Rroxscaffold_3G00237370

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0017178
Physical Location & Seq
Forward (+)
24947630 .. 24952797
5168 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00237370.1

Sequence Viewer

Length: 2616 bp
ATGGACGATCAAGACCCAGTAAGCCTCTTCTTGAGCCTCGATCAGTGGCAAGGCCCCGCTGCCGACCCTGATAACGACTCTGACCCTCTCCCTACACCCTCCGACACCTACATGCTCGGCTTCGTCATCGCCAACATAGTCGGAATGCAGCACTACTCCGGCACCATCACCGGCCGGGAAATGGTCGGCCTGGTCCGCGAACCTCTCAACCCCTATGATTCCAACGCCATCAGAGTCCTCAACACCAGGACTATCCAAGTCGGCCACATCGAACGCGCCGTCGCCGCCGCCCTCGCCCCGTTGATCGACGCCGACTTGATCGCCGTCGAAGGAATCGTCCCCAACACGCGCGCCAAGGGCAATAGGTTTAAGATTCCTTGCCAGGTTCACATCTTTGCCAGAATCGACGACTTCCCCTCCGTCATATCCGCCATTCACGGCGCTGGCCTGCAGCTGATTTCGGACAACGACGCGGTGTTTTCATCGGAGGCGATGGTGGTGAAGGAGAAGAAGGCTGAGAGGGGGTACAAGACTGTGGATGAGATTTTCAAGCTGGTGGATGACAATGCCAGCCAAAACGGTGCGTTGGAGCCGATGGAGCCTCCGAAGGAAGTGATCAAGTCGGAGCTTTTTCGGCACCAGAAGGAAGGCCTGGGGTGGTTGGTCGGCAGAGAGAATTCTGTTGATTTGCCTCCGTTTTGGGAAGAGAAGAGTGATGGGTCTTTTGTCAATGTGTTGACAAATTACCATACACAAAACCGACCGGAGCCTCTAAGAGGTGGCATCTTTGCAGATGATATGGGTTTGGGTAAGACTCTGACTTTGCTTTCATTGATTGCTTTTGATAGATATGGTAGTGGCAACAGTGCTAGTGTAGATGTAAGCATACCAAATGATAATGAAATGGGTGAGGATGAGGGGTTGCCTGTTTCCGGTAGTAAGAAGGGTAAGAGGAATAAAACAAGTAAAAAGGGAGCTGAGCCAAGGAAAAGACGTAAAACTGAGGATAGCAATGTGAGTGTAAATGATAAGTCTACTGCTGGTTTCAGTAGCAAGTCCACGATCATTGTGTGCCCTCCTTCTGTATTTTCAACATGGGTAACACAGCTAGGAGAACACACTAGGCCAGGCAGATTGAAGGTGTATATGTATTATGGGGACCGGACTCGAAATGCTGAGGAGCTTAAGAAGTACGATATAGTGTTAACTACTTACAGTATTCTTGCTACTGAACATTCTTGGCCCAGCTCTCCTGTTAAAGAGATTGAGTGGTGGCGGGTCATTTTGGATGAGGCGCATACGATTAAGAATGTGAATGCTCAACAAAGTCAAGCTGTCACTAACTTGAAGGCTAAGCGAAGGTGGGCTGTTACTGGAACACCAATCCAGAATGGCTCATTTGATTTGTTTTCTTTGATGGCATTCTTGAGATTTGAGCCTTTCTCAATTAAGAGCTACTGGCAAAGCTTGGTGCAGCGCCCGCTTGCTCAGGGTAACAAGATGGGGCTTTCACGCCTGCAGGTTTTGATGGCAACCATTTCTTTGCGGAGAACAAAAGACAAAGGACTGATTGGATTGCCACCTAAAACTATAGAGACTTGCTACGTGGAATTATCTGTTGAAGAACGTGAACTGTATGATGGGATGGAGAGAGATGCGAAGAGTGTATTGCGGAATTACATAGCTGCTGGTAGTATGATGCGGAATTATTCCACTGTACTTAGTATAATCTTACGACTGCGGCAAATCTGTACTGATTCGGCGTTATGCCCTTCTGATCTCAAGTCACTTCTTCCTTCCAACGATATTGAAGATGTCTCAAAGAACCCAGAGCTACTGAAAAAGATGGTTGAGGTGCTGCAAGACGGTGAAGATTTTGATTGTCCAATTTGCATTTCTCCACCAACCGATGTTGTTATTACTTGTTGTGCACACATCTTTTGCCAAGCTTGTATTCTGAAAACCCTTCAGCGCACAAAACCCTGCTGTCCTTTGTGTCGCCGTCCTCTATCACAGTCTGATCTGTTCTCAGCCCCTCAAACATCTTCTGATGATGACAACACAATATCCTCAAAAACAACCATGTCTTCAAAAGTTTCTACCCTCATAAAACTTCTTGTTGAATCAAGGAATCAAAACCCACTGATCAAATCAGTAGTGTTTTCACAATTTCGAAAGATGTTGCTACATCTTGAAGAGGTACTGAAAACAGCTGGTTTCAAGGTTTTGCGTTTAGATGGGTCTATGACCGCAAATAAAAGAGCTCAAGTAATCAAAGAGTTTGGGGTTGTAGGAGATGATGCGCCCACAGTTTTGCTTGCAAGTCTGAAGGCTTCAGGAACAGGGATAAATCTTACTGCTGCTAGTAAAGTCTATTTGTTGGAGCCATGGTGGAACCCAGCAGTTGAGGAACAAGCAATGGATCGCGTTCACCGGATTGGGCAGAAGGAGGATGTAAAGATTGTCAGATTGATTGCTCAAAACAGCATTGAAGAGAGGATATTAGAGTTACAGGAGAAAAAGAAGAAACTTGCAAAGGAAGCTTTCGGAAAGAAAGGTTCAAAAGATCGCAGAGATGTGGGTGCCGATGATCTTATTAGCCTAATGTCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

871

Amino Acids

96.78

Weight (kDa)

7.49

Isoelectric Point (pI)

42.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIRAN PF08797 40 - 131 2.2e-20 HIRAN domain
SNF2-rel_dom PF00176 213 - 587 3.9e-68 SNF2-related domain
zf-C3HC4_3 PF13920 626 - 672 9.4e-06 Zinc finger, C3HC4 type (RING finger)
Helicase_C PF00271 698 - 814 5.6e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05130
fragaria_vesca FvH4_5g29290
malus_domestica MD15G1139300.v1.1
prunus_persica Prupe.7G028900_v2.0.a1
pyrus_communis pycom520g00520
rosa_chinensis RchiOBHm_Chr7g0222151
rosa_laevigata RLG00000002088
rosa_multiflora Rmu_sc0009183.1_g000008
rosa_roxburghii Rroxscaffold_3G00237370
rosa_rugosa Rorug07G0205700
rosa_samantha Rh7BG336900 Rh7DG345000
rosa_wichuraiana Rw7G029390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1510
AccB1I GGYRCC 3 cut(s) 161, 636, 2582
AccI GTMKAC 1 cut(s) 1034
AccII CGCG 6 cut(s) 198, 276, 349, 351, 473, 2427
AclWI GGATC 1 cut(s) 2430
AcoI YGGCCR 2 cut(s) 172, 262
AcsI RAATTY 1 cut(s) 676
AcuI CTGAAG 3 cut(s) 1952, 2319, 2348
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 5 cut(s) 527, 1193, 1719, 1753, 2202
AfiI CCNNNNNNNGG 3 cut(s) 181, 776, 932
AflII CTTAAG 1 cut(s) 1184
AjnI CCWGG 5 cut(s) 189, 245, 381, 651, 1126
AjuI GAANNNNNNNTTGG 4 cut(s) 1879, 1911, 1938, 1970
Alw21I GWGCWC 2 cut(s) 1933, 2266
Alw26I GTCTC 2 cut(s) 1589, 1822
Alw44I GTGCAC 1 cut(s) 1929
AlwI GGATC 1 cut(s) 2430
AoxI GGCC 8 cut(s) 52, 172, 187, 262, 445, 649, 1124, 1241
ApaLI GTGCAC 1 cut(s) 1929
ApeKI GCWGC 7 cut(s) 59, 148, 451, 1474, 1685, 1858, 2360
ApoI RAATTY 1 cut(s) 676
ArsI GACNNNNNNTTYG 6 cut(s) 264, 296, 321, 353, 805, 837
AspLEI GCGC 8 cut(s) 278, 351, 353, 443, 1297, 1479, 1974, 2305
AspS9I GGNCC 4 cut(s) 53, 193, 1159, 1242
