Rorug07G0205700

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0012371
Physical Location & Seq
Reverse (-)
18084966 .. 18101595
16630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0205700.1

Sequence Viewer

Length: 936 bp
ATGGCTGAGGGTCTGAAGCTGCCTATCATAGACTTGTCCTCACCGGACCGCACCTCCTCCGCCAGTTTAATCCGTCAGGCTTGCATAGAGTGTGGTTTCTTTTACTTGGTGAATCATGGTGTTGAGGAAGAGTTACTTGGCCAAGTGTTTGATCAGAGCAGTAAGTTTTTTTCACTTCCTTTGGAGGTCAAGTCCAAATTGGCGCGCAAACAAAACAGAGGCTACACTGCGCTCTTTGCTGAGAACCTTGACCCCAGTGCCAGCTCCAAAGGTGATTCAAAAGAAAGTTTTTATTTTGGTCCTTTTGAAGACGAGACTCAAAATAAGTTGAATCAATGGCCTCCAGAAGATATCCTTCCATCCTGGCGACCTACAATAGAATCCTACTATAAAAAAGTTCTTTCTGCTGGGAAAAGATTACTATCCCTGATTGCCCTGGCTTTGAACCTGGATGAGGATTTTTTTGAGAAAGTGGGGGATCTGAATAATCACACAGCAGTTCTTCGCCTTTTGCACTATCCAGGTCAACTGGGATCATCTGATGAAGAAGTACTTGGTGCTTCTGCTCATTCAGATTATGGGATGATCACACTCCTGGCATCCAATGGTGTCCCAGGACTTCAGGTTTGTAGGGAAAAATCTAAGCAACCACGGGTTTGGGAAGATGTTCTTCACATAGATGGAGCATTCGTTGTTAACATTGGGGATTTGATGGAGAGGTGGACTAATTGTTTATTCCAGTCAACGGTGCACAGAGTTATGCCAACAGGACAAGAACGCTACTCTGTGGCTTTCTTCTTAGACCCCAATGAAGAAACTCTGGTAGAATGCCTGGCAAGTTGTTGCAATGAATCATTGCCGCCAAGATTTCCTCCCATCCGCAGCGGGGACTACCTGAAAGAGCGGTTTAGACTTACTTATGGCTCATCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

311

Amino Acids

34.95

Weight (kDa)

5.08

Isoelectric Point (pI)

