Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0012371

Physical Location & Seq

Genomic Coordinates Reverse (-)

7203785 .. 7207252

Gene Structure 3468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g05750.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGTTACATATCATAATCCACTCACCTTAATTTTAGGATCATCAAACGGTTTGGATGTTTCACTTTGGTCATTCCCCGACAAAGCGCAGCGCTTAGGTGGCCATTCCCAATCGAACCCGAGTCGCGCAGAAGACGACCCATCGACTCAACCATCACCGGCCATGGCTGCGATCTTTGCTCGGAAATCTCTCCAGGCTCTCCGCGCCAGACAGCTCGTTGTACCAGGCCAAGCATTGCAGAGTTCTTCCTACTATGGACTGCGATCCAGTTCACAACACTTCTCAACCATAAAAGAGGATGAGGAAAGAGAGCAACTCGCAAAGGAGATTTCCAAGGACTGGAGTTCTGTTTTTGATCGAAGCATAAACACATTGTTCCTCACTGAAATGGTTCGAGGTCTGATGCTTACGCTTAAGTACTTTTTTGAGAAAAAAGTTACTATCAATTATCCTTTTGAGAAGGGCCCTTTGAGTCCTCGTTTTCGTGGTGAACATGCCCTACGGCGATATCCTACGGGAGAAGAGCGTTGCATTGCATGCAAGCTTTGTGAAGCTATCTGTCCTGCACAAGCAATAACAATTGAGGCTGAGGAACGAGAAGATGGTAGCCGTAGGACTACAAGGTATGACATTGACATGACAAAGTGCATCTACTGTGGATTCTGTCAAGAGGCATGTCCCGTTGATGCCATTGTCGAAGGACCAAACTTTGAATTCTCAACAGAGACTCATGAGGAGCTTCTTTACGACAAGGAAAAGCTGCTTGAGAATGGAGATCGTTGGGAGACCGAGATTGCTGAGAACCTCAGATCTGAAAGCCTTTACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer4

Protein Analysis

277

Amino Acids

31.46

Weight (kDa)

5.34

Isoelectric Point (pI)

