Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012371

Physical Location & Seq

Genomic Coordinates Reverse (-)

6726191 .. 6729665

Gene Structure 3475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g05970.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGGCCGGGTCAAGTTATTCTCTAGCACAGTGCTCATTCCCTTGCAAAACGCACCGTTTGGTACCATAACCCGGACATCAAATTCCCATTTCCATCTGATCGGCACTGGCCTGCTCCTTCCCAACGTCCCCAAATCGAACCCCAGTCGCGTCGAAGAAGACCCATCGACTCAGCTGTCACCGGCAATGGCTGCGATCCTAGCTCGGAAATCTCTCCAGGCTCTCCGCGCCAGACAGCTCGCTGTACCAGGGCAAGCATTGCAGGGTTCTTCCTACTATGGACTGCGATCCACTTCACAACACTTCTCCACTATAAAAGAGGATGAGGAAAGAGAGCAACTCGCAAAGGAGATCTCCAAGGATTGGAGTTCTGTTTTTGATCGAAGCATAAACACATTATTCCTCACTGAAATGGTTCGAGGTTTGATGCTTACGCTCAAGTACTTTTTTGAGAAAAAAGTTACTATCAATTATCCTTTTGAGAAGGGCCCTTTGAGCCCTCGTTTTCGTGGTGAACATGCCCTAAGGCGATATCCTACGGGAGAAGAGCGTTGCATTGCTTGCAAGCTTTGTGAAGCTATCTGTCCTGCACAAGCAATTACAATTGAAGCTGAGGAACGAGAAGATGGTAGCCGTAGGACAACTAGGTACGACATTGATATGACAAAGTGCATCTACTGTGGATTCTGTCAAGAGGCATGTCCTGTTGATGCCATTGTCGAAGGGCCAAACTTCGAATTCTCAACAGAGACTCATGAGGAGCTTCTTTACGACAAGGAAAAGCTGCTGGAGAATGGAGACCGTTGGGAGACCGAGATTGCTGAGAACCTCAGATCCGAAAGTCTTTACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer4

Protein Analysis

285

Amino Acids

32.27

Weight (kDa)

5.87

Isoelectric Point (pI)

