Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0012371

Physical Location & Seq

Genomic Coordinates Forward (+)

24963098 .. 24967703

Gene Structure 4606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCTGCCTTTCTAGCTCGGAAATCCCTTCACGCTCTTCGTGCCAGACAGCTTCAGCTCGAGAGTTCAAATTCTCGATTATTGGGATTTAGGCTGCGCCTTGTATTGAGCAGTGGAGTTCCAGGATGTATGGACCTATTTCTTGCTGTACCAGGGAAAGCACTGCAGGGATCCCACTTCTATGGAATGCAATCCAGCTCACATTGCTACTCAACTAAACTAGAGGATGAGGAAAGAGAGCAACTGGCAAAGGAGATGTCCAAGGACTGGAGTGCTGTTTTTGAGAGAAGCATCAACACACTATTTCTTACTGAAATGGTTCGAGGTCTGATGCTGACGCTCAAGTACTTTTTTGAGCAAAAAGTTACTATCAATTATCCATTCGAGAAGGGTCCTTTGAGTCCTCGTTTTCGTGGTGAACATGCCCTACGGCGTTATCCTACAGGAGAAGAGCGTTGCATTGCCTGCAAACTTTGTGAAGCTATTTGCCCAGCACAGGCAATTACAATTGAGGCTGAGGAACGAGAAGATGGTAGCCGTAGGACTACTAGGTATGACATTGACATGACAAAGTGCATCTACTGTGGGTTCTGTCAAGAGGCATGTCCAGTAGATGCTATTGTAGAAGGACCAAACTTTGAATTTTCAACGGAGACTCATGAGGAGCTTCTTTATGACAAAGAAAAGCTGCTCGAGAATGGAGACCGTTGGGAGACTGAGATTGCTGAGAACCTCAGATCTGAAAGCCTCTATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer4

Protein Analysis

252

Amino Acids

28.97

Weight (kDa)

5.56

Isoelectric Point (pI)

