Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0012371

Physical Location & Seq

Genomic Coordinates Reverse (-)

45576637 .. 45581319

Gene Structure 4683 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG344900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCGATCCAGCTCACATTGCTACTCAACTAAACTAGAGGATGAGGAAAGAGAGCAACTGGCAAAGGAGATGTCCAAGGACTGGAGTGCTGTTTTTGAGAGAAGCATCAACACACTATTTCTTACTGAAATGGTTCGAGGTCTGATGCTGACGCTCAAGTACTTTTTTGAGCAAAAAGTTACTATCAATTATCCATTCGAGAAGGGTCCTTTGAGTCCTCGTTTTCGTGGTGAACATGCCCTGCGGCGTTATCCTACAGGAGAGGAGCGTTGCATTGCCTGCAAACTTTGTGAAGCTATTTGCCCAGCACAGGCAATTACAATTGAGGCTGAGGAACGAGAAGATGGTAGCCGTAGGACTACTAGGTATGACATTGACATGACAAAGTGCATCTACTGTGGGTTCTGTCAAGAAGCATGTCCAGTAGATGCTATTGTAGAAGGACCAAACTTTGAATTTTCAACAGAGACTCATGAGGAGCTTCTTTATGACAAAGAAAAGCTGCTCGAGAATGGAGACCGTTGGGAGACTGAGATTGCTGAGAACCTCAGATCTGAAAGCCTCTATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer4

Protein Analysis

190

Amino Acids

22.26

Weight (kDa)

4.93

Isoelectric Point (pI)