AsuC2I CCSGG 1 cut(s) 176
AsuHPI GGTGA 5 cut(s) 160, 511, 920, 1880, 2423
AsuII TTCGAA 1 cut(s) 2173
AvaII GGWCC 2 cut(s) 193, 1159
BaeGI GKGCMC 2 cut(s) 1076, 1933
BanI GGYRCC 3 cut(s) 161, 636, 2582
BanII GRGCYC 1 cut(s) 2266
BbsI GAAGAC 1 cut(s) 2079
Bbv12I GWGCWC 2 cut(s) 1933, 2266
BbvCI CCTCAGC 1 cut(s) 1176
BbvI GCAGC 7 cut(s) 46, 160, 463, 1486, 1672, 1845, 2347
BceAI ACGGC 4 cut(s) 263, 308, 454, 1986
BciT130I CCWGG 5 cut(s) 191, 247, 383, 653, 1128
BclI TGATCA 2 cut(s) 615, 2145
BcnI CCSGG 1 cut(s) 176
BcoDI GTCTC 2 cut(s) 1589, 1822
BfaI CTAG 4 cut(s) 870, 1109, 1122, 2364
BfmI CTRYAG 3 cut(s) 449, 1517, 1590
BfoI RGCGCY 2 cut(s) 444, 1480
BfrI CTTAAG 1 cut(s) 1184
BfuAI ACCTGC 1 cut(s) 1510
BlpI GCTNAGC 2 cut(s) 978, 1353
Bme1390I CCNGG 6 cut(s) 176, 191, 247, 383, 653, 1128
Bme18I GGWCC 2 cut(s) 193, 1159
BmgT120I GGNCC 4 cut(s) 53, 193, 1159, 1242
BmrFI CCNGG 6 cut(s) 176, 191, 247, 383, 653, 1128
BmrI ACTGGG 1 cut(s) 11
BmsI GCATC 4 cut(s) 792, 1645, 1689, 2290
BmuI ACTGGG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 2079
BplI GAGNNNNNCTC 2 cut(s) 1427, 1459
Bpu10I CCTNAGC 2 cut(s) 1176, 1488
Bpu1102I GCTNAGC 2 cut(s) 978, 1353
Bpu14I TTCGAA 1 cut(s) 2173
BpuEI CTTGAG 4 cut(s) 52, 1447, 1766, 2250
BpuMI CCSGG 1 cut(s) 176
BsaAI YACGTR 1 cut(s) 1606
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 4 cut(s) 354, 652, 983, 2387
BsaWI WCCGGW 4 cut(s) 763, 932, 1161, 2433
BsaXI ACNNNNNCTCC 4 cut(s) 401, 431, 2375, 2405
Bsc4I CCNNNNNNNGG 3 cut(s) 181, 776, 932
Bse118I RCCGGY 1 cut(s) 170
Bse1I ACTGG 3 cut(s) 17, 1378, 1463
Bse3DI GCAATG 2 cut(s) 1018, 2424
BseBI CCWGG 5 cut(s) 191, 247, 383, 653, 1128
BseDI CCNNGG 4 cut(s) 354, 652, 983, 2387
BseGI GGATG 6 cut(s) 544, 565, 919, 1294, 1650, 2458
BseLI CCNNNNNNNGG 3 cut(s) 181, 776, 932
BseMI GCAATG 2 cut(s) 1018, 2424
BseMII CTCAG 6 cut(s) 507, 969, 993, 1167, 1502, 2043
BseNI ACTGG 3 cut(s) 17, 1378, 1463
BsePI GCGCGC 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 1193
BseSI GKGCMC 2 cut(s) 1076, 1933
BseX3I CGGCCG 1 cut(s) 172
BseXI GCAGC 7 cut(s) 46, 160, 463, 1486, 1672, 1845, 2347
BseYI CCCAGC 2 cut(s) 1244, 2398
BsgI GTGCAG 1 cut(s) 1493
Bsh1236I CGCG 6 cut(s) 198, 276, 349, 351, 473, 2427
Bsh1285I CGRYCG 2 cut(s) 175, 764
BshFI GGCC 8 cut(s) 54, 174, 189, 264, 447, 651, 1126, 1243
BshNI GGYRCC 3 cut(s) 161, 636, 2582