56.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer4_7	PF12838	152 - 206	1.6e-12	4Fe-4S dicluster domain
Fer4_9	PF13187	152 - 207	1.5e-07	4Fe-4S dicluster domain
Fer4	PF00037	186 - 207	2.9e-08	4Fe-4S binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16700 AT1G79010
fragaria_vesca	FvH4_5g29280
malus_domestica	MD05G1066300.v1.1 MD10G1076300.v1.1
prunus_persica	Prupe.8G096900_v2.0.a1 Prupe.8G096900_v2.0.a1
pyrus_communis	pycom05g05750 pycom10g05970
rosa_chinensis	RchiOBHm_Chr7g0222141
rosa_laevigata	RLG00000002089
rosa_multiflora	Rmu_sc0006951.1_g000002
rosa_roxburghii	Rroxscaffold_3G00237380
rosa_rugosa	Rorug07G0205700
rosa_samantha	Rh7AG346900 Rh7BG336800 Rh7CG364200 Rh7DG344900
rosa_wichuraiana	Rw7G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	267
AclWI	GGATC	2 cut(s)	165, 178
AcsI	RAATTY	2 cut(s)	70, 641
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	150, 347
AfiI	CCNNNNNNNGG	2 cut(s)	267, 496
AgsI	TTSAA	3 cut(s)	69, 641, 648
AjnI	CCWGG	2 cut(s)	121, 151
AluBI	AGCT	7 cut(s)	17, 52, 58, 198, 482, 667, 688
AluI	AGCT	7 cut(s)	17, 52, 58, 198, 482, 667, 688
Alw26I	GTCTC	3 cut(s)	647, 696, 707
AlwI	GGATC	2 cut(s)	165, 178
Ama87I	CYCGRG	2 cut(s)	59, 692
ApeKI	GCWGC	3 cut(s)	5, 94, 688
ApoI	RAATTY	2 cut(s)	70, 641
ArsI	GACNNNNNNTTYG	2 cut(s)	242, 274
Asp700I	GAANNNNTTC	1 cut(s)	318
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	3 cut(s)	133, 392, 629
AsuHPI	GGTGA	1 cut(s)	428
AvaI	CYCGRG	2 cut(s)	59, 692
AvaII	GGWCC	3 cut(s)	133, 392, 629
BamHI	GGATCC	1 cut(s)	170
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	2 cut(s)	81, 675
BccI	CCATC	1 cut(s)	524
BceAI	ACGGC	2 cut(s)	446, 522
BciT130I	CCWGG	2 cut(s)	123, 153
BcoDI	GTCTC	3 cut(s)	647, 696, 707
BfaI	CTAG	3 cut(s)	14, 221, 549
BfmI	CTRYAG	2 cut(s)	164, 441
BglII	AGATCT	1 cut(s)	737
BisI	GCNGC	3 cut(s)	6, 95, 689
BlsI	GCNGC	3 cut(s)	7, 96, 690
BmcAI	AGTACT	1 cut(s)	347
Bme1390I	CCNGG	2 cut(s)	123, 153
Bme18I	GGWCC	3 cut(s)	133, 392, 629
BmeT110I	CYCGRG	2 cut(s)	59, 692
BmgT120I	GGNCC	3 cut(s)	133, 392, 629
BmiI	GGNNCC	2 cut(s)	172, 393
BmrFI	CCNGG	2 cut(s)	123, 153
BmsI	GCATC	4 cut(s)	300, 321, 585, 604
BpmI	CTGGAG	1 cut(s)	289
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	1 cut(s)	326
BsaI	GGTCTC	1 cut(s)	696
BsaJI	CCNNGG	2 cut(s)	152, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	267, 496
Bse1I	ACTGG	3 cut(s)	249, 272, 608
Bse3DI	GCAATG	2 cut(s)	202, 459
BseBI	CCWGG	2 cut(s)	123, 153
BseDI	CCNNGG	2 cut(s)	152, 261
BseGI	GGATG	2 cut(s)	131, 232
BseLI	CCNNNNNNNGG	2 cut(s)	267, 496
BseMI	GCAATG	2 cut(s)	202, 459
BseMII	CTCAG	4 cut(s)	507, 708, 717, 748
BseNI	ACTGG	3 cut(s)	249, 272, 608
BseRI	GAGGAG	1 cut(s)	677
BseXI	GCAGC	2 cut(s)	81, 675
BseYI	CCCAGC	1 cut(s)	490
BsiHKCI	CYCGRG	2 cut(s)	59, 692
BslI	CCNNNNNNNGG	2 cut(s)	267, 496
BsmAI	GTCTC	3 cut(s)	647, 696, 707
