Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0012371

Physical Location & Seq

Genomic Coordinates Reverse (-)

43810993 .. 43815722

Gene Structure 4730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG346900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGCCAACTGCAGAGGATGAGGAAAGAGAGCAACTGGCAAAGGAGATGTCCAAGGACTGGAGTGCTGTTTTTGAGAGAAGCATCAACACACTATTTCTTACTGAAATGGTTCGAGGTCTGATGCTAACGCTCAAGTACTTTTTTGAGCAAAAAGTTACTATCAATTATCCATTTGAGAAGGGTCCTTTGAGTCCTCGTTTTCGTGGTGAACATGCCTTGCGGCGTTATCCTACGGGAGAAGAGCGTTGCATTGCCTGCAAACTTTGTGAAGCTATTTGCCCAGCACAGGCAATTACAATTGAGGCTGAGGAACGAGAAGATGGTAGCCGTAGGACTACTAGGTATGACATTGACATGACAAAGTGCATCTACTGTGGGTTCTGTCAAGAGGCATGTCCAGTAGATGCTATTGTAGAAGGACCAAACTTTGAATTTTCAACAGAGACTCATGAGGAGCTTCTTTATGACAAAGAAAAGCTGCTCGAGAATGGAGACCGTTGGGAGACTGAGATTGCTGAGAACCTCAGATCTGAAAGCCTCTATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer4

Protein Analysis

182

Amino Acids

21.28

Weight (kDa)

4.75

Isoelectric Point (pI)