56.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer4_7	PF12838	90 - 144	9.5e-13	4Fe-4S dicluster domain
Fer4_9	PF13187	90 - 145	8.8e-08	4Fe-4S dicluster domain
Fer4	PF00037	124 - 145	1.9e-08	4Fe-4S binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0012371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16700 AT1G79010
fragaria_vesca	FvH4_5g29280
malus_domestica	MD05G1066300.v1.1 MD10G1076300.v1.1
prunus_persica	Prupe.8G096900_v2.0.a1 Prupe.8G096900_v2.0.a1
pyrus_communis	pycom05g05750 pycom10g05970
rosa_chinensis	RchiOBHm_Chr7g0222141
rosa_laevigata	RLG00000002089
rosa_multiflora	Rmu_sc0006951.1_g000002
rosa_roxburghii	Rroxscaffold_3G00237380
rosa_rugosa	Rorug07G0205700
rosa_samantha	Rh7AG346900 Rh7BG336800 Rh7CG364200 Rh7DG344900
rosa_wichuraiana	Rw7G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	81
AciI	CCGC	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	455
AfaI	GTAC	1 cut(s)	161
AfiI	CCNNNNNNNGG	2 cut(s)	81, 310
AgsI	TTSAA	2 cut(s)	455, 462
AluBI	AGCT	4 cut(s)	12, 296, 481, 502
AluI	AGCT	4 cut(s)	12, 296, 481, 502
Alw26I	GTCTC	3 cut(s)	461, 510, 521
Ama87I	CYCGRG	1 cut(s)	506
ApeKI	GCWGC	1 cut(s)	502
ApoI	RAATTY	1 cut(s)	455
ArsI	GACNNNNNNTTYG	2 cut(s)	56, 88
Asp700I	GAANNNNTTC	1 cut(s)	132
AspS9I	GGNCC	2 cut(s)	206, 443
AsuHPI	GGTGA	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	506
AvaII	GGWCC	2 cut(s)	206, 443
BbvCI	CCTCAGC	1 cut(s)	330
BbvI	GCAGC	1 cut(s)	489
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	1 cut(s)	336
BcoDI	GTCTC	3 cut(s)	461, 510, 521
BfaI	CTAG	2 cut(s)	35, 363
BfmI	CTRYAG	1 cut(s)	255
BglII	AGATCT	1 cut(s)	551
BisI	GCNGC	2 cut(s)	245, 503
BlsI	GCNGC	2 cut(s)	246, 504
BmcAI	AGTACT	1 cut(s)	161
Bme18I	GGWCC	2 cut(s)	206, 443
BmeT110I	CYCGRG	1 cut(s)	506
BmgT120I	GGNCC	2 cut(s)	206, 443
BmiI	GGNNCC	1 cut(s)	207
BmsI	GCATC	4 cut(s)	114, 135, 399, 418
BpmI	CTGGAG	1 cut(s)	103
Bpu10I	CCTNAGC	1 cut(s)	330
BpuEI	CTTGAG	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	510
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 310
Bse1I	ACTGG	3 cut(s)	63, 86, 422
Bse3DI	GCAATG	2 cut(s)	16, 273
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	2 cut(s)	81, 310
BseMI	GCAATG	2 cut(s)	16, 273
BseMII	CTCAG	4 cut(s)	321, 522, 531, 562
BseNI	ACTGG	3 cut(s)	63, 86, 422
BseRI	GAGGAG	2 cut(s)	278, 491
BseXI	GCAGC	1 cut(s)	489
BseYI	CCCAGC	1 cut(s)	304
BsiHKCI	CYCGRG	1 cut(s)	506
BslI	CCNNNNNNNGG	2 cut(s)	81, 310
BsmAI	GTCTC	3 cut(s)	461, 510, 521
Bso31I	GGTCTC	1 cut(s)	510
BsoBI	CYCGRG	1 cut(s)	506
Bsp143I	GATC	2 cut(s)	5, 551
BspACI	CCGC	1 cut(s)	244
BspCNI	CTCAG	4 cut(s)	322, 523, 532, 561
BspHI	TCATGA	1 cut(s)	472
BspLI	GGNNCC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	510
BsrDI	GCAATG	2 cut(s)	16, 273
BsrI	ACTGG	3 cut(s)	63, 86, 422
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	2 cut(s)	5, 551
BssT1I	CCWWGG	1 cut(s)	75
Bst4CI	ACNGT	2 cut(s)	398, 521
BstAPI	GCANNNNNTGC	1 cut(s)	279
BstC8I	GCNNGC	1 cut(s)	280
BstDEI	CTNAG	4 cut(s)	330, 531, 540, 548
BstF5I	GGATG	1 cut(s)	46
BstKTI	GATC	2 cut(s)	8, 554
BstMAI	GTCTC	3 cut(s)	461, 510, 521
BstMBI	GATC	2 cut(s)	5, 551
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 279
BstNSI	RCATGY	2 cut(s)	239, 420
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	1 cut(s)	489
BstX2I	RGATCY	1 cut(s)	551
BstYI	RGATCY	1 cut(s)	551
BtsCI	GGATG	1 cut(s)	46
Cac8I	GCNNGC	1 cut(s)	280
CciI	TCATGA	1 cut(s)	472
Cfr13I	GGNCC	2 cut(s)	206, 443
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	4 cut(s)	236, 379, 417, 473
