Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0012371

Physical Location & Seq

Genomic Coordinates Reverse (-)

20302837 .. 20307557

Gene Structure 4721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g29280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGAGTCTTCAGCATAGAATGTTGTATCTTTCGGCATGGGGCCTGTTTCATGGCTTAAAGTTGGCTTCTAATCTGCACATTTCAAAGCTTGAGATTGAATCTGAGTCTGCTATCCTTGTGCATCTTATGAAAAGTGCCAATCTCTCTCTCCATCCCCTAGGATCTCTTCTCAATGGTTGCAAAAGCATGATGTCCCAAATGGATGATGTGAAGCTTTCTCATGTGTTCAGAGAGTCCAACATGATAGCTGATGTCCTAGCAAAGTGCAGCATCTCAAATGATCTTGGTCTCATTCTCTTTGAAGAACCTCCAGCTCATGCCATTCTAGTTTTTCTTTATGATTTAGTTGCTAAGACGAAAGAAAGAAAGAAATTGCAGTCGATTCCCAAATCGAGGAAGGAAAGAAGGAAGAGAGAAGAAGAAGCAGCGTCGTCAATGGCTGCCTTTCTAGCTCGTAAATCTCTTCAGACTCTTCGTGCCAGACAGCTTCAGCTCGCTGTACCAGGAAAACCACTGCAGGGATCTCAATTCTATGGACTGCGATCTAGCTCACATTGCTACTCAACTAAACTAGAGGATGAGGAAAGAGAACAACTGGCAAAGGAGATGTCCAAGGACTGGAGTGCTGTTTTTGAGAGAAGCATCAACACACTATTTCTTACTGAAATGGTTCGAGGTCTGATGCTGACGCTCAAGTACTTCTTTGAGCAAAAAGTTACTATCAATTATCCATTTGAGAAGGGTCCTTTGAGTCCTCGTTTTCGTGGTGAACATGCCCTACGGCGTTATCCTACAGGAGAAGAGCGTTGCATTGCGTGCAAACTTTGTGAAGCTATTTGCCCGGCACAGGCAATTACGATCGAGGCTGAGGAACGAGAAGATGGTAGCCGTAGGACTACTAGGTATGACATTGACATGACAAAGTGCATCTACTGTGGATTCTGTCAAGAGGCATGTCCAGTAGATGCTATTGTAGAAGGACCAAACTTTGAATTTTCAACCGAAACTCATGAGGAGCTTCTTTATGACAAAGAAAAGCTTCTTGAGAATGGAGACCGTTGGGAGACTGAGATTGCTGAGAACCTCAGATCTGAAAGCCTCTATCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer4

Protein Analysis

370

Amino Acids

42.29

Weight (kDa)

6.58

Isoelectric Point (pI)