57.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer4_7	PF12838	82 - 136	8.8e-13	4Fe-4S dicluster domain
Fer4_9	PF13187	82 - 137	8.1e-08	4Fe-4S dicluster domain
Fer4	PF00037	116 - 137	1.8e-08	4Fe-4S binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0012371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16700 AT1G79010
fragaria_vesca	FvH4_5g29280
malus_domestica	MD05G1066300.v1.1 MD10G1076300.v1.1
prunus_persica	Prupe.8G096900_v2.0.a1 Prupe.8G096900_v2.0.a1
pyrus_communis	pycom05g05750 pycom10g05970
rosa_chinensis	RchiOBHm_Chr7g0222141
rosa_laevigata	RLG00000002089
rosa_multiflora	Rmu_sc0006951.1_g000002
rosa_roxburghii	Rroxscaffold_3G00237380
rosa_rugosa	Rorug07G0205700
rosa_samantha	Rh7AG346900 Rh7BG336800 Rh7CG364200 Rh7DG344900
rosa_wichuraiana	Rw7G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	57
AciI	CCGC	1 cut(s)	220
AcsI	RAATTY	1 cut(s)	431
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	2 cut(s)	57, 286
AgsI	TTSAA	2 cut(s)	431, 438
AluBI	AGCT	3 cut(s)	272, 457, 478
AluI	AGCT	3 cut(s)	272, 457, 478
Alw26I	GTCTC	3 cut(s)	437, 486, 497
Ama87I	CYCGRG	1 cut(s)	482
ApeKI	GCWGC	1 cut(s)	478
ApoI	RAATTY	1 cut(s)	431
ArsI	GACNNNNNNTTYG	2 cut(s)	32, 64
Asp700I	GAANNNNTTC	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	182, 419
AsuHPI	GGTGA	1 cut(s)	218
AvaI	CYCGRG	1 cut(s)	482
AvaII	GGWCC	2 cut(s)	182, 419
BbvCI	CCTCAGC	1 cut(s)	306
BbvI	GCAGC	1 cut(s)	465
BccI	CCATC	1 cut(s)	314
BceAI	ACGGC	1 cut(s)	312
BcoDI	GTCTC	3 cut(s)	437, 486, 497
BfaI	CTAG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	9
BglII	AGATCT	1 cut(s)	527
BisI	GCNGC	2 cut(s)	221, 479
BlsI	GCNGC	2 cut(s)	222, 480
BmcAI	AGTACT	1 cut(s)	137
Bme18I	GGWCC	2 cut(s)	182, 419
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	2 cut(s)	182, 419
BmiI	GGNNCC	1 cut(s)	183
BmsI	GCATC	4 cut(s)	90, 111, 375, 394
BpmI	CTGGAG	1 cut(s)	79
Bpu10I	CCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	486
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	57, 286
Bse1I	ACTGG	3 cut(s)	39, 62, 398
Bse3DI	GCAATG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	2 cut(s)	57, 286
BseMI	GCAATG	1 cut(s)	249
BseMII	CTCAG	4 cut(s)	297, 498, 507, 538
BseNI	ACTGG	3 cut(s)	39, 62, 398
BseRI	GAGGAG	1 cut(s)	467
BseXI	GCAGC	1 cut(s)	465
BseYI	CCCAGC	1 cut(s)	280
BsiHKCI	CYCGRG	1 cut(s)	482
BslI	CCNNNNNNNGG	2 cut(s)	57, 286
BsmAI	GTCTC	3 cut(s)	437, 486, 497
Bso31I	GGTCTC	1 cut(s)	486
BsoBI	CYCGRG	1 cut(s)	482
Bsp143I	GATC	1 cut(s)	527
BspACI	CCGC	1 cut(s)	220
BspCNI	CTCAG	4 cut(s)	298, 499, 508, 537
BspHI	TCATGA	1 cut(s)	448
BspLI	GGNNCC	1 cut(s)	183
BspMAI	CTGCAG	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	234
BspTNI	GGTCTC	1 cut(s)	486
BsrDI	GCAATG	1 cut(s)	249
BsrI	ACTGG	3 cut(s)	39, 62, 398
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	1 cut(s)	527
BssT1I	CCWWGG	1 cut(s)	51
Bst4CI	ACNGT	2 cut(s)	374, 497
Bst6I	CTCTTC	1 cut(s)	234
BstAPI	GCANNNNNTGC	1 cut(s)	255
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	4 cut(s)	306, 507, 516, 524
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	530
BstMAI	GTCTC	3 cut(s)	437, 486, 497
BstMBI	GATC	1 cut(s)	527
BstMWI	GCNNNNNNNGC	1 cut(s)	255
BstNSI	RCATGY	2 cut(s)	215, 396
BstSFI	CTRYAG	1 cut(s)	9
BstV1I	GCAGC	1 cut(s)	465
BstX2I	RGATCY	1 cut(s)	527
BstYI	RGATCY	1 cut(s)	527
BtsCI	GGATG	1 cut(s)	22
Cac8I	GCNNGC	1 cut(s)	256
CciI	TCATGA	1 cut(s)	448
Cfr13I	GGNCC	2 cut(s)	182, 419
Csp6I	GTAC	1 cut(s)	136
CviAII	CATG	4 cut(s)	212, 355, 393, 449
CviJI	RGCY	6 cut(s)	272, 305, 327, 457, 478, 537
