) 34, 142, 1246, 1436, 1949, 2191, 2334, 2551, 2557
NmeAIII GCCGAG 2 cut(s) 123, 227
NmuCI GTSAC 3 cut(s) 290, 897, 1997
NsbI TGCGCA 1 cut(s) 1646
NspI RCATGY 1 cut(s) 2557
NspV TTCGAA 1 cut(s) 1742
PaeR7I CTCGAG 1 cut(s) 2421
PciSI GCTCTTC 1 cut(s) 2133
PcsI WCGNNNNNNNCGW 2 cut(s) 162, 303
PctI GAATGC 1 cut(s) 2197
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 3 cut(s) 400, 491, 1190
Pfl23II CGTACG 1 cut(s) 1453
PleI GAGTC 5 cut(s) 98, 239, 329, 526, 841
PpsI GAGTC 5 cut(s) 98, 239, 329, 526, 841
Psp6I CCWGG 1 cut(s) 93
PspFI CCCAGC 1 cut(s) 2341
PspGI CCWGG 1 cut(s) 93
PspLI CGTACG 1 cut(s) 1453
PspPI GGNCC 4 cut(s) 97, 612, 2184, 2526
PstI CTGCAG 1 cut(s) 1464
PsuI RGATCY 2 cut(s) 13, 1689
PvuII CAGCTG 3 cut(s) 481, 2156, 2303
RsaI GTAC 6 cut(s) 804, 994, 1094, 1455, 1662, 1696
RsaNI GTAC 6 cut(s) 803, 993, 1093, 1454, 1661, 1695
RseI CAYNNNNRTG 2 cut(s) 137, 2552
SapI GCTCTTC 1 cut(s) 2133
Sau96I GGNCC 4 cut(s) 97, 612, 2184, 2526
SchI GAGTC 5 cut(s) 98, 239, 329, 527, 842
ScrFI CCNGG 4 cut(s) 95, 895, 1071, 2492
SduI GDGCHC 8 cut(s) 369, 877, 1019, 1062, 1452, 1715, 1876, 2209
SfcI CTRYAG 1 cut(s) 1460
Sfr274I CTCGAG 1 cut(s) 2421
SfuI TTCGAA 1 cut(s) 1742
SinI GGWCC 2 cut(s) 97, 2184
SlaI CTCGAG 1 cut(s) 2421
SmiMI CAYNNNNRTG 2 cut(s) 137, 2552
SmlI CTYRAG 3 cut(s) 1127, 2270, 2421
SmoI CTYRAG 3 cut(s) 1127, 2270, 2421
SpeI ACTAGT 1 cut(s) 1283
Sse9I AATT 7 cut(s) 171, 340, 459, 673, 1177, 1389, 2222
SspI AATATT 1 cut(s) 1750
SspMI CTAG 6 cut(s) 806, 1052, 1065, 1110, 1284, 2447
StyD4I CCNGG 4 cut(s) 93, 893, 1069, 2490
StyI CCWWGG 1 cut(s) 2330
TaaI ACNGT 3 cut(s) 1660, 1811, 1997
TaiI ACGT 1 cut(s) 1573
TaqI TCGA 9 cut(s) 39, 297, 333, 338, 354, 1034, 1742, 2069, 2422
TasI AATT 7 cut(s) 171, 340, 459, 673, 1177, 1389, 2222
TatI WGTACW 3 cut(s) 1092, 1660, 1694
TauI GCSGC 3 cut(s) 83, 314, 1944
TfiI GAWTC 3 cut(s) 400, 491, 1190
TscAI CASTG 8 cut(s) 50, 202, 528, 688, 906, 934, 1663, 2002
TseFI GTSAC 3 cut(s) 290, 897, 1997
TseI GCWGC 9 cut(s) 478, 936, 1417, 1459, 1777, 1801, 2153, 2303, 2501
Tsp45I GTSAC 3 cut(s) 290, 897, 1997
TspDTI ATGAA 3 cut(s) 19, 127, 2204
TspGWI ACGGA 5 cut(s) 295, 340, 1113, 1202, 1865
TspRI CASTG 8 cut(s) 50, 202, 528, 688, 906, 934, 1663, 2002
Vha464I CTTAAG 1 cut(s) 1127
VpaK11BI GGWCC 2 cut(s) 97, 2184
XagI CCTNNNNNAGG 1 cut(s) 705
XapI RAATTY 4 cut(s) 171, 340, 1177, 2222
XceI RCATGY 1 cut(s) 2557
XhoI CTCGAG 1 cut(s) 2421
XmiI GTMKAC 1 cut(s) 1075
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 6 cut(s) 806, 1052, 1065, 1110, 1284, 2447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.