55.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 7 - 116 1.8e-31 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 167 - 269 1.2e-21 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012371)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G16700 AT1G79010
fragaria_vesca FvH4_5g29280
malus_domestica MD05G1066300.v1.1 MD10G1076300.v1.1
prunus_persica Prupe.8G096900_v2.0.a1 Prupe.8G096900_v2.0.a1
pyrus_communis pycom05g05750 pycom10g05970
rosa_chinensis RchiOBHm_Chr7g0222141
rosa_laevigata RLG00000002089
rosa_multiflora Rmu_sc0006951.1_g000002
rosa_roxburghii Rroxscaffold_3G00237380
rosa_rugosa Rorug07G0205700
rosa_samantha Rh7AG346900 Rh7BG336800 Rh7CG364200 Rh7DG344900
rosa_wichuraiana Rw7G029380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 904
AccII CGCG 1 cut(s) 205
AciI CCGC 6 cut(s) 49, 60, 860, 880, 885, 904
AclWI GGATC 2 cut(s) 486, 541
AcoI YGGCCR 1 cut(s) 139
AcuI CTGAAG 2 cut(s) 35, 605
AfaI GTAC 1 cut(s) 552
AfiI CCNNNNNNNGG 3 cut(s) 454, 745, 886
AgsI TTSAA 4 cut(s) 279, 308, 331, 445
AjnI CCWGG 7 cut(s) 362, 435, 447, 520, 594, 613, 831
AjuI GAANNNNNNNTTGG 4 cut(s) 120, 152, 537, 569
AluBI AGCT 2 cut(s) 19, 264
AluI AGCT 2 cut(s) 19, 264
Alw21I GWGCWC 1 cut(s) 753
Alw26I GTCTC 1 cut(s) 308
Alw44I GTGCAC 1 cut(s) 749
AlwI GGATC 2 cut(s) 486, 541
AoxI GGCC 2 cut(s) 139, 338
ApaLI GTGCAC 1 cut(s) 749
ApeKI GCWGC 2 cut(s) 19, 882
ArsI GACNNNNNNTTYG 2 cut(s) 609, 641
Asp700I GAANNNNTTC 1 cut(s) 666
AspLEI GCGC 3 cut(s) 205, 207, 232
AspS9I GGNCC 2 cut(s) 46, 299
AsuHPI GGTGA 3 cut(s) 33, 121, 284
AvaII GGWCC 2 cut(s) 46, 299
BaeGI GKGCMC 1 cut(s) 753
BalI TGGCCA 1 cut(s) 141
BbsI GAAGAC 1 cut(s) 315
Bbv12I GWGCWC 1 cut(s) 753
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 2 cut(s) 6, 894
BccI CCATC 4 cut(s) 367, 674, 706, 884
BciT130I CCWGG 7 cut(s) 364, 437, 449, 522, 596, 615, 833
BclI TGATCA 2 cut(s) 151, 585
BcoDI GTCTC 1 cut(s) 308
BisI GCNGC 3 cut(s) 20, 860, 883
BlsI GCNGC 3 cut(s) 21, 861, 884
BmcAI AGTACT 1 cut(s) 552
Bme1390I CCNGG 7 cut(s) 364, 437, 449, 522, 596, 615, 833
Bme18I GGWCC 2 cut(s) 46, 299
BmgT120I GGNCC 2 cut(s) 46, 299
BmrFI CCNGG 7 cut(s) 364, 437, 449, 522, 596, 615, 833
BmrI ACTGGG 2 cut(s) 249, 539
BmsI GCATC 1 cut(s) 608
BmuI ACTGGG 2 cut(s) 249, 539
BpiI GAAGAC 1 cut(s) 315
BpmI CTGGAG 1 cut(s) 327
Bpu10I CCTNAGC 1 cut(s) 6
BsaBI GATNNNNATC 1 cut(s) 421
BsaJI CCNNGG 3 cut(s) 435, 613, 650
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 6 cut(s) 38, 68, 176, 206, 675, 705
Bsc4I CCNNNNNNNGG 3 cut(s) 454, 745, 886
Bse1I ACTGG 4 cut(s) 63, 255, 534, 739
Bse3DI GCAATG 2 cut(s) 853, 854
Bse8I GATNNNNATC 1 cut(s) 421
BseBI CCWGG 7 cut(s) 364, 437, 449, 522, 596, 615, 833
BseDI CCNNGG 3 cut(s) 435, 613, 650
BseGI GGATG 5 cut(s) 359, 457, 588, 599, 876
BseJI GATNNNNATC 1 cut(s) 421
BseLI CCNNNNNNNGG 3 cut(s) 454, 745, 886
BseMI GCAATG 2 cut(s) 853, 854
BseMII CTCAG 1 cut(s) 231
BseNI ACTGG 4 cut(s) 63, 255, 534, 739
BsePI GCGCGC 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 753
BseXI GCAGC 2 cut(s) 6, 894
BseYI CCCAGC 1 cut(s) 407
Bsh1236I CGCG 1 cut(s) 205
BshFI GGCC 2 cut(s) 141, 340