BsmI	GAATGC	1 cut(s)	192
Bso31I	GGTCTC	1 cut(s)	696
BsoBI	CYCGRG	2 cut(s)	59, 692
Bsp143I	GATC	2 cut(s)	170, 737
BspCNI	CTCAG	4 cut(s)	508, 709, 718, 747
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	2 cut(s)	172, 393
BspMAI	CTGCAG	1 cut(s)	168
BspPI	GGATC	2 cut(s)	165, 178
BspQI	GCTCTTC	2 cut(s)	42, 444
BspTNI	GGTCTC	1 cut(s)	696
BsrDI	GCAATG	2 cut(s)	202, 459
BsrI	ACTGG	3 cut(s)	249, 272, 608
BssECI	CCNNGG	2 cut(s)	152, 261
BssMI	GATC	2 cut(s)	170, 737
BssT1I	CCWWGG	1 cut(s)	261
Bst2UI	CCWGG	2 cut(s)	123, 153
Bst4CI	ACNGT	2 cut(s)	584, 707
Bst6I	CTCTTC	2 cut(s)	42, 444
BstAPI	GCANNNNNTGC	1 cut(s)	465
BstC8I	GCNNGC	1 cut(s)	466
BstDEI	CTNAG	4 cut(s)	516, 717, 726, 734
BstF5I	GGATG	2 cut(s)	131, 232
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	2 cut(s)	173, 740
BstMAI	GTCTC	3 cut(s)	647, 696, 707
BstMBI	GATC	2 cut(s)	170, 737
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 41, 204, 465
BstNI	CCWGG	2 cut(s)	123, 153
BstNSI	RCATGY	2 cut(s)	425, 606
BstSCI	CCNGG	2 cut(s)	121, 151
BstSFI	CTRYAG	2 cut(s)	164, 441
BstV1I	GCAGC	2 cut(s)	81, 675
BstX2I	RGATCY	2 cut(s)	170, 737
BstXI	CCANNNNNNTGG	1 cut(s)	182
BstYI	RGATCY	2 cut(s)	170, 737
BtsCI	GGATG	2 cut(s)	131, 232
BtsI	GCAGTG	2 cut(s)	118, 161
BtsIMutI	CAGTG	2 cut(s)	118, 161
Cac8I	GCNNGC	1 cut(s)	466
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	3 cut(s)	133, 392, 629
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	2 cut(s)	149, 346
CviAII	CATG	4 cut(s)	422, 565, 603, 659
CviQI	GTAC	2 cut(s)	149, 346
DdeI	CTNAG	4 cut(s)	516, 717, 726, 734
DpnI	GATC	2 cut(s)	172, 739
DpnII	GATC	2 cut(s)	170, 737
Eam1104I	CTCTTC	2 cut(s)	42, 444
EarI	CTCTTC	2 cut(s)	42, 444
Eco130I	CCWWGG	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	696
Eco47I	GGWCC	3 cut(s)	133, 392, 629
Eco57I	CTGAAG	1 cut(s)	38
Eco88I	CYCGRG	2 cut(s)	59, 692
EcoO109I	RGGNCCY	1 cut(s)	392
EcoRII	CCWGG	2 cut(s)	121, 151
EcoT14I	CCWWGG	1 cut(s)	261
ErhI	CCWWGG	1 cut(s)	261
FaeI	CATG	4 cut(s)	425, 568, 606, 662
FaiI	YATR	8 cut(s)	131, 183, 423, 555, 566, 604, 660, 675
FatI	CATG	4 cut(s)	421, 564, 602, 658
Fnu4HI	GCNGC	3 cut(s)	6, 95, 689
FokI	GGATG	2 cut(s)	138, 239
Fsp4HI	GCNGC	3 cut(s)	6, 95, 689
FspBI	CTAG	3 cut(s)	14, 221, 549
GlaI	GCGC	1 cut(s)	98
GluI	GCNGC	3 cut(s)	6, 95, 689
GsaI	CCCAGC	1 cut(s)	494
GsuI	CTGGAG	1 cut(s)	289
HgaI	GACGC	1 cut(s)	346
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	4 cut(s)	425, 568, 606, 662
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HinfI	GANTC	2 cut(s)	400, 655
HphI	GGTGA	1 cut(s)	428
Hpy166II	GTNNAC	1 cut(s)	419
Hpy188I	TCNGA	4 cut(s)	21, 330, 737, 742
Hpy188III	TCNNGA	6 cut(s)	61, 75, 385, 596, 659, 694
Hpy8I	GTNNAC	1 cut(s)	419
HpyAV	CCTTC	3 cut(s)	38, 382, 620
HpyCH4III	ACNGT	2 cut(s)	584, 707
HpyCH4V	TGCA	5 cut(s)	166, 190, 459, 468, 576
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 41, 204, 465