CviJI	RGCY	7 cut(s)	12, 296, 329, 351, 481, 502, 561
CviKI_1	RGCY	7 cut(s)	12, 296, 329, 351, 481, 502, 561
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	4 cut(s)	330, 531, 540, 548
DpnI	GATC	2 cut(s)	7, 553
DpnII	GATC	2 cut(s)	5, 551
Eco130I	CCWWGG	1 cut(s)	75
Eco31I	GGTCTC	1 cut(s)	510
Eco47I	GGWCC	2 cut(s)	206, 443
Eco88I	CYCGRG	1 cut(s)	506
EcoO109I	RGGNCCY	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	75
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	4 cut(s)	239, 382, 420, 476
FaiI	YATR	6 cut(s)	237, 369, 380, 418, 474, 489
FatI	CATG	4 cut(s)	235, 378, 416, 472
Fnu4HI	GCNGC	2 cut(s)	245, 503
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	2 cut(s)	245, 503
FspBI	CTAG	2 cut(s)	35, 363
GluI	GCNGC	2 cut(s)	245, 503
GsaI	CCCAGC	1 cut(s)	308
GsuI	CTGGAG	1 cut(s)	103
HgaI	GACGC	1 cut(s)	160
Hin1II	CATG	4 cut(s)	239, 382, 420, 476
HinfI	GANTC	2 cut(s)	214, 469
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	3 cut(s)	144, 551, 556
Hpy188III	TCNNGA	4 cut(s)	199, 410, 473, 508
Hpy8I	GTNNAC	1 cut(s)	233
HpyAV	CCTTC	2 cut(s)	196, 434
HpyCH4III	ACNGT	2 cut(s)	398, 521
HpyCH4V	TGCA	3 cut(s)	273, 282, 390
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 279
HpyF3I	CTNAG	4 cut(s)	330, 531, 540, 548
Hsp92II	CATG	4 cut(s)	239, 382, 420, 476
Kzo9I	GATC	2 cut(s)	5, 551
LmnI	GCTCC	2 cut(s)	265, 478
LpnPI	CCDG	9 cut(s)	22, 44, 67, 243, 254, 292, 296, 318, 435
Lsp1109I	GCAGC	1 cut(s)	489
LweI	GCATC	4 cut(s)	114, 135, 399, 418
MaeI	CTAG	2 cut(s)	35, 363
MaeIII	GTNAC	1 cut(s)	178
MalI	GATC	2 cut(s)	7, 553
MboI	GATC	2 cut(s)	5, 551
MboII	GAAGA	1 cut(s)	353
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	1 cut(s)	551
MluCI	AATT	4 cut(s)	187, 315, 321, 455
MlyI	GAGTC	2 cut(s)	223, 463
MroXI	GAANNNNTTC	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	377
MunI	CAATTG	1 cut(s)	321
MwoI	GCNNNNNNNGC	2 cut(s)	18, 279
NdeII	GATC	2 cut(s)	5, 551
NlaIII	CATG	4 cut(s)	239, 382, 420, 476
NlaIV	GGNNCC	1 cut(s)	207
NspI	RCATGY	2 cut(s)	239, 420
PaeR7I	CTCGAG	1 cut(s)	506
PagI	TCATGA	1 cut(s)	472
PdmI	GAANNNNTTC	1 cut(s)	132
PflMI	CCANNNNNTGG	1 cut(s)	81
PkrI	GCNGC	2 cut(s)	246, 504
PleI	GAGTC	2 cut(s)	222, 463
PpsI	GAGTC	2 cut(s)	222, 463
PpuMI	RGGWCCY	1 cut(s)	206
Psp5II	RGGWCCY	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	207
PspPI	GGNCC	2 cut(s)	206, 443
PspPPI	RGGWCCY	1 cut(s)	206
PsuI	RGATCY	1 cut(s)	551
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
RseI	CAYNNNNRTG	1 cut(s)	377
SatI	GCNGC	2 cut(s)	245, 503
Sau3AI	GATC	2 cut(s)	5, 551
Sau96I	GGNCC	2 cut(s)	206, 443
ScaI	AGTACT	1 cut(s)	161
SchI	GAGTC	2 cut(s)	223, 463
SetI	ASST	7 cut(s)	14, 142, 298, 368, 483, 504, 549
SfaNI	GCATC	4 cut(s)	114, 135, 399, 418
SfcI	CTRYAG	1 cut(s)	255
Sfr274I	CTCGAG	1 cut(s)	506
SinI	GGWCC	2 cut(s)	206, 443
SlaI	CTCGAG	1 cut(s)	506
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	2 cut(s)	155, 506
SmoI	CTYRAG	2 cut(s)	155, 506
Sse9I	AATT	4 cut(s)	187, 315, 321, 455
SsiI	CCGC	1 cut(s)	244
SspMI	CTAG	2 cut(s)	35, 363
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	398, 521
TaqI	TCGA	3 cut(s)	136, 198, 507
TasI	AATT	4 cut(s)	187, 315, 321, 455
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	1 cut(s)	247
TseI	GCWGC	1 cut(s)	502
Van91I	CCANNNNNTGG	1 cut(s)	81
VpaK11BI	GGWCC	2 cut(s)	206, 443
XapI	RAATTY	1 cut(s)	455
XceI	RCATGY	2 cut(s)	239, 420
XhoI	CTCGAG	1 cut(s)	506
XmnI	GAANNNNTTC	1 cut(s)	132
XspI	CTAG	2 cut(s)	35, 363
ZrmI	AGTACT	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.