62.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16700 AT1G79010
fragaria_vesca	FvH4_5g29280
malus_domestica	MD05G1066300.v1.1 MD10G1076300.v1.1
prunus_persica	Prupe.8G096900_v2.0.a1 Prupe.8G096900_v2.0.a1
pyrus_communis	pycom05g05750 pycom10g05970
rosa_chinensis	RchiOBHm_Chr7g0222141
rosa_laevigata	RLG00000002089
rosa_multiflora	Rmu_sc0006951.1_g000002
rosa_roxburghii	Rroxscaffold_3G00237380
rosa_rugosa	Rorug07G0205700
rosa_samantha	Rh7AG346900 Rh7BG336800 Rh7CG364200 Rh7DG344900
rosa_wichuraiana	Rw7G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	339
AccII	CGCG	2 cut(s)	126, 204
AciI	CCGC	2 cut(s)	202, 826
AclWI	GGATC	2 cut(s)	46, 258
AcoI	YGGCCR	2 cut(s)	100, 159
AcsI	RAATTY	1 cut(s)	713
AfaI	GTAC	2 cut(s)	222, 419
AfeI	AGCGCT	1 cut(s)	92
AfiI	CCNNNNNNNGG	1 cut(s)	339
AflII	CTTAAG	1 cut(s)	413
AgsI	TTSAA	1 cut(s)	713
AjnI	CCWGG	2 cut(s)	192, 223
AluBI	AGCT	5 cut(s)	214, 544, 554, 739, 760
AluI	AGCT	5 cut(s)	214, 544, 554, 739, 760
Alw26I	GTCTC	2 cut(s)	719, 779
AlwI	GGATC	2 cut(s)	46, 258
Ama87I	CYCGRG	1 cut(s)	118
Aor51HI	AGCGCT	1 cut(s)	92
AoxI	GGCC	4 cut(s)	100, 159, 226, 463
ApaI	GGGCCC	1 cut(s)	467
ApeKI	GCWGC	3 cut(s)	88, 167, 760
ApoI	RAATTY	1 cut(s)	713
Asp700I	GAANNNNTTC	1 cut(s)	390
AspLEI	GCGC	4 cut(s)	88, 93, 128, 206
AspS9I	GGNCC	3 cut(s)	463, 464, 701
AsuHPI	GGTGA	3 cut(s)	16, 147, 500
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	701
BaeGI	GKGCMC	1 cut(s)	467
BalI	TGGCCA	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	467
BbsI	GAAGAC	1 cut(s)	138
BbvCI	CCTCAGC	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	100, 154, 747
BccI	CCATC	3 cut(s)	148, 160, 596
BceAI	ACGGC	2 cut(s)	518, 594
BciT130I	CCWGG	2 cut(s)	194, 225
BcoDI	GTCTC	2 cut(s)	719, 779
BfoI	RGCGCY	1 cut(s)	94
BfrI	CTTAAG	1 cut(s)	413
BglII	AGATCT	1 cut(s)	809
BisI	GCNGC	3 cut(s)	89, 168, 761
BlsI	GCNGC	3 cut(s)	90, 169, 762
BmcAI	AGTACT	1 cut(s)	419
Bme1390I	CCNGG	2 cut(s)	194, 225
Bme18I	GGWCC	1 cut(s)	701
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	3 cut(s)	463, 464, 701
BmiI	GGNNCC	1 cut(s)	465
BmrFI	CCNGG	2 cut(s)	194, 225
BmsI	GCATC	3 cut(s)	393, 657, 676
BpiI	GAAGAC	1 cut(s)	138
BplI	GAGNNNNNCTC	2 cut(s)	300, 332
BpmI	CTGGAG	2 cut(s)	176, 361
Bpu10I	CCTNAGC	2 cut(s)	94, 588
BpuEI	CTTGAG	1 cut(s)	785
BsaI	GGTCTC	1 cut(s)	779
BsaJI	CCNNGG	2 cut(s)	162, 333
Bsc4I	CCNNNNNNNGG	1 cut(s)	339
Bse118I	RCCGGY	1 cut(s)	157
Bse1I	ACTGG	2 cut(s)	267, 344
Bse3DI	GCAATG	2 cut(s)	233, 531
BseBI	CCWGG	2 cut(s)	194, 225
BseDI	CCNNGG	2 cut(s)	162, 333