57.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	12 - 88	1.5e-13	Reverse transcriptase-like
Fer4_7	PF12838	269 - 323	2.9e-12	4Fe-4S dicluster domain
Fer4_9	PF13187	269 - 324	2.7e-07	4Fe-4S dicluster domain
Fer4	PF00037	303 - 324	4.7e-08	4Fe-4S binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16700 AT1G79010
fragaria_vesca	FvH4_5g29280
malus_domestica	MD05G1066300.v1.1 MD10G1076300.v1.1
prunus_persica	Prupe.8G096900_v2.0.a1 Prupe.8G096900_v2.0.a1
pyrus_communis	pycom05g05750 pycom10g05970
rosa_chinensis	RchiOBHm_Chr7g0222141
rosa_laevigata	RLG00000002089
rosa_multiflora	Rmu_sc0006951.1_g000002
rosa_roxburghii	Rroxscaffold_3G00237380
rosa_rugosa	Rorug07G0205700
rosa_samantha	Rh7AG346900 Rh7BG336800 Rh7CG364200 Rh7DG344900
rosa_wichuraiana	Rw7G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	618
AclWI	GGATC	2 cut(s)	169, 529
AcsI	RAATTY	1 cut(s)	992
AcuI	CTGAAG	2 cut(s)	449, 473
AfaI	GTAC	2 cut(s)	501, 698
AfiI	CCNNNNNNNGG	4 cut(s)	393, 518, 618, 847
AgsI	TTSAA	5 cut(s)	84, 98, 302, 992, 999
AjnI	CCWGG	1 cut(s)	502
Alw26I	GTCTC	3 cut(s)	293, 1047, 1058
AlwI	GGATC	2 cut(s)	169, 529
AoxI	GGCC	1 cut(s)	40
ApeKI	GCWGC	3 cut(s)	267, 425, 440
ApoI	RAATTY	1 cut(s)	992
ArsI	GACNNNNNNTTYG	2 cut(s)	593, 625
Asp700I	GAANNNNTTC	2 cut(s)	669, 1038
AspA2I	CCTAGG	1 cut(s)	157
AspS9I	GGNCC	3 cut(s)	40, 743, 980
AsuC2I	CCSGG	1 cut(s)	842
AsuHPI	GGTGA	1 cut(s)	779
AvaII	GGWCC	2 cut(s)	743, 980
AvrII	CCTAGG	1 cut(s)	157
BbvCI	CCTCAGC	1 cut(s)	867
BbvI	GCAGC	3 cut(s)	279, 427, 437
BccI	CCATC	2 cut(s)	159, 875
BceAI	ACGGC	2 cut(s)	797, 873
BciT130I	CCWGG	1 cut(s)	504
BcnI	CCSGG	1 cut(s)	842
BcoDI	GTCTC	3 cut(s)	293, 1047, 1058
BfaI	CTAG	7 cut(s)	158, 257, 326, 449, 546, 572, 900
BfmI	CTRYAG	2 cut(s)	515, 792
BglII	AGATCT	1 cut(s)	1088
BisI	GCNGC	3 cut(s)	268, 426, 441
BlnI	CCTAGG	1 cut(s)	157
BlsI	GCNGC	3 cut(s)	269, 427, 442
BmcAI	AGTACT	1 cut(s)	698
Bme1390I	CCNGG	2 cut(s)	504, 842
Bme18I	GGWCC	2 cut(s)	743, 980
BmgT120I	GGNCC	3 cut(s)	40, 743, 980
BmiI	GGNNCC	2 cut(s)	41, 744
BmrFI	CCNGG	2 cut(s)	504, 842
BmsI	GCATC	6 cut(s)	130, 279, 651, 672, 936, 955
BpmI	CTGGAG	2 cut(s)	294, 640
Bpu10I	CCTNAGC	1 cut(s)	867
BpuEI	CTTGAG	3 cut(s)	110, 677, 1064
BpuMI	CCSGG	1 cut(s)	842
BsaI	GGTCTC	2 cut(s)	293, 1047
BsaJI	CCNNGG	2 cut(s)	157, 612
Bsc4I	CCNNNNNNNGG	4 cut(s)	393, 518, 618, 847
Bse1I	ACTGG	3 cut(s)	600, 623, 959
Bse3DI	GCAATG	2 cut(s)	553, 810
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	2 cut(s)	157, 612
BseGI	GGATG	3 cut(s)	151, 208, 583
BseLI	CCNNNNNNNGG	4 cut(s)	393, 518, 618, 847
BseMI	GCAATG	2 cut(s)	553, 810
BseMII	CTCAG	5 cut(s)	93, 858, 1059, 1068, 1099
BseNI	ACTGG	3 cut(s)	600, 623, 959
BseRI	GAGGAG	1 cut(s)	1028
BseXI	GCAGC	3 cut(s)	279, 427, 437
BsgI	GTGCAG	2 cut(s)	59, 286
Bsh1285I	CGRYCG	1 cut(s)	861
BshFI	GGCC	1 cut(s)	42
BsiEI	CGRYCG	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	842
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	4 cut(s)	393, 518, 618, 847
BsmAI	GTCTC	3 cut(s)	293, 1047, 1058