55.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16700 AT1G79010
fragaria_vesca	FvH4_5g29280
malus_domestica	MD05G1066300.v1.1 MD10G1076300.v1.1
prunus_persica	Prupe.8G096900_v2.0.a1 Prupe.8G096900_v2.0.a1
pyrus_communis	pycom05g05750 pycom10g05970
rosa_chinensis	RchiOBHm_Chr7g0222141
rosa_laevigata	RLG00000002089
rosa_multiflora	Rmu_sc0006951.1_g000002
rosa_roxburghii	Rroxscaffold_3G00237380
rosa_rugosa	Rorug07G0205700
rosa_samantha	Rh7AG346900 Rh7BG336800 Rh7CG364200 Rh7DG344900
rosa_wichuraiana	Rw7G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	175
Acc65I	GGTACC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	62
AccB7I	CCANNNNNTGG	1 cut(s)	363
AccII	CGCG	2 cut(s)	150, 228
AciI	CCGC	2 cut(s)	226, 850
AclWI	GGATC	3 cut(s)	190, 282, 828
AcsI	RAATTY	2 cut(s)	82, 737
AfaI	GTAC	4 cut(s)	64, 246, 443, 650
AfiI	CCNNNNNNNGG	2 cut(s)	72, 363
AgsI	TTSAA	1 cut(s)	608
AjnI	CCWGG	2 cut(s)	216, 247
AloI	GAACNNNNNNTCC	2 cut(s)	818, 850
AluBI	AGCT	8 cut(s)	175, 203, 238, 568, 578, 611, 763, 784
AluI	AGCT	8 cut(s)	175, 203, 238, 568, 578, 611, 763, 784
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	3 cut(s)	743, 792, 803
AlwI	GGATC	3 cut(s)	190, 282, 828
AoxI	GGCC	4 cut(s)	4, 109, 487, 725
ApaI	GGGCCC	1 cut(s)	491
ApeKI	GCWGC	2 cut(s)	191, 784
ApoI	RAATTY	2 cut(s)	82, 737
Asp700I	GAANNNNTTC	1 cut(s)	414
Asp718I	GGTACC	1 cut(s)	62
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	4 cut(s)	4, 487, 488, 725
AsuC2I	CCSGG	2 cut(s)	8, 73
AsuHPI	GGTGA	2 cut(s)	171, 524
AsuII	TTCGAA	1 cut(s)	735
AxyI	CCTNAGG	1 cut(s)	524
BaeGI	GKGCMC	1 cut(s)	491
BanI	GGYRCC	1 cut(s)	62
BanII	GRGCYC	2 cut(s)	491, 500
BbsI	GAAGAC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	36
BbvCI	CCTCAGC	1 cut(s)	612
BbvI	GCAGC	2 cut(s)	178, 771
BccI	CCATC	3 cut(s)	102, 172, 620
BceAI	ACGGC	1 cut(s)	618
BciT130I	CCWGG	2 cut(s)	218, 249
BcnI	CCSGG	2 cut(s)	8, 73
BcoDI	GTCTC	3 cut(s)	743, 792, 803
BfaI	CTAG	3 cut(s)	24, 200, 645
BglII	AGATCT	1 cut(s)	351
BisI	GCNGC	2 cut(s)	192, 785
BlsI	GCNGC	2 cut(s)	193, 786
BmcAI	AGTACT	1 cut(s)	443
Bme1390I	CCNGG	4 cut(s)	8, 73, 218, 249
BmgT120I	GGNCC	4 cut(s)	4, 487, 488, 725
BmiI	GGNNCC	2 cut(s)	64, 489
BmrFI	CCNGG	4 cut(s)	8, 73, 218, 249
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	3 cut(s)	417, 681, 700
BmuI	ACTGGG	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	165
BplI	GAGNNNNNCTC	2 cut(s)	324, 356
BpmI	CTGGAG	2 cut(s)	200, 809
Bpu10I	CCTNAGC	1 cut(s)	612
Bpu14I	TTCGAA	1 cut(s)	735
BpuEI	CTTGAG	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	8, 73
BsaI	GGTCTC	2 cut(s)	792, 803
BsaJI	CCNNGG	2 cut(s)	248, 357
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 363
Bse118I	RCCGGY	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	112, 144
Bse21I	CCTNAGG	1 cut(s)	524
Bse3DI	GCAATG	3 cut(s)	192, 257, 555
BseBI	CCWGG	2 cut(s)	218, 249
BseDI	CCNNGG	2 cut(s)	248, 357
BseGI	GGATG	1 cut(s)	328
BseLI	CCNNNNNNNGG	2 cut(s)	72, 363
BseMI	GCAATG	3 cut(s)	192, 257, 555
BseMII	CTCAG	4 cut(s)	185, 603, 813, 844
BseNI	ACTGG	2 cut(s)	112, 144
BseRI	GAGGAG	1 cut(s)	773
BseSI	GKGCMC	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	178, 771
BsgI	GTGCAG	1 cut(s)	573
Bsh1236I	CGCG	2 cut(s)	150, 228
BshFI	GGCC	4 cut(s)	6, 111, 489, 727