CviKI_1	RGCY	6 cut(s)	272, 305, 327, 457, 478, 537
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	4 cut(s)	306, 507, 516, 524
DpnI	GATC	1 cut(s)	529
DpnII	GATC	1 cut(s)	527
Eam1104I	CTCTTC	1 cut(s)	234
EarI	CTCTTC	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	486
Eco47I	GGWCC	2 cut(s)	182, 419
Eco88I	CYCGRG	1 cut(s)	482
EcoO109I	RGGNCCY	1 cut(s)	182
EcoT14I	CCWWGG	1 cut(s)	51
ErhI	CCWWGG	1 cut(s)	51
FaeI	CATG	4 cut(s)	215, 358, 396, 452
FaiI	YATR	6 cut(s)	213, 345, 356, 394, 450, 465
FatI	CATG	4 cut(s)	211, 354, 392, 448
Fnu4HI	GCNGC	2 cut(s)	221, 479
FokI	GGATG	1 cut(s)	29
Fsp4HI	GCNGC	2 cut(s)	221, 479
FspBI	CTAG	1 cut(s)	339
GluI	GCNGC	2 cut(s)	221, 479
GsaI	CCCAGC	1 cut(s)	284
GsuI	CTGGAG	1 cut(s)	79
Hin1II	CATG	4 cut(s)	215, 358, 396, 452
HinfI	GANTC	2 cut(s)	190, 445
HphI	GGTGA	1 cut(s)	218
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	3 cut(s)	120, 527, 532
Hpy188III	TCNNGA	3 cut(s)	386, 449, 484
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	172, 410
HpyCH4III	ACNGT	2 cut(s)	374, 497
HpyCH4V	TGCA	4 cut(s)	11, 249, 258, 366
HpyF10VI	GCNNNNNNNGC	1 cut(s)	255
HpyF3I	CTNAG	4 cut(s)	306, 507, 516, 524
Hsp92II	CATG	4 cut(s)	215, 358, 396, 452
Kzo9I	GATC	1 cut(s)	527
LguI	GCTCTTC	1 cut(s)	234
LmnI	GCTCC	1 cut(s)	454
LpnPI	CCDG	6 cut(s)	20, 43, 268, 272, 294, 411
Lsp1109I	GCAGC	1 cut(s)	465
LweI	GCATC	4 cut(s)	90, 111, 375, 394
MaeI	CTAG	1 cut(s)	339
MaeIII	GTNAC	1 cut(s)	154
MalI	GATC	1 cut(s)	529
MboI	GATC	1 cut(s)	527
MboII	GAAGA	2 cut(s)	251, 329
MfeI	CAATTG	1 cut(s)	297
MflI	RGATCY	1 cut(s)	527
MluCI	AATT	4 cut(s)	163, 291, 297, 431
MlyI	GAGTC	2 cut(s)	199, 439
MroXI	GAANNNNTTC	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	353
MunI	CAATTG	1 cut(s)	297
MwoI	GCNNNNNNNGC	1 cut(s)	255
NdeII	GATC	1 cut(s)	527
NlaIII	CATG	4 cut(s)	215, 358, 396, 452
NlaIV	GGNNCC	1 cut(s)	183
NspI	RCATGY	2 cut(s)	215, 396
PaeR7I	CTCGAG	1 cut(s)	482
PagI	TCATGA	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	234
PdmI	GAANNNNTTC	1 cut(s)	108
PflMI	CCANNNNNTGG	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	222, 480
PleI	GAGTC	2 cut(s)	198, 439
PpsI	GAGTC	2 cut(s)	198, 439
PpuMI	RGGWCCY	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	280
PspN4I	GGNNCC	1 cut(s)	183
PspPI	GGNCC	2 cut(s)	182, 419
PspPPI	RGGWCCY	1 cut(s)	182
PstI	CTGCAG	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	527
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
RseI	CAYNNNNRTG	1 cut(s)	353
SapI	GCTCTTC	1 cut(s)	234
SatI	GCNGC	2 cut(s)	221, 479
Sau3AI	GATC	1 cut(s)	527
Sau96I	GGNCC	2 cut(s)	182, 419
ScaI	AGTACT	1 cut(s)	137
SchI	GAGTC	2 cut(s)	199, 439
SetI	ASST	6 cut(s)	118, 274, 344, 459, 480, 525
SfaNI	GCATC	4 cut(s)	90, 111, 375, 394
SfcI	CTRYAG	1 cut(s)	9
Sfr274I	CTCGAG	1 cut(s)	482
SinI	GGWCC	2 cut(s)	182, 419
SlaI	CTCGAG	1 cut(s)	482
SmiMI	CAYNNNNRTG	1 cut(s)	353
SmlI	CTYRAG	2 cut(s)	131, 482
SmoI	CTYRAG	2 cut(s)	131, 482
Sse9I	AATT	4 cut(s)	163, 291, 297, 431
SsiI	CCGC	1 cut(s)	220
SspMI	CTAG	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	51
TaaI	ACNGT	2 cut(s)	374, 497
TaqI	TCGA	2 cut(s)	112, 483
TasI	AATT	4 cut(s)	163, 291, 297, 431
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	223
TseI	GCWGC	1 cut(s)	478
Van91I	CCANNNNNTGG	1 cut(s)	57
VpaK11BI	GGWCC	2 cut(s)	182, 419
XapI	RAATTY	1 cut(s)	431
XceI	RCATGY	2 cut(s)	215, 396
XhoI	CTCGAG	1 cut(s)	482
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	1 cut(s)	339
ZrmI	AGTACT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.