BsmFI	GGGAC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	42
Bso31I	GGTCTC	2 cut(s)	293, 1047
Bsp143I	GATC	6 cut(s)	161, 280, 521, 542, 858, 1088
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	5 cut(s)	94, 859, 1060, 1069, 1098
BspHI	TCATGA	1 cut(s)	1009
BspLI	GGNNCC	2 cut(s)	41, 744
BspMAI	CTGCAG	1 cut(s)	519
BspPI	GGATC	2 cut(s)	169, 529
BspQI	GCTCTTC	1 cut(s)	795
BspTNI	GGTCTC	2 cut(s)	293, 1047
BsrDI	GCAATG	2 cut(s)	553, 810
BsrI	ACTGG	3 cut(s)	600, 623, 959
BssECI	CCNNGG	2 cut(s)	157, 612
BssMI	GATC	6 cut(s)	161, 280, 521, 542, 858, 1088
BssT1I	CCWWGG	2 cut(s)	157, 612
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	2 cut(s)	935, 1058
Bst6I	CTCTTC	5 cut(s)	171, 404, 468, 477, 795
BstAPI	GCANNNNNTGC	1 cut(s)	816
BstC8I	GCNNGC	2 cut(s)	495, 817
BstDEI	CTNAG	6 cut(s)	102, 351, 867, 1068, 1077, 1085
BstF5I	GGATG	3 cut(s)	151, 208, 583
BstKTI	GATC	6 cut(s)	164, 283, 524, 545, 861, 1091
BstMAI	GTCTC	3 cut(s)	293, 1047, 1058
BstMBI	GATC	6 cut(s)	161, 280, 521, 542, 858, 1088
BstMCI	CGRYCG	1 cut(s)	861
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 555, 816
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	2 cut(s)	776, 957
BstSCI	CCNGG	2 cut(s)	502, 840
BstSFI	CTRYAG	2 cut(s)	515, 792
BstV1I	GCAGC	3 cut(s)	279, 427, 437
BstX2I	RGATCY	3 cut(s)	161, 521, 1088
BstYI	RGATCY	3 cut(s)	161, 521, 1088
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	151, 208, 583
BtsI	GCAGTG	1 cut(s)	512
BtsIMutI	CAGTG	1 cut(s)	512
Cac8I	GCNNGC	2 cut(s)	495, 817
CciI	TCATGA	1 cut(s)	1009
Cfr13I	GGNCC	3 cut(s)	40, 743, 980
CseI	GACGC	2 cut(s)	417, 697
Csp6I	GTAC	2 cut(s)	500, 697
CviQI	GTAC	2 cut(s)	500, 697
DdeI	CTNAG	6 cut(s)	102, 351, 867, 1068, 1077, 1085
DpnI	GATC	6 cut(s)	163, 282, 523, 544, 860, 1090
DpnII	GATC	6 cut(s)	161, 280, 521, 542, 858, 1088
Eam1104I	CTCTTC	5 cut(s)	171, 404, 468, 477, 795
EarI	CTCTTC	5 cut(s)	171, 404, 468, 477, 795
Eco130I	CCWWGG	2 cut(s)	157, 612
Eco31I	GGTCTC	2 cut(s)	293, 1047
Eco47I	GGWCC	2 cut(s)	743, 980
Eco57I	CTGAAG	2 cut(s)	449, 473
EcoO109I	RGGNCCY	2 cut(s)	40, 743
EcoRII	CCWGG	1 cut(s)	502
EcoT14I	CCWWGG	2 cut(s)	157, 612
ErhI	CCWWGG	2 cut(s)	157, 612
FalI	AAGNNNNNCTT	4 cut(s)	686, 718, 1023, 1055
FaqI	GGGAC	1 cut(s)	178
Fnu4HI	GCNGC	3 cut(s)	268, 426, 441
FokI	GGATG	3 cut(s)	138, 215, 590
Fsp4HI	GCNGC	3 cut(s)	268, 426, 441
FspBI	CTAG	7 cut(s)	158, 257, 326, 449, 546, 572, 900
GluI	GCNGC	3 cut(s)	268, 426, 441
GsuI	CTGGAG	2 cut(s)	294, 640
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	1 cut(s)	842
HgaI	GACGC	2 cut(s)	417, 697
HindIII	AAGCTT	3 cut(s)	86, 212, 1037
HinfI	GANTC	8 cut(s)	4, 98, 104, 233, 382, 469, 751, 939
HpaII	CCGG	1 cut(s)	842
HphI	GGTGA	1 cut(s)	779
Hpy166II	GTNNAC	1 cut(s)	770
Hpy188I	TCNGA	6 cut(s)	103, 230, 468, 681, 1088, 1093
Hpy188III	TCNNGA	3 cut(s)	947, 1010, 1043
Hpy8I	GTNNAC	1 cut(s)	770
Hpy99I	CGWCG	1 cut(s)	433
HpyAV	CCTTC	4 cut(s)	391, 399, 733, 971
HpyCH4III	ACNGT	2 cut(s)	935, 1058
HpyCH4V	TGCA	9 cut(s)	76, 121, 180, 267, 376, 517, 810, 819, 927