BshNI	GGYRCC	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	36
BsiSI	CCGG	3 cut(s)	7, 73, 182
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	72, 363
BsmAI	GTCTC	3 cut(s)	743, 792, 803
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	4 cut(s)	6, 111, 489, 727
Bso31I	GGTCTC	2 cut(s)	792, 803
Bsp119I	TTCGAA	1 cut(s)	735
Bsp120I	GGGCCC	1 cut(s)	487
Bsp1286I	GDGCHC	3 cut(s)	36, 491, 500
Bsp143I	GATC	6 cut(s)	99, 195, 287, 351, 379, 833
BspACI	CCGC	2 cut(s)	226, 850
BspANI	GGCC	4 cut(s)	6, 111, 489, 727
BspCNI	CTCAG	4 cut(s)	184, 604, 814, 843
BspFNI	CGCG	2 cut(s)	150, 228
BspHI	TCATGA	1 cut(s)	754
BspLI	GGNNCC	2 cut(s)	64, 489
BspPI	GGATC	3 cut(s)	190, 282, 828
BspQI	GCTCTTC	1 cut(s)	540
BspT104I	TTCGAA	1 cut(s)	735
BspT107I	GGYRCC	1 cut(s)	62
BspTNI	GGTCTC	2 cut(s)	792, 803
BsrDI	GCAATG	3 cut(s)	192, 257, 555
BsrFI	RCCGGY	1 cut(s)	181
BsrI	ACTGG	2 cut(s)	112, 144
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	248, 357
BssMI	GATC	6 cut(s)	99, 195, 287, 351, 379, 833
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	2 cut(s)	218, 249
Bst4CI	ACNGT	4 cut(s)	31, 57, 680, 803
Bst6I	CTCTTC	1 cut(s)	540
BstAPI	GCANNNNNTGC	3 cut(s)	191, 259, 561
BstBI	TTCGAA	1 cut(s)	735
BstC8I	GCNNGC	5 cut(s)	113, 240, 255, 562, 566
BstDEI	CTNAG	5 cut(s)	171, 524, 612, 822, 830
BstF5I	GGATG	1 cut(s)	328
BstFNI	CGCG	2 cut(s)	150, 228
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	6 cut(s)	102, 198, 290, 354, 382, 836
BstMAI	GTCTC	3 cut(s)	743, 792, 803
BstMBI	GATC	6 cut(s)	99, 195, 287, 351, 379, 833
BstMWI	GCNNNNNNNGC	6 cut(s)	191, 200, 227, 259, 495, 561
BstNI	CCWGG	2 cut(s)	218, 249
BstNSI	RCATGY	2 cut(s)	521, 702
BstSCI	CCNGG	4 cut(s)	6, 71, 216, 247
BstSLI	GKGCMC	1 cut(s)	491
BstUI	CGCG	2 cut(s)	150, 228
BstV1I	GCAGC	2 cut(s)	178, 771
BstV2I	GAAGAC	1 cut(s)	165
BstX2I	RGATCY	2 cut(s)	351, 833
BstYI	RGATCY	2 cut(s)	351, 833
Bsu36I	CCTNAGG	1 cut(s)	524
BsuRI	GGCC	4 cut(s)	6, 111, 489, 727
BtsCI	GGATG	1 cut(s)	328
BtsIMutI	CAGTG	3 cut(s)	36, 105, 405
Cac8I	GCNNGC	5 cut(s)	113, 240, 255, 562, 566
CciI	TCATGA	1 cut(s)	754
CfoI	GCGC	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	181
Cfr13I	GGNCC	4 cut(s)	4, 487, 488, 725
CseI	GACGC	1 cut(s)	139
Csp6I	GTAC	4 cut(s)	63, 245, 442, 649
CviAII	CATG	3 cut(s)	518, 699, 755
CviQI	GTAC	4 cut(s)	63, 245, 442, 649
DdeI	CTNAG	5 cut(s)	171, 524, 612, 822, 830
DpnI	GATC	6 cut(s)	101, 197, 289, 353, 381, 835
DpnII	GATC	6 cut(s)	99, 195, 287, 351, 379, 833
DrdI	GACNNNNNNGTC	1 cut(s)	175
DseDI	GACNNNNNNGTC	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	2 cut(s)	491, 500
Eco31I	GGTCTC	2 cut(s)	792, 803
Eco32I	GATATC	1 cut(s)	533
Eco81I	CCTNAGG	1 cut(s)	524
EcoO109I	RGGNCCY	2 cut(s)	487, 488
EcoRI	GAATTC	1 cut(s)	737
EcoRII	CCWGG	2 cut(s)	216, 247
EcoRV	GATATC	1 cut(s)	533
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	2 cut(s)	491, 500
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	3 cut(s)	521, 702, 758
FaiI	YATR	8 cut(s)	68, 279, 314, 389, 519, 662, 700, 756
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	3 cut(s)	517, 698, 754
Fnu4HI	GCNGC	2 cut(s)	192, 785
FokI	GGATG	1 cut(s)	335
FriOI	GRGCYC	2 cut(s)	491, 500
Fsp4HI	GCNGC	2 cut(s)	192, 785
FspBI	CTAG	3 cut(s)	24, 200, 645