BseGI	GGATG	2 cut(s)	61, 304
BseLI	CCNNNNNNNGG	1 cut(s)	339
BseMI	GCAATG	2 cut(s)	233, 531
BseMII	CTCAG	3 cut(s)	579, 789, 820
BseNI	ACTGG	2 cut(s)	267, 344
BseRI	GAGGAG	1 cut(s)	749
BseSI	GKGCMC	1 cut(s)	467
BseXI	GCAGC	3 cut(s)	100, 154, 747
BsgI	GTGCAG	1 cut(s)	549
Bsh1236I	CGCG	2 cut(s)	126, 204
BshFI	GGCC	4 cut(s)	102, 161, 228, 465
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	1 cut(s)	158
BslFI	GGGAC	1 cut(s)	663
BslI	CCNNNNNNNGG	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	719, 779
BsmFI	GGGAC	1 cut(s)	663
BsnI	GGCC	4 cut(s)	102, 161, 228, 465
Bso31I	GGTCTC	1 cut(s)	779
BsoBI	CYCGRG	1 cut(s)	118
Bsp120I	GGGCCC	1 cut(s)	463
Bsp1286I	GDGCHC	1 cut(s)	467
Bsp143I	GATC	6 cut(s)	38, 171, 263, 355, 775, 809
Bsp19I	CCATGG	1 cut(s)	162
BspACI	CCGC	2 cut(s)	202, 826
BspANI	GGCC	4 cut(s)	102, 161, 228, 465
BspCNI	CTCAG	3 cut(s)	580, 790, 819
BspFNI	CGCG	2 cut(s)	126, 204
BspHI	TCATGA	1 cut(s)	730
BspLI	GGNNCC	1 cut(s)	465
BspPI	GGATC	2 cut(s)	46, 258
BspQI	GCTCTTC	1 cut(s)	516
BspTI	CTTAAG	1 cut(s)	413
BspTNI	GGTCTC	1 cut(s)	779
BsrDI	GCAATG	2 cut(s)	233, 531
BsrFI	RCCGGY	1 cut(s)	157
BsrI	ACTGG	2 cut(s)	267, 344
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	2 cut(s)	162, 333
BssMI	GATC	6 cut(s)	38, 171, 263, 355, 775, 809
BssT1I	CCWWGG	2 cut(s)	162, 333
Bst2UI	CCWGG	2 cut(s)	194, 225
Bst4CI	ACNGT	2 cut(s)	50, 656
Bst6I	CTCTTC	1 cut(s)	516
BstAFI	CTTAAG	1 cut(s)	413
BstAPI	GCANNNNNTGC	1 cut(s)	537
BstC8I	GCNNGC	2 cut(s)	538, 542
BstDEI	CTNAG	4 cut(s)	94, 588, 798, 806
BstDSI	CCRYGG	1 cut(s)	162
BstF5I	GGATG	2 cut(s)	61, 304
BstFNI	CGCG	2 cut(s)	126, 204
BstH2I	RGCGCY	1 cut(s)	94
BstHHI	GCGC	4 cut(s)	88, 93, 128, 206
BstKTI	GATC	6 cut(s)	41, 174, 266, 358, 778, 812
BstMAI	GTCTC	2 cut(s)	719, 779
BstMBI	GATC	6 cut(s)	38, 171, 263, 355, 775, 809
BstMWI	GCNNNNNNNGC	6 cut(s)	99, 167, 176, 203, 537, 825
BstNI	CCWGG	2 cut(s)	194, 225
BstNSI	RCATGY	3 cut(s)	497, 540, 678
BstSCI	CCNGG	2 cut(s)	192, 223
BstSLI	GKGCMC	1 cut(s)	467
BstUI	CGCG	2 cut(s)	126, 204
BstV1I	GCAGC	3 cut(s)	100, 154, 747
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	1 cut(s)	809
BstYI	RGATCY	1 cut(s)	809
BsuRI	GGCC	4 cut(s)	102, 161, 228, 465
BtgI	CCRYGG	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	61, 304
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	538, 542
CciI	TCATGA	1 cut(s)	730
CfoI	GCGC	4 cut(s)	88, 93, 128, 206
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	3 cut(s)	463, 464, 701
Csp6I	GTAC	2 cut(s)	221, 418