BsiHKAI GWGCWC 1 cut(s) 753
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 2 cut(s) 596, 902
BslI CCNNNNNNNGG 3 cut(s) 454, 745, 886
BsmAI GTCTC 1 cut(s) 308
BsmFI GGGAC 2 cut(s) 596, 902
BsmI GAATGC 2 cut(s) 686, 833
BsnI GGCC 2 cut(s) 141, 340
Bsp1286I GDGCHC 1 cut(s) 753
Bsp143I GATC 4 cut(s) 151, 478, 533, 585
BspACI CCGC 6 cut(s) 49, 60, 860, 880, 885, 904
BspANI GGCC 2 cut(s) 141, 340
BspCNI CTCAG 1 cut(s) 232
BspFNI CGCG 1 cut(s) 205
BspPI GGATC 2 cut(s) 486, 541
BsrBI CCGCTC 1 cut(s) 904
BsrDI GCAATG 2 cut(s) 853, 854
BsrI ACTGG 4 cut(s) 63, 255, 534, 739
BssECI CCNNGG 3 cut(s) 435, 613, 650
BssHII GCGCGC 1 cut(s) 203
BssMI GATC 4 cut(s) 151, 478, 533, 585
Bst2UI CCWGG 7 cut(s) 364, 437, 449, 522, 596, 615, 833
Bst4CI ACNGT 1 cut(s) 748
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 3 cut(s) 82, 205, 262
BstDEI CTNAG 4 cut(s) 6, 240, 642, 799
BstDSI CCRYGG 1 cut(s) 650
BstENI CCTNNNNNAGG 1 cut(s) 452
BstF5I GGATG 5 cut(s) 359, 457, 588, 599, 876
BstFNI CGCG 1 cut(s) 205
BstHHI GCGC 3 cut(s) 205, 207, 232
BstKTI GATC 4 cut(s) 154, 481, 536, 588
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 4 cut(s) 151, 478, 533, 585
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 7 cut(s) 364, 437, 449, 522, 596, 615, 833
BstSCI CCNGG 7 cut(s) 362, 435, 447, 520, 594, 613, 831
BstSLI GKGCMC 1 cut(s) 753
BstUI CGCG 1 cut(s) 205
BstV1I GCAGC 2 cut(s) 6, 894
BstV2I GAAGAC 1 cut(s) 315
BstX2I RGATCY 1 cut(s) 478
BstXI CCANNNNNNTGG 1 cut(s) 657
BstYI RGATCY 1 cut(s) 478
BsuRI GGCC 2 cut(s) 141, 340
BtgI CCRYGG 1 cut(s) 650
BtsCI GGATG 5 cut(s) 359, 457, 588, 599, 876
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 2 cut(s) 225, 262
Cac8I GCNNGC 3 cut(s) 82, 205, 262
CfoI GCGC 3 cut(s) 205, 207, 232
Cfr13I GGNCC 2 cut(s) 46, 299
CpoI CGGWCCG 1 cut(s) 46
Csp6I GTAC 1 cut(s) 551
CspI CGGWCCG 1 cut(s) 46
CviAII CATG 1 cut(s) 116
CviQI GTAC 1 cut(s) 551
DdeI CTNAG 4 cut(s) 6, 240, 642, 799
DpnI GATC 4 cut(s) 153, 480, 535, 587
DpnII GATC 4 cut(s) 151, 478, 533, 585
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
EciI GGCGGA 1 cut(s) 49
Eco32I GATATC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 46, 299
Eco57I CTGAAG 2 cut(s) 35, 605
EcoNI CCTNNNNNAGG 1 cut(s) 452
EcoRII CCWGG 7 cut(s) 362, 435, 447, 520, 594, 613, 831
EcoRV GATATC 1 cut(s) 352
FaeI CATG 1 cut(s) 119
FaiI YATR 8 cut(s) 29, 86, 117, 390, 579, 677, 761, 921
FalI AAGNNNNNCTT 8 cut(s) 120, 152, 339, 371, 537, 569, 654, 686
FaqI GGGAC 2 cut(s) 596, 902
FatI CATG 1 cut(s) 115
FauI CCCGC 1 cut(s) 878
FbaI TGATCA 2 cut(s) 151, 585
Fnu4HI GCNGC 3 cut(s) 20, 860, 883
FokI GGATG 5 cut(s) 346, 464, 586, 595, 863
Fsp4HI GCNGC 3 cut(s) 20, 860, 883
GlaI GCGC 3 cut(s) 204, 206, 231
GluI GCNGC 3 cut(s) 20, 860, 883
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 1 cut(s) 327
HaeIII GGCC 2 cut(s) 141, 340
HapII CCGG 1 cut(s) 44
HhaI GCGC 3 cut(s) 205, 207, 232
Hin1II CATG 1 cut(s) 119
Hin6I GCGC 3 cut(s) 203, 205, 230
HinP1I GCGC 3 cut(s) 203, 205, 230
HincII GTYRAC 3 cut(s) 527, 697, 744
HindII GTYRAC 3 cut(s) 527, 697, 744
HinfI GANTC 6 cut(s) 112, 275, 316, 331, 380, 851
HpaI GTTAAC 1 cut(s) 697