HpyF3I	CTNAG	4 cut(s)	516, 717, 726, 734
Hsp92II	CATG	4 cut(s)	425, 568, 606, 662
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	170, 737
LguI	GCTCTTC	2 cut(s)	42, 444
LmnI	GCTCC	1 cut(s)	664
Lsp1109I	GCAGC	2 cut(s)	81, 675
LweI	GCATC	4 cut(s)	300, 321, 585, 604
MaeI	CTAG	3 cut(s)	14, 221, 549
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	2 cut(s)	172, 739
MboI	GATC	2 cut(s)	170, 737
MboII	GAAGA	3 cut(s)	29, 461, 539
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	2 cut(s)	170, 737
MluCI	AATT	5 cut(s)	70, 373, 501, 507, 641
MlyI	GAGTC	2 cut(s)	409, 649
MroXI	GAANNNNTTC	1 cut(s)	318
MslI	CAYNNNNRTG	2 cut(s)	180, 563
MspR9I	CCNGG	2 cut(s)	123, 153
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	192
MvaI	CCWGG	2 cut(s)	123, 153
MwoI	GCNNNNNNNGC	4 cut(s)	14, 41, 204, 465
NdeII	GATC	2 cut(s)	170, 737
NlaIII	CATG	4 cut(s)	425, 568, 606, 662
NlaIV	GGNNCC	2 cut(s)	172, 393
NspI	RCATGY	2 cut(s)	425, 606
PaeR7I	CTCGAG	2 cut(s)	59, 692
PagI	TCATGA	1 cut(s)	658
PciSI	GCTCTTC	2 cut(s)	42, 444
PctI	GAATGC	1 cut(s)	192
PdmI	GAANNNNTTC	1 cut(s)	318
PflMI	CCANNNNNTGG	1 cut(s)	267
PfoI	TCCNGGA	1 cut(s)	121
PkrI	GCNGC	3 cut(s)	7, 96, 690
PleI	GAGTC	2 cut(s)	408, 649
PpsI	GAGTC	2 cut(s)	408, 649
PpuMI	RGGWCCY	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	392
Psp6I	CCWGG	2 cut(s)	121, 151
PspFI	CCCAGC	1 cut(s)	490
PspGI	CCWGG	2 cut(s)	121, 151
PspN4I	GGNNCC	2 cut(s)	172, 393
PspPI	GGNCC	3 cut(s)	133, 392, 629
PspPPI	RGGWCCY	1 cut(s)	392
PsrI	GAACNNNNNNTAC	2 cut(s)	411, 443
PstI	CTGCAG	1 cut(s)	168
PsuI	RGATCY	2 cut(s)	170, 737
RsaI	GTAC	2 cut(s)	150, 347
RsaNI	GTAC	2 cut(s)	149, 346
RseI	CAYNNNNRTG	2 cut(s)	180, 563
SapI	GCTCTTC	2 cut(s)	42, 444
SatI	GCNGC	3 cut(s)	6, 95, 689
Sau3AI	GATC	2 cut(s)	170, 737
Sau96I	GGNCC	3 cut(s)	133, 392, 629
ScaI	AGTACT	1 cut(s)	347
SchI	GAGTC	2 cut(s)	409, 649
ScrFI	CCNGG	2 cut(s)	123, 153
SfaNI	GCATC	4 cut(s)	300, 321, 585, 604
SfcI	CTRYAG	2 cut(s)	164, 441
Sfr274I	CTCGAG	2 cut(s)	59, 692
SinI	GGWCC	3 cut(s)	133, 392, 629
SlaI	CTCGAG	2 cut(s)	59, 692
SmiMI	CAYNNNNRTG	2 cut(s)	180, 563
SmlI	CTYRAG	3 cut(s)	59, 341, 692
SmoI	CTYRAG	3 cut(s)	59, 341, 692
Sse9I	AATT	5 cut(s)	70, 373, 501, 507, 641
SspMI	CTAG	3 cut(s)	14, 221, 549
StyD4I	CCNGG	2 cut(s)	121, 151
StyI	CCWWGG	1 cut(s)	261
TaaI	ACNGT	2 cut(s)	584, 707
TaqI	TCGA	5 cut(s)	60, 76, 322, 384, 693
TasI	AATT	5 cut(s)	70, 373, 501, 507, 641
TatI	WGTACW	1 cut(s)	345
TscAI	CASTG	2 cut(s)	118, 168
TseI	GCWGC	3 cut(s)	5, 94, 688
TspGWI	ACGGA	1 cut(s)	665
TspRI	CASTG	2 cut(s)	118, 168
Van91I	CCANNNNNTGG	1 cut(s)	267
VpaK11BI	GGWCC	3 cut(s)	133, 392, 629
XapI	RAATTY	2 cut(s)	70, 641
XceI	RCATGY	2 cut(s)	425, 606
XhoI	CTCGAG	2 cut(s)	59, 692
XmnI	GAANNNNTTC	1 cut(s)	318
XspI	CTAG	3 cut(s)	14, 221, 549
ZrmI	AGTACT	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.