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	2 cut(s)	192, 785
GsuI	CTGGAG	2 cut(s)	200, 809
HaeIII	GGCC	4 cut(s)	6, 111, 489, 727
HapII	CCGG	3 cut(s)	7, 73, 182
HgaI	GACGC	1 cut(s)	139
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	3 cut(s)	521, 702, 758
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HindIII	AAGCTT	1 cut(s)	566
HinfI	GANTC	3 cut(s)	169, 684, 751
HpaII	CCGG	3 cut(s)	7, 73, 182
HphI	GGTGA	2 cut(s)	171, 524
Hpy166II	GTNNAC	1 cut(s)	515
Hpy188I	TCNGA	4 cut(s)	99, 207, 833, 838
Hpy188III	TCNNGA	2 cut(s)	692, 755
Hpy8I	GTNNAC	1 cut(s)	515
Hpy99I	CGWCG	1 cut(s)	155
HpyAV	CCTTC	3 cut(s)	128, 478, 716
HpyCH4III	ACNGT	4 cut(s)	31, 57, 680, 803
HpyCH4IV	ACGT	1 cut(s)	126
HpyCH4V	TGCA	6 cut(s)	46, 262, 555, 564, 590, 672
HpyF10VI	GCNNNNNNNGC	6 cut(s)	191, 200, 227, 259, 495, 561
HpyF3I	CTNAG	5 cut(s)	171, 524, 612, 822, 830
HpySE526I	ACGT	1 cut(s)	126
Hsp92II	CATG	3 cut(s)	521, 702, 758
HspAI	GCGC	1 cut(s)	228
KpnI	GGTACC	1 cut(s)	66
Kzo9I	GATC	6 cut(s)	99, 195, 287, 351, 379, 833
LguI	GCTCTTC	1 cut(s)	540
LmnI	GCTCC	2 cut(s)	120, 760
Lsp1109I	GCAGC	2 cut(s)	178, 771
LweI	GCATC	3 cut(s)	417, 681, 700
MaeI	CTAG	3 cut(s)	24, 200, 645
MaeII	ACGT	1 cut(s)	126
MaeIII	GTNAC	2 cut(s)	177, 460
MalI	GATC	6 cut(s)	101, 197, 289, 353, 381, 835
MboI	GATC	6 cut(s)	99, 195, 287, 351, 379, 833
MboII	GAAGA	5 cut(s)	167, 170, 261, 557, 635
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	2 cut(s)	351, 833
MhlI	GDGCHC	3 cut(s)	36, 491, 500
MluCI	AATT	5 cut(s)	82, 469, 597, 603, 737
MlyI	GAGTC	2 cut(s)	163, 745
MnlI	CCTC	9 cut(s)	313, 319, 413, 413, 510, 607, 688, 751, 839
MroXI	GAANNNNTTC	1 cut(s)	414
MslI	CAYNNNNRTG	2 cut(s)	410, 659
MspA1I	CMGCKG	2 cut(s)	175, 852
MspI	CCGG	3 cut(s)	7, 73, 182
MspR9I	CCNGG	4 cut(s)	8, 73, 218, 249
MunI	CAATTG	1 cut(s)	603
MvaI	CCWGG	2 cut(s)	218, 249
MvnI	CGCG	2 cut(s)	150, 228
MwoI	GCNNNNNNNGC	6 cut(s)	191, 200, 227, 259, 495, 561
NciI	CCSGG	2 cut(s)	8, 73
NdeII	GATC	6 cut(s)	99, 195, 287, 351, 379, 833
NlaIII	CATG	3 cut(s)	521, 702, 758
NlaIV	GGNNCC	2 cut(s)	64, 489
NmuCI	GTSAC	1 cut(s)	177
NspI	RCATGY	2 cut(s)	521, 702
NspV	TTCGAA	1 cut(s)	735
PagI	TCATGA	1 cut(s)	754
PciSI	GCTCTTC	1 cut(s)	540
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	1 cut(s)	684
PflMI	CCANNNNNTGG	1 cut(s)	363
PkrI	GCNGC	2 cut(s)	193, 786
PleI	GAGTC	2 cut(s)	163, 745
PpsI	GAGTC	2 cut(s)	163, 745
Psp6I	CCWGG	2 cut(s)	216, 247
PspGI	CCWGG	2 cut(s)	216, 247
PspN4I	GGNNCC	2 cut(s)	64, 489
PspOMI	GGGCCC	1 cut(s)	487
PspPI	GGNCC	4 cut(s)	4, 487, 488, 725
PsuI	RGATCY	2 cut(s)	351, 833
PvuII	CAGCTG	1 cut(s)	175
RsaI	GTAC	4 cut(s)	64, 246, 443, 650
RsaNI	GTAC	4 cut(s)	63, 245, 442, 649
RseI	CAYNNNNRTG	2 cut(s)	410, 659
SapI	GCTCTTC	1 cut(s)	540
SatI	GCNGC	2 cut(s)	192, 785
Sau3AI	GATC	6 cut(s)	99, 195, 287, 351, 379, 833
Sau96I	GGNCC	4 cut(s)	4, 487, 488, 725
ScaI	AGTACT	1 cut(s)	443
SchI	GAGTC	2 cut(s)	163, 745
ScrFI	CCNGG	4 cut(s)	8, 73, 218, 249
SduI	GDGCHC	3 cut(s)	36, 491, 500
SfaNI	GCATC	3 cut(s)	417, 681, 700
SfuI	TTCGAA	1 cut(s)	735
SmiMI	CAYNNNNRTG	2 cut(s)	410, 659
SmlI	CTYRAG	1 cut(s)	437
SmoI	CTYRAG	1 cut(s)	437
Sse9I	AATT	5 cut(s)	82, 469, 597, 603, 737
SsiI	CCGC	2 cut(s)	226, 850
SspMI	CTAG	3 cut(s)	24, 200, 645
StyD4I	CCNGG	4 cut(s)	6, 