Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0012371

Physical Location & Seq

Genomic Coordinates Reverse (-)

40678104 .. 40682111

Gene Structure 4008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G029380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTGCCTTTCTAGCTCAGAAATCCCTTCACGCTCTTCGTGCCAGACAGCTTCAGCTCGCTGTACCAGGGAGAGCACTGCAGGGATCCCACTTCTATGGAATGCGATCCAGCTCACATTGCTACTCAACTAAACTAGAGGATGAGGAAAGAGAGCAACTGGCAAAGGAGATGTCCAAGGACTGGAGTGCTGTTTTTGAGAGAAGCATCAACACACTATTTCTTACTGAAATGGTTCGAGGTCTGATGCTGACGCTCAAGTACTTTTTTGAGCAAAAAGTTACTATCAATTATCCATTCGAGAAGGGTCCTTTGAGTCCTCGTTTTCGTGGTGAACATGCCCTACGGCGTTATCCTACAGGAGAGGAGCGTTGCATTGCCTGCAAACTTTGTGAAGCTATTTGCCCAGCACAGGCAATTACAATTGAGGCTGAGGAACGAGAAGATGGTAGCCGTAGGACTACTAGGTATGACATTGACATGACAAAGTGCATCTACTGTGGGTTCTGTCAAGAAGCATGTCCAGTAGATGCTATTGTAGAAGGACCAAACTTTGAATTTTCAACAGAGACTCATGAGGAGCTTCTTTATGACAAAGAAAAGCTGCTCGAGAATGGAGACCGTTGGGAGACTGAGATTGCTGAGAACCTCAGATCTGAAAGCCTCTATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer4

Protein Analysis

224

Amino Acids

25.95

Weight (kDa)

5.42

Isoelectric Point (pI)