HpaII CCGG 1 cut(s) 44
HphI GGTGA 3 cut(s) 33, 121, 284
Hpy166II GTNNAC 5 cut(s) 527, 697, 723, 744, 751
Hpy188I TCNGA 6 cut(s) 15, 156, 483, 541, 574, 931
Hpy188III TCNNGA 1 cut(s) 344
Hpy8I GTNNAC 5 cut(s) 527, 697, 723, 744, 751
HpyAV CCTTC 1 cut(s) 365
HpyCH4III ACNGT 1 cut(s) 748
HpyCH4V TGCA 4 cut(s) 84, 514, 751, 846
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 4 cut(s) 6, 240, 642, 799
Hsp92II CATG 1 cut(s) 119
HspAI GCGC 3 cut(s) 203, 205, 230
Ksp22I TGATCA 2 cut(s) 151, 585
KspAI GTTAAC 1 cut(s) 697
Kzo9I GATC 4 cut(s) 151, 478, 533, 585
LmnI GCTCC 2 cut(s) 269, 683
Lsp1109I GCAGC 2 cut(s) 6, 894
LweI GCATC 1 cut(s) 608
MaeIII GTNAC 1 cut(s) 132
MalI GATC 4 cut(s) 153, 480, 535, 587
MbiI CCGCTC 1 cut(s) 904
MboI GATC 4 cut(s) 151, 478, 533, 585
MboII GAAGA 9 cut(s) 140, 320, 359, 494, 557, 662, 674, 787, 824
MflI RGATCY 1 cut(s) 478
MhlI GDGCHC 1 cut(s) 753
MlsI TGGCCA 1 cut(s) 141
MluCI AATT 2 cut(s) 197, 727
MluNI TGGCCA 1 cut(s) 141
MlyI GAGTC 1 cut(s) 310
Mox20I TGGCCA 1 cut(s) 141
MroXI GAANNNNTTC 1 cut(s) 666
MscI TGGCCA 1 cut(s) 141
MseI TTAA 2 cut(s) 68, 696
MslI CAYNNNNRTG 2 cut(s) 678, 931
Msp20I TGGCCA 1 cut(s) 141
MspA1I CMGCKG 1 cut(s) 885
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 7 cut(s) 364, 437, 449, 522, 596, 615, 833
Mva1269I GAATGC 2 cut(s) 686, 833
MvaI CCWGG 7 cut(s) 364, 437, 449, 522, 596, 615, 833
MvnI CGCG 1 cut(s) 205
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeII GATC 4 cut(s) 151, 478, 533, 585
NlaIII CATG 1 cut(s) 119
PauI GCGCGC 1 cut(s) 203
PctI GAATGC 2 cut(s) 686, 833
PdmI GAANNNNTTC 1 cut(s) 666
PfeI GAWTC 5 cut(s) 112, 275, 331, 380, 851
PkrI GCNGC 3 cut(s) 21, 861, 884
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
Psp6I CCWGG 7 cut(s) 362, 435, 447, 520, 594, 613, 831
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 7 cut(s) 362, 435, 447, 520, 594, 613, 831
PspPI GGNCC 2 cut(s) 46, 299
PsuI RGATCY 1 cut(s) 478
PteI GCGCGC 1 cut(s) 203
RsaI GTAC 1 cut(s) 552
RsaNI GTAC 1 cut(s) 551
RseI CAYNNNNRTG 2 cut(s) 678, 931
Rsr2I CGGWCCG 1 cut(s) 46
RsrII CGGWCCG 1 cut(s) 46
SaqAI TTAA 2 cut(s) 68, 696
SatI GCNGC 3 cut(s) 20, 860, 883
Sau3AI GATC 4 cut(s) 151, 478, 533, 585
Sau96I GGNCC 2 cut(s) 46, 299
ScaI AGTACT 1 cut(s) 552
SchI GAGTC 1 cut(s) 310
ScrFI CCNGG 7 cut(s) 364, 437, 449, 522, 596, 615, 833
SduI GDGCHC 1 cut(s) 753
SfaNI GCATC 1 cut(s) 608
SinI GGWCC 2 cut(s) 46, 299
SmiMI CAYNNNNRTG 2 cut(s) 678, 931
Sse9I AATT 2 cut(s) 197, 727
SsiI CCGC 6 cut(s) 49, 60, 860, 880, 885, 904
StyD4I CCNGG 7 cut(s) 362, 435, 447, 520, 594, 613, 831
TaaI ACNGT 1 cut(s) 748
TasI AATT 2 cut(s) 197, 727
TatI WGTACW 1 cut(s) 550
TauI GCSGC 1 cut(s) 862
TfiI GAWTC 5 cut(s) 112, 275, 331, 380, 851
Tru1I TTAA 2 cut(s) 68, 696
Tru9I TTAA 2 cut(s) 68, 696
TscAI CASTG 2 cut(s) 232, 262
TseI GCWGC 2 cut(s) 19, 882
TspDTI ATGAA 3 cut(s) 558, 825, 864
TspGWI ACGGA 1 cut(s) 62
TspRI CASTG 2 cut(s) 232, 262
VneI GTGCAC 1 cut(s) 749
VpaK11BI GGWCC 2 cut(s) 46, 299
XagI CCTNNNNNAGG 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 666
ZrmI AGTACT 1 cut(s) 552
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.