BsiEI CGRYCG 2 cut(s) 175, 764
BsiHKAI GWGCWC 2 cut(s) 1933, 2266
BsiSI CCGG 7 cut(s) 159, 171, 175, 764, 933, 1162, 2434
BslFI GGGAC 2 cut(s) 323, 1172
BslI CCNNNNNNNGG 3 cut(s) 181, 776, 932
BsmAI GTCTC 2 cut(s) 1589, 1822
BsmFI GGGAC 2 cut(s) 323, 1172
BsmI GAATGC 3 cut(s) 150, 1321, 1421
BsnI GGCC 8 cut(s) 54, 174, 189, 264, 447, 651, 1126, 1243
Bsp119I TTCGAA 1 cut(s) 2173
Bsp1286I GDGCHC 3 cut(s) 1076, 1933, 2266
Bsp1720I GCTNAGC 2 cut(s) 978, 1353
Bsp19I CCATGG 1 cut(s) 2387
BspANI GGCC 8 cut(s) 54, 174, 189, 264, 447, 651, 1126, 1243
BspCNI CTCAG 6 cut(s) 508, 970, 994, 1168, 1501, 2042
BspFNI CGCG 6 cut(s) 198, 276, 349, 351, 473, 2427
BspMAI CTGCAG 2 cut(s) 453, 1521
BspMI ACCTGC 1 cut(s) 1510
BspPI GGATC 1 cut(s) 2430
BspT104I TTCGAA 1 cut(s) 2173
BspT107I GGYRCC 3 cut(s) 161, 636, 2582
BspTI CTTAAG 1 cut(s) 1184
BsrDI GCAATG 2 cut(s) 1018, 2424
BsrFI RCCGGY 1 cut(s) 170
BsrI ACTGG 3 cut(s) 17, 1378, 1463
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 4 cut(s) 354, 652, 983, 2387
BssHII GCGCGC 1 cut(s) 349
BssNI GRCGYC 1 cut(s) 309
BssT1I CCWWGG 3 cut(s) 354, 983, 2387
Bst2UI CCWGG 5 cut(s) 191, 247, 383, 653, 1128
Bst4CI ACNGT 9 cut(s) 535, 581, 866, 1217, 1635, 1717, 1868, 2016, 2311
Bst6I CTCTTC 6 cut(s) 32, 699, 704, 1655, 2190, 2487
BstACI GRCGYC 1 cut(s) 309
BstAFI CTTAAG 1 cut(s) 1184
BstBAI YACGTR 1 cut(s) 1606
BstBI TTCGAA 1 cut(s) 2173
BstC8I GCNNGC 8 cut(s) 351, 445, 449, 571, 1481, 1485, 1517, 2319
BstDEI CTNAG 9 cut(s) 516, 773, 978, 1002, 1176, 1353, 1488, 1721, 2029
BstDSI CCRYGG 1 cut(s) 2387
BstENI CCTNNNNNAGG 1 cut(s) 774
BstF5I GGATG 6 cut(s) 544, 565, 919, 1294, 1650, 2458
BstFNI CGCG 6 cut(s) 198, 276, 349, 351, 473, 2427
BstH2I RGCGCY 2 cut(s) 444, 1480
BstHHI GCGC 8 cut(s) 278, 351, 353, 443, 1297, 1479, 1974, 2305
BstMAI GTCTC 2 cut(s) 1589, 1822
BstMCI CGRYCG 2 cut(s) 175, 764
BstMWI GCNNNNNNNGC 8 cut(s) 195, 284, 293, 357, 598, 634, 1480, 2540
BstNI CCWGG 5 cut(s) 191, 247, 383, 653, 1128
BstNSI RCATGY 1 cut(s) 115
BstSCI CCNGG 6 cut(s) 174, 189, 245, 381, 651, 1126
BstSFI CTRYAG 3 cut(s) 449, 1517, 1590
BstSLI GKGCMC 2 cut(s) 1076, 1933
BstUI CGCG 6 cut(s) 198, 276, 349, 351, 473, 2427
BstV1I GCAGC 7 cut(s) 46, 160, 463, 1486, 1672, 1845, 2347
BstV2I GAAGAC 1 cut(s) 2079
BstZI CGGCCG 1 cut(s) 172
BsuRI GGCC 8 cut(s) 54, 174, 189, 264, 447, 651, 1126, 1243