CviAII	CATG	6 cut(s)	163, 494, 537, 637, 675, 731
CviQI	GTAC	2 cut(s)	221, 418
DdeI	CTNAG	4 cut(s)	94, 588, 798, 806
DpnI	GATC	6 cut(s)	40, 173, 265, 357, 777, 811
DpnII	GATC	6 cut(s)	38, 171, 263, 355, 775, 809
EaeI	YGGCCR	2 cut(s)	100, 159
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
Eco130I	CCWWGG	2 cut(s)	162, 333
Eco24I	GRGCYC	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	779
Eco32I	GATATC	1 cut(s)	509
Eco47I	GGWCC	1 cut(s)	701
Eco47III	AGCGCT	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	118
EcoO109I	RGGNCCY	2 cut(s)	463, 464
EcoRI	GAATTC	1 cut(s)	713
EcoRII	CCWGG	2 cut(s)	192, 223
EcoRV	GATATC	1 cut(s)	509
EcoT14I	CCWWGG	2 cut(s)	162, 333
EcoT38I	GRGCYC	1 cut(s)	467
ErhI	CCWWGG	2 cut(s)	162, 333
FaeI	CATG	6 cut(s)	166, 497, 540, 640, 678, 734
FaqI	GGGAC	1 cut(s)	663
FatI	CATG	6 cut(s)	162, 493, 536, 636, 674, 730
Fnu4HI	GCNGC	3 cut(s)	89, 168, 761
FokI	GGATG	2 cut(s)	68, 311
FriOI	GRGCYC	1 cut(s)	467
Fsp4HI	GCNGC	3 cut(s)	89, 168, 761
GlaI	GCGC	4 cut(s)	87, 92, 127, 205
GluI	GCNGC	3 cut(s)	89, 168, 761
GsuI	CTGGAG	2 cut(s)	176, 361
HaeII	RGCGCY	1 cut(s)	94
HaeIII	GGCC	4 cut(s)	102, 161, 228, 465
HapII	CCGG	1 cut(s)	158
HhaI	GCGC	4 cut(s)	88, 93, 128, 206
Hin1II	CATG	6 cut(s)	166, 497, 540, 640, 678, 734
Hin6I	GCGC	4 cut(s)	86, 91, 126, 204
HinP1I	GCGC	4 cut(s)	86, 91, 126, 204
HindIII	AAGCTT	1 cut(s)	542
HinfI	GANTC	5 cut(s)	121, 145, 472, 660, 727
HpaII	CCGG	1 cut(s)	158
HphI	GGTGA	3 cut(s)	16, 147, 500
Hpy166II	GTNNAC	2 cut(s)	272, 491
Hpy188I	TCNGA	4 cut(s)	183, 402, 809, 814
Hpy188III	TCNNGA	2 cut(s)	668, 731
Hpy8I	GTNNAC	2 cut(s)	272, 491
HpyAV	CCTTC	2 cut(s)	454, 692
HpyCH4III	ACNGT	2 cut(s)	50, 656
HpyCH4V	TGCA	6 cut(s)	238, 531, 536, 540, 566, 648
HpyF10VI	GCNNNNNNNGC	6 cut(s)	99, 167, 176, 203, 537, 825
HpyF3I	CTNAG	4 cut(s)	94, 588, 798, 806
Hsp92II	CATG	6 cut(s)	166, 497, 540, 640, 678, 734
HspAI	GCGC	4 cut(s)	86, 91, 126, 204
Kzo9I	GATC	6 cut(s)	38, 171, 263, 355, 775, 809
LguI	GCTCTTC	1 cut(s)	516
LmnI	GCTCC	1 cut(s)	736
LpnPI	CCDG	9 cut(s)	171, 179, 206, 210, 220, 237, 280, 325, 576
Lsp1109I	GCAGC	3 cut(s)	100, 154, 747
LweI	GCATC	3 cut(s)	393, 657, 676
MaeIII	GTNAC	2 cut(s)	4, 436
MalI	GATC	6 cut(s)	40, 173, 265, 357, 777, 811
MboI	GATC	6 cut(s)	38, 171, 263, 355, 775, 809
MboII	GAAGA	4 cut(s)	143, 237, 533, 611
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	1 cut(s)	809
MhlI	GDGCHC	1 cut(s)	467
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	4 cut(s)	30, 445, 579, 713