56.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer4_7	PF12838	124 - 178	1.3e-12	4Fe-4S dicluster domain
Fer4_9	PF13187	124 - 179	1.2e-07	4Fe-4S dicluster domain
Fer4	PF00037	158 - 179	2.4e-08	4Fe-4S binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16700 AT1G79010
fragaria_vesca	FvH4_5g29280
malus_domestica	MD05G1066300.v1.1 MD10G1076300.v1.1
prunus_persica	Prupe.8G096900_v2.0.a1 Prupe.8G096900_v2.0.a1
pyrus_communis	pycom05g05750 pycom10g05970
rosa_chinensis	RchiOBHm_Chr7g0222141
rosa_laevigata	RLG00000002089
rosa_multiflora	Rmu_sc0006951.1_g000002
rosa_roxburghii	Rroxscaffold_3G00237380
rosa_rugosa	Rorug07G0205700
rosa_samantha	Rh7AG346900 Rh7BG336800 Rh7CG364200 Rh7DG344900
rosa_wichuraiana	Rw7G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	183
AclWI	GGATC	3 cut(s)	81, 94, 102
AcsI	RAATTY	1 cut(s)	557
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	66, 263
AfiI	CCNNNNNNNGG	2 cut(s)	183, 412
AgsI	TTSAA	2 cut(s)	557, 564
AjnI	CCWGG	1 cut(s)	67
AluBI	AGCT	7 cut(s)	17, 52, 58, 114, 398, 583, 604
AluI	AGCT	7 cut(s)	17, 52, 58, 114, 398, 583, 604
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	3 cut(s)	563, 612, 623
AlwI	GGATC	3 cut(s)	81, 94, 102
Ama87I	CYCGRG	1 cut(s)	608
ApeKI	GCWGC	2 cut(s)	5, 604
ApoI	RAATTY	1 cut(s)	557
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
Asp700I	GAANNNNTTC	1 cut(s)	234
AspS9I	GGNCC	2 cut(s)	308, 545
AsuHPI	GGTGA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	608
AvaII	GGWCC	2 cut(s)	308, 545
BamHI	GGATCC	1 cut(s)	86
Bbv12I	GWGCWC	1 cut(s)	79
BbvCI	CCTCAGC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	591
BccI	CCATC	1 cut(s)	440
BceAI	ACGGC	2 cut(s)	362, 438
BciT130I	CCWGG	1 cut(s)	69
BcoDI	GTCTC	3 cut(s)	563, 612, 623
BfaI	CTAG	3 cut(s)	14, 137, 465
BfmI	CTRYAG	2 cut(s)	80, 357
BglII	AGATCT	1 cut(s)	653
BisI	GCNGC	2 cut(s)	6, 605
BlsI	GCNGC	2 cut(s)	7, 606
BmcAI	AGTACT	1 cut(s)	263
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	2 cut(s)	308, 545
BmeT110I	CYCGRG	1 cut(s)	608
BmgT120I	GGNCC	2 cut(s)	308, 545
BmiI	GGNNCC	2 cut(s)	88, 309
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	4 cut(s)	216, 237, 501, 520
BpmI	CTGGAG	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	432
BpuEI	CTTGAG	1 cut(s)	242
BsaI	GGTCTC	1 cut(s)	612
BsaJI	CCNNGG	2 cut(s)	68, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 412
Bse1I	ACTGG	3 cut(s)	165, 188, 524
Bse3DI	GCAATG	2 cut(s)	118, 375
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	2 cut(s)	68, 177
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	183, 412
BseMI	GCAATG	2 cut(s)	118, 375
BseMII	CTCAG	5 cut(s)	32, 423, 624, 633, 664
BseNI	ACTGG	3 cut(s)	165, 188, 524
BseRI	GAGGAG	2 cut(s)	380, 593
BseXI	GCAGC	1 cut(s)	591
BseYI	CCCAGC	1 cut(s)	406
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	608
BslI	CCNNNNNNNGG	2 cut(s)	183, 412
BsmAI	GTCTC	3 cut(s)	563, 612, 623
BsmI	GAATGC	1 cut(s)	108
Bso31I	GGTCTC	1 cut(s)	612
BsoBI	CYCGRG	1 cut(s)	608
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	3 cut(s)	86, 107, 653
BspCNI	CTCAG	5 cut(s)	31, 424, 625, 634, 663
BspHI	TCATGA	1 cut(s)	574
BspLI	GGNNCC	2 cut(s)	88, 309
BspMAI	CTGCAG	1 cut(s)	84
BspPI	GGATC	3 cut(s)	81, 94, 102
BspQI	GCTCTTC	1 cut(s)	42
BspTNI	GGTCTC	1 cut(s)	612
BsrDI	GCAATG	2 cut(s)	118, 375
BsrI	ACTGG	3 cut(s)	165, 188, 524
BssECI	CCNNGG	2 cut(s)	68, 177
BssMI	GATC	3 cut(s)	86, 107, 653
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	2 cut(s)	500, 623
Bst6I	CTCTTC	1 cut(s)	42
BstAPI	GCANNNNNTGC	1 cut(s)	381
BstC8I	GCNNGC	2 cut(s)	60, 382
BstDEI	CTNAG	5 cut(s)	18, 432, 633, 642, 650
BstF5I	GGATG	1 cut(s)	148
BstKTI	GATC	3 cut(s)	89, 110, 656
BstMAI	GTCTC	3 cut(s)	563, 612, 623
BstMBI	GATC	3 cut(s)	86, 107, 653
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 41, 120, 381
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	2 cut(s)	341, 522
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	2 cut(s)	80, 357
BstV1I	GCAGC	1 cut(s)	591
BstX2I	RGATCY	2 cut(s)	86, 653
BstXI	CCANNNNNNTGG	1 cut(s)	98
BstYI	RGATCY	2 cut(s)	86, 653
BtsCI	GGATG	1 cut(s)	148