BtgI CCRYGG 1 cut(s) 2387
BtgZI GCGATG 2 cut(s) 112, 506
BtsCI GGATG 6 cut(s) 544, 565, 919, 1294, 1650, 2458
BtsIMutI CAGTG 4 cut(s) 50, 871, 1713, 2141
BveI ACCTGC 1 cut(s) 1510
Cac8I GCNNGC 8 cut(s) 351, 445, 449, 571, 1481, 1485, 1517, 2319
CfoI GCGC 8 cut(s) 278, 351, 353, 443, 1297, 1479, 1974, 2305
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 4 cut(s) 53, 193, 1159, 1242
CseI GACGC 2 cut(s) 317, 479
Csp6I GTAC 5 cut(s) 526, 1192, 1718, 1752, 2201
CspCI CAANNNNNGTGG 2 cut(s) 1048, 1083
CviAII CATG 4 cut(s) 112, 1095, 2083, 2388
CviQI GTAC 5 cut(s) 526, 1192, 1718, 1752, 2201
DdeI CTNAG 9 cut(s) 516, 773, 978, 1002, 1176, 1353, 1488, 1721, 2029
EaeI YGGCCR 2 cut(s) 172, 262
EagI CGGCCG 1 cut(s) 172
Eam1104I CTCTTC 6 cut(s) 32, 699, 704, 1655, 2190, 2487
EarI CTCTTC 6 cut(s) 32, 699, 704, 1655, 2190, 2487
EciI GGCGGA 1 cut(s) 418
Ecl136II GAGCTC 1 cut(s) 2264
EclXI CGGCCG 1 cut(s) 172
Eco130I CCWWGG 3 cut(s) 354, 983, 2387
Eco147I AGGCCT 1 cut(s) 651
Eco24I GRGCYC 1 cut(s) 2266
Eco47I GGWCC 2 cut(s) 193, 1159
Eco52I CGGCCG 1 cut(s) 172
Eco53kI GAGCTC 1 cut(s) 2264
Eco57I CTGAAG 3 cut(s) 1952, 2319, 2348
EcoICRI GAGCTC 1 cut(s) 2264
EcoNI CCTNNNNNAGG 1 cut(s) 774
EcoO109I RGGNCCY 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 676
EcoRII CCWGG 5 cut(s) 189, 245, 381, 651, 1126
EcoT14I CCWWGG 3 cut(s) 354, 983, 2387
EcoT38I GRGCYC 1 cut(s) 2266
ErhI CCWWGG 3 cut(s) 354, 983, 2387
FaeI CATG 4 cut(s) 115, 1098, 2086, 2391
FaqI GGGAC 2 cut(s) 323, 1172
FatI CATG 4 cut(s) 111, 1094, 2082, 2387
FauI CCCGC 3 cut(s) 64, 1269, 1488
FbaI TGATCA 2 cut(s) 615, 2145
FblI GTMKAC 1 cut(s) 1034
FokI GGATG 6 cut(s) 551, 572, 926, 1301, 1657, 2465
FriOI GRGCYC 1 cut(s) 2266
FspBI CTAG 4 cut(s) 870, 1109, 1122, 2364
GlaI GCGC 8 cut(s) 277, 350, 352, 442, 1296, 1478, 1973, 2304
GsaI CCCAGC 2 cut(s) 1248, 2402
HaeII RGCGCY 2 cut(s) 444, 1480
HaeIII GGCC 8 cut(s) 54, 174, 189, 264, 447, 651, 1126, 1243
HapII CCGG 7 cut(s) 159, 171, 175, 764, 933, 1162, 2434
HgaI GACGC 2 cut(s) 317, 479
HhaI GCGC 8 cut(s) 278, 351, 353, 443, 1297, 1479, 1974, 2305
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 4 cut(s) 115, 1098, 2086, 2391
Hin6I GCGC 8 cut(s) 276, 349, 351, 441, 1295, 1477, 1972, 2303
HinP1I GCGC 8 cut(s) 276, 349, 351, 441, 1295, 1477, 1972, 2303
HincII GTYRAC 2 cut(s) 738, 1206
HindII GTYRAC 2 cut(s) 738, 1206