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	4 cut(s)	130, 139, 481, 721
Mox20I	TGGCCA	1 cut(s)	102
MroXI	GAANNNNTTC	1 cut(s)	390
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	2 cut(s)	29, 414
MslI	CAYNNNNRTG	2 cut(s)	386, 635
Msp20I	TGGCCA	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	828
MspCI	CTTAAG	1 cut(s)	413
MspI	CCGG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	194, 225
MteI	GCGCNGCGC	1 cut(s)	89
MunI	CAATTG	1 cut(s)	579
MvaI	CCWGG	2 cut(s)	194, 225
MvnI	CGCG	2 cut(s)	126, 204
MwoI	GCNNNNNNNGC	6 cut(s)	99, 167, 176, 203, 537, 825
NcoI	CCATGG	1 cut(s)	162
NdeII	GATC	6 cut(s)	38, 171, 263, 355, 775, 809
NlaIII	CATG	6 cut(s)	166, 497, 540, 640, 678, 734
NlaIV	GGNNCC	1 cut(s)	465
NspI	RCATGY	3 cut(s)	497, 540, 678
PaeI	GCATGC	1 cut(s)	540
PagI	TCATGA	1 cut(s)	730
PciSI	GCTCTTC	1 cut(s)	516
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	660
PflMI	CCANNNNNTGG	1 cut(s)	339
PkrI	GCNGC	3 cut(s)	90, 169, 762
PleI	GAGTC	4 cut(s)	129, 139, 480, 721
PpsI	GAGTC	4 cut(s)	129, 139, 480, 721
Psp6I	CCWGG	2 cut(s)	192, 223
PspGI	CCWGG	2 cut(s)	192, 223
PspN4I	GGNNCC	1 cut(s)	465
PspOMI	GGGCCC	1 cut(s)	463
PspPI	GGNCC	3 cut(s)	463, 464, 701
PsrI	GAACNNNNNNTAC	2 cut(s)	483, 515
PsuI	RGATCY	1 cut(s)	809
RsaI	GTAC	2 cut(s)	222, 419
RsaNI	GTAC	2 cut(s)	221, 418
RseI	CAYNNNNRTG	2 cut(s)	386, 635
SapI	GCTCTTC	1 cut(s)	516
SaqAI	TTAA	2 cut(s)	29, 414
SatI	GCNGC	3 cut(s)	89, 168, 761
Sau3AI	GATC	6 cut(s)	38, 171, 263, 355, 775, 809
Sau96I	GGNCC	3 cut(s)	463, 464, 701
ScaI	AGTACT	1 cut(s)	419
SchI	GAGTC	4 cut(s)	130, 139, 481, 721
ScrFI	CCNGG	2 cut(s)	194, 225
SduI	GDGCHC	1 cut(s)	467
SfaNI	GCATC	3 cut(s)	393, 657, 676
SinI	GGWCC	1 cut(s)	701
SmiMI	CAYNNNNRTG	2 cut(s)	386, 635
SmlI	CTYRAG	2 cut(s)	413, 764
SmoI	CTYRAG	2 cut(s)	413, 764
SphI	GCATGC	1 cut(s)	540
Sse9I	AATT	4 cut(s)	30, 445, 579, 713
SsiI	CCGC	2 cut(s)	202, 826
StyD4I	CCNGG	2 cut(s)	192, 223
StyI	CCWWGG	2 cut(s)	162, 333
TaaI	ACNGT	2 cut(s)	50, 656
TaqI	TCGA	5 cut(s)	113, 143, 358, 394, 696
TaqII	GACCGA	1 cut(s)	803
TasI	AATT	4 cut(s)	30, 445, 579, 713
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	1 cut(s)	660
Tru1I	TTAA	2 cut(s)	29, 414
Tru9I	TTAA	2 cut(s)	29, 414
TscAI	CASTG	1 cut(s)	388
TseI	GCWGC	3 cut(s)	88, 167, 760
TspRI	CASTG	1 cut(s)	388
Van91I	CCANNNNNTGG	1 cut(s)	339
Vha464I	CTTAAG	1 cut(s)	413
VpaK11BI	GGWCC	1 cut(s)	701
XapI	RAATTY	1 cut(s)	713
XceI	RCATGY	3 cut(s)	497, 540, 678
XmnI	GAANNNNTTC	1 cut(s)	390
ZrmI	AGTACT	1 cut(s)	419

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.