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	1 cut(s)	77
Cac8I	GCNNGC	2 cut(s)	60, 382
CciI	TCATGA	1 cut(s)	574
Cfr13I	GGNCC	2 cut(s)	308, 545
CseI	GACGC	1 cut(s)	262
Csp6I	GTAC	2 cut(s)	65, 262
CviAII	CATG	4 cut(s)	338, 481, 519, 575
CviQI	GTAC	2 cut(s)	65, 262
DdeI	CTNAG	5 cut(s)	18, 432, 633, 642, 650
DpnI	GATC	3 cut(s)	88, 109, 655
DpnII	GATC	3 cut(s)	86, 107, 653
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	177
Eco31I	GGTCTC	1 cut(s)	612
Eco47I	GGWCC	2 cut(s)	308, 545
Eco57I	CTGAAG	1 cut(s)	38
Eco88I	CYCGRG	1 cut(s)	608
EcoO109I	RGGNCCY	1 cut(s)	308
EcoRII	CCWGG	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	4 cut(s)	341, 484, 522, 578
FaiI	YATR	7 cut(s)	99, 339, 471, 482, 520, 576, 591
FatI	CATG	4 cut(s)	337, 480, 518, 574
Fnu4HI	GCNGC	2 cut(s)	6, 605
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	2 cut(s)	6, 605
FspBI	CTAG	3 cut(s)	14, 137, 465
GluI	GCNGC	2 cut(s)	6, 605
GsaI	CCCAGC	1 cut(s)	410
GsuI	CTGGAG	1 cut(s)	205
HgaI	GACGC	1 cut(s)	262
Hin1II	CATG	4 cut(s)	341, 484, 522, 578
HinfI	GANTC	2 cut(s)	316, 571
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	335
Hpy188I	TCNGA	4 cut(s)	21, 246, 653, 658
Hpy188III	TCNNGA	4 cut(s)	301, 512, 575, 610
Hpy8I	GTNNAC	1 cut(s)	335
HpyAV	CCTTC	3 cut(s)	38, 298, 536
HpyCH4III	ACNGT	2 cut(s)	500, 623
HpyCH4V	TGCA	4 cut(s)	82, 375, 384, 492
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 41, 120, 381
HpyF3I	CTNAG	5 cut(s)	18, 432, 633, 642, 650
Hsp92II	CATG	4 cut(s)	341, 484, 522, 578
Kzo9I	GATC	3 cut(s)	86, 107, 653
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	2 cut(s)	367, 580
Lsp1109I	GCAGC	1 cut(s)	591
LweI	GCATC	4 cut(s)	216, 237, 501, 520
MaeI	CTAG	3 cut(s)	14, 137, 465
MaeIII	GTNAC	1 cut(s)	280
MalI	GATC	3 cut(s)	88, 109, 655
MboI	GATC	3 cut(s)	86, 107, 653
MboII	GAAGA	2 cut(s)	29, 455
MfeI	CAATTG	1 cut(s)	423
MflI	RGATCY	2 cut(s)	86, 653
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	4 cut(s)	289, 417, 423, 557
MlyI	GAGTC	2 cut(s)	325, 565
MroXI	GAANNNNTTC	1 cut(s)	234
MslI	CAYNNNNRTG	2 cut(s)	96, 479
MspR9I	CCNGG	1 cut(s)	69
MunI	CAATTG	1 cut(s)	423
Mva1269I	GAATGC	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	69
MwoI	GCNNNNNNNGC	4 cut(s)	14, 41, 120, 381
NdeII	GATC	3 cut(s)	86, 107, 653
NlaIII	CATG	4 cut(s)	341, 484, 522, 578
NlaIV	GGNNCC	2 cut(s)	88, 309
NspI	RCATGY	2 cut(s)	341, 522
PaeR7I	CTCGAG	1 cut(s)	608
PagI	TCATGA	1 cut(s)	574
PciSI	GCTCTTC	1 cut(s)	42
PctI	GAATGC	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	234
PflMI	CCANNNNNTGG	1 cut(s)	183
PkrI	GCNGC	2 cut(s)	7, 606
PleI	GAGTC	2 cut(s)	324, 565
PpsI	GAGTC	2 cut(s)	324, 565
PpuMI	RGGWCCY	1 cut(s)	308
Psp5II	RGGWCCY	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	406
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	2 cut(s)	88, 309
PspPI	GGNCC	2 cut(s)	308, 545
PspPPI	RGGWCCY	1 cut(s)	308
PsrI	GAACNNNNNNTAC	2 cut(s)	327, 359
PstI	CTGCAG	1 cut(s)	84
PsuI	RGATCY	2 cut(s)	86, 653
RsaI	GTAC	2 cut(s)	66, 263
RsaNI	GTAC	2 cut(s)	65, 262
RseI	CAYNNNNRTG	2 cut(s)	96, 479
SapI	GCTCTTC	1 cut(s)	42
SatI	GCNGC	2 cut(s)	6, 605
Sau3AI	GATC	3 cut(s)	86, 107, 653
Sau96I	GGNCC	2 cut(s)	308, 545
ScaI	AGTACT	1 cut(s)	263
SchI	GAGTC	2 cut(s)	325, 565
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	1 cut(s)	79
SfaNI	GCATC	4 cut(s)	216, 237, 501, 520
SfcI	CTRYAG	2 cut(s)	80, 357
Sfr274I	CTCGAG	1 cut(s)	608
SinI	GGWCC	2 cut(s)	308, 545
SlaI	CTCGAG	1 cut(s)	608
SmiMI	CAYNNNNRTG	2 cut(s)	96, 479
SmlI	CTYRAG	2 cut(s)	257, 608
SmoI	CTYRAG	2 cut(s)	257, 608
Sse9I	AATT	4 cut(s)	289, 417, 423, 557
SspMI	CTAG	3 cut(s)	14, 137, 465
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	500, 623
TaqI	TCGA	3 cut(s)	238, 300, 609
TasI	AATT	4 cut(s)	289, 417, 423, 557
TatI	WGTACW	1 cut(s)	261
TscAI	CASTG	1 cut(s)	84
TseI	GCWGC	2 cut(s)	5, 604
TspRI	CASTG	1 cut(s)	84
Van91I	CCANNNNNTGG	1 cut(s)	183
VpaK11BI	GGWCC	2 cut(s)	308, 545
XapI	RAATTY	1 cut(s)	557
XceI	RCATGY	2 cut(s)	341, 522
XhoI	CTCGAG	1 cut(s)	608
XmnI	GAANNNNTTC	1 cut(s)	234
XspI	CTAG	3 cut(s)	14, 137, 465
ZrmI	AGTACT	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.