HindIII AAGCTT 3 cut(s) 1465, 1947, 2541
HpaI GTTAAC 1 cut(s) 1206
HpaII CCGG 7 cut(s) 159, 171, 175, 764, 933, 1162, 2434
HphI GGTGA 5 cut(s) 160, 511, 920, 1880, 2423
Hpy166II GTNNAC 8 cut(s) 388, 738, 1035, 1059, 1206, 1631, 1931, 2431
Hpy188III TCNNGA 6 cut(s) 11, 31, 1387, 1426, 2192, 2337
Hpy8I GTNNAC 8 cut(s) 388, 738, 1035, 1059, 1206, 1631, 1931, 2431
Hpy99I CGWCG 5 cut(s) 284, 311, 329, 410, 473
HpyCH4III ACNGT 9 cut(s) 535, 581, 866, 1217, 1635, 1717, 1868, 2016, 2311
HpyCH4IV ACGT 3 cut(s) 994, 1605, 1627
HpyF10VI GCNNNNNNNGC 8 cut(s) 195, 284, 293, 357, 598, 634, 1480, 2540
HpyF3I CTNAG 9 cut(s) 516, 773, 978, 1002, 1176, 1353, 1488, 1721, 2029
HpySE526I ACGT 3 cut(s) 994, 1605, 1627
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 4 cut(s) 115, 1098, 2086, 2391
HspAI GCGC 8 cut(s) 276, 349, 351, 441, 1295, 1477, 1972, 2303
Ksp22I TGATCA 2 cut(s) 615, 2145
KspAI GTTAAC 1 cut(s) 1206
LmnI GCTCC 7 cut(s) 589, 598, 625, 766, 974, 1180, 2383
Lsp1109I GCAGC 7 cut(s) 46, 160, 463, 1486, 1672, 1845, 2347
LweI GCATC 4 cut(s) 792, 1645, 1689, 2290
MaeI CTAG 4 cut(s) 870, 1109, 1122, 2364
MaeII ACGT 3 cut(s) 994, 1605, 1627
MaeIII GTNAC 6 cut(s) 1099, 1336, 1369, 1493, 1785, 2508
MhlI GDGCHC 3 cut(s) 1076, 1933, 2266
MluCI AATT 8 cut(s) 676, 742, 1446, 1610, 1675, 1705, 1887, 2168
MlyI GAGTC 4 cut(s) 71, 243, 808, 1159
MmeI TCCRAC 7 cut(s) 121, 126, 246, 567, 603, 1824, 2361
MseI TTAA 6 cut(s) 369, 1185, 1205, 1257, 1305, 1449
MslI CAYNNNNRTG 1 cut(s) 110
MspA1I CMGCKG 3 cut(s) 59, 454, 2213
MspCI CTTAAG 1 cut(s) 1184
MspI CCGG 7 cut(s) 159, 171, 175, 764, 933, 1162, 2434
MspR9I CCNGG 6 cut(s) 176, 191, 247, 383, 653, 1128
Mva1269I GAATGC 3 cut(s) 150, 1321, 1421
MvaI CCWGG 5 cut(s) 191, 247, 383, 653, 1128
MvnI CGCG 6 cut(s) 198, 276, 349, 351, 473, 2427
MwoI GCNNNNNNNGC 8 cut(s) 195, 284, 293, 357, 598, 634, 1480, 2540
NciI CCSGG 1 cut(s) 176
NcoI CCATGG 1 cut(s) 2387
NlaIII CATG 4 cut(s) 115, 1098, 2086, 2391
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 2 cut(s) 1336, 1785
NspI RCATGY 1 cut(s) 115
NspV TTCGAA 1 cut(s) 2173
PauI GCGCGC 1 cut(s) 349
PceI AGGCCT 1 cut(s) 651
PcsI WCGNNNNNNNCGW 3 cut(s) 267, 276, 333
PctI GAATGC 3 cut(s) 150, 1321, 1421
PfeI GAWTC 7 cut(s) 218, 333, 373, 402, 1757, 2123, 2131
PleI GAGTC 4 cut(s) 71, 242, 808, 1159
PpsI GAGTC 4 cut(s) 71, 242, 808, 1159