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 555, 816
HpyF3I	CTNAG	6 cut(s)	102, 351, 867, 1068, 1077, 1085
Kzo9I	GATC	6 cut(s)	161, 280, 521, 542, 858, 1088
LguI	GCTCTTC	1 cut(s)	795
LmnI	GCTCC	1 cut(s)	1015
Lsp1109I	GCAGC	3 cut(s)	279, 427, 437
LweI	GCATC	6 cut(s)	130, 279, 651, 672, 936, 955
MaeI	CTAG	7 cut(s)	158, 257, 326, 449, 546, 572, 900
MaeIII	GTNAC	1 cut(s)	715
MalI	GATC	6 cut(s)	163, 282, 523, 544, 860, 1090
MboI	GATC	6 cut(s)	161, 280, 521, 542, 858, 1088
MboII	GAAGA	9 cut(s)	158, 314, 421, 428, 431, 455, 464, 812, 890
MflI	RGATCY	3 cut(s)	161, 521, 1088
MluCI	AATT	5 cut(s)	371, 527, 724, 852, 992
MlyI	GAGTC	5 cut(s)	13, 113, 242, 463, 760
MmeI	TCCRAC	1 cut(s)	261
MroXI	GAANNNNTTC	2 cut(s)	669, 1038
MseI	TTAA	1 cut(s)	56
MslI	CAYNNNNRTG	1 cut(s)	914
MspI	CCGG	1 cut(s)	842
MspR9I	CCNGG	2 cut(s)	504, 842
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	3 cut(s)	449, 555, 816
NciI	CCSGG	1 cut(s)	842
NdeII	GATC	6 cut(s)	161, 280, 521, 542, 858, 1088
NlaIV	GGNNCC	2 cut(s)	41, 744
NspI	RCATGY	2 cut(s)	776, 957
PagI	TCATGA	1 cut(s)	1009
PciSI	GCTCTTC	1 cut(s)	795
PdmI	GAANNNNTTC	2 cut(s)	669, 1038
PfeI	GAWTC	3 cut(s)	98, 382, 939
PflMI	CCANNNNNTGG	1 cut(s)	618
PkrI	GCNGC	3 cut(s)	269, 427, 442
Ple19I	CGATCG	1 cut(s)	861
PleI	GAGTC	5 cut(s)	12, 112, 241, 463, 759
PpsI	GAGTC	5 cut(s)	12, 112, 241, 463, 759
PpuMI	RGGWCCY	1 cut(s)	743
Psp5II	RGGWCCY	1 cut(s)	743
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	2 cut(s)	41, 744
PspPI	GGNCC	3 cut(s)	40, 743, 980
PspPPI	RGGWCCY	1 cut(s)	743
PsrI	GAACNNNNNNTAC	2 cut(s)	762, 794
PstI	CTGCAG	1 cut(s)	519
PsuI	RGATCY	3 cut(s)	161, 521, 1088
PvuI	CGATCG	1 cut(s)	861
RsaI	GTAC	2 cut(s)	501, 698
RsaNI	GTAC	2 cut(s)	500, 697
RseI	CAYNNNNRTG	1 cut(s)	914
SapI	GCTCTTC	1 cut(s)	795
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	3 cut(s)	268, 426, 441
Sau3AI	GATC	6 cut(s)	161, 280, 521, 542, 858, 1088
Sau96I	GGNCC	3 cut(s)	40, 743, 980
ScaI	AGTACT	1 cut(s)	698
SchI	GAGTC	5 cut(s)	13, 113, 242, 463, 760
ScrFI	CCNGG	2 cut(s)	504, 842
SfaNI	GCATC	6 cut(s)	130, 279, 651, 672, 936, 955
SfcI	CTRYAG	2 cut(s)	515, 792
SinI	GGWCC	2 cut(s)	743, 980
SmiMI	CAYNNNNRTG	1 cut(s)	914
SmlI	CTYRAG	3 cut(s)	89, 692, 1043
SmoI	CTYRAG	3 cut(s)	89, 692, 1043
Sse9I	AATT	5 cut(s)	371, 527, 724, 852, 992
SspMI	CTAG	7 cut(s)	158, 257, 326, 449, 546, 572, 900
StyD4I	CCNGG	2 cut(s)	502, 840
StyI	CCWWGG	2 cut(s)	157, 612
TaaI	ACNGT	2 cut(s)	935, 1058
TaqI	TCGA	4 cut(s)	380, 392, 673, 861
TasI	AATT	5 cut(s)	371, 527, 724, 852, 992
TatI	WGTACW	1 cut(s)	696
TfiI	GAWTC	3 cut(s)	98, 382, 939
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	519
TseI	GCWGC	3 cut(s)	267, 425, 440
TspDTI	ATGAA	2 cut(s)	38, 143
TspRI	CASTG	1 cut(s)	519
Van91I	CCANNNNNTGG	1 cut(s)	618
VpaK11BI	GGWCC	2 cut(s)	743, 980
XapI	RAATTY	1 cut(s)	992
XceI	RCATGY	2 cut(s)	776, 957
XmaJI	CCTAGG	1 cut(s)	157
XmnI	GAANNNNTTC	2 cut(s)	669, 1038
XspI	CTAG	7 cut(s)	158, 257, 326, 449, 546, 572, 900
ZrmI	AGTACT	1 cut(s)	698

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.