Ppu21I YACGTR 1 cut(s) 1606
Psp124BI GAGCTC 1 cut(s) 2266
Psp6I CCWGG 5 cut(s) 189, 245, 381, 651, 1126
PspFI CCCAGC 2 cut(s) 1244, 2398
PspGI CCWGG 5 cut(s) 189, 245, 381, 651, 1126
PspPI GGNCC 4 cut(s) 53, 193, 1159, 1242
PstI CTGCAG 2 cut(s) 453, 1521
PteI GCGCGC 1 cut(s) 349
PvuII CAGCTG 2 cut(s) 454, 2213
RsaI GTAC 5 cut(s) 527, 1193, 1719, 1753, 2202
RsaNI GTAC 5 cut(s) 526, 1192, 1718, 1752, 2201
RseI CAYNNNNRTG 1 cut(s) 110
SacI GAGCTC 1 cut(s) 2266
SaqAI TTAA 6 cut(s) 369, 1185, 1205, 1257, 1305, 1449
Sau96I GGNCC 4 cut(s) 53, 193, 1159, 1242
SbfI CCTGCAGG 1 cut(s) 1521
SchI GAGTC 4 cut(s) 71, 243, 808, 1159
ScrFI CCNGG 6 cut(s) 176, 191, 247, 383, 653, 1128
SdaI CCTGCAGG 1 cut(s) 1521
SduI GDGCHC 3 cut(s) 1076, 1933, 2266
SfaNI GCATC 4 cut(s) 792, 1645, 1689, 2290
SfcI CTRYAG 3 cut(s) 449, 1517, 1590
SfuI TTCGAA 1 cut(s) 2173
SinI GGWCC 2 cut(s) 193, 1159
SmiMI CAYNNNNRTG 1 cut(s) 110
SmlI CTYRAG 5 cut(s) 31, 1184, 1426, 1781, 2265
SmoI CTYRAG 5 cut(s) 31, 1184, 1426, 1781, 2265
Sse8387I CCTGCAGG 1 cut(s) 1521
Sse9I AATT 8 cut(s) 676, 742, 1446, 1610, 1675, 1705, 1887, 2168
SseBI AGGCCT 1 cut(s) 651
SspMI CTAG 4 cut(s) 870, 1109, 1122, 2364
SstI GAGCTC 1 cut(s) 2266
StuI AGGCCT 1 cut(s) 651
StyD4I CCNGG 6 cut(s) 174, 189, 245, 381, 651, 1126
StyI CCWWGG 3 cut(s) 354, 983, 2387
TaaI ACNGT 9 cut(s) 535, 581, 866, 1217, 1635, 1717, 1868, 2016, 2311
TaiI ACGT 3 cut(s) 997, 1608, 1630
TaqI TCGA 7 cut(s) 39, 270, 306, 327, 405, 1168, 2173
TasI AATT 8 cut(s) 676, 742, 1446, 1610, 1675, 1705, 1887, 2168
TatI WGTACW 2 cut(s) 1717, 1751
TauI GCSGC 3 cut(s) 287, 290, 1744
TfiI GAWTC 7 cut(s) 218, 333, 373, 402, 1757, 2123, 2131
Tru1I TTAA 6 cut(s) 369, 1185, 1205, 1257, 1305, 1449
Tru9I TTAA 6 cut(s) 369, 1185, 1205, 1257, 1305, 1449
TscAI CASTG 4 cut(s) 50, 871, 1720, 2148
TseFI GTSAC 2 cut(s) 1336, 1785
TseI GCWGC 7 cut(s) 59, 148, 451, 1474, 1685, 1858, 2360
Tsp45I GTSAC 2 cut(s) 1336, 1785
TspDTI ATGAA 3 cut(s) 471, 819, 915
TspGWI ACGGA 2 cut(s) 409, 684
TspRI CASTG 4 cut(s) 50, 871, 1720, 2148
Vha464I CTTAAG 1 cut(s) 1184
VneI GTGCAC 1 cut(s) 1929
VpaK11BI GGWCC 2 cut(s) 193, 1159
XagI CCTNNNNNAGG 1 cut(s) 774
XapI RAATTY 1 cut(s) 676
XceI RCATGY 1 cut(s) 115
XmiI GTMKAC 1 cut(s) 1034
XspI CTAG 4 cut(s) 870, 1109, 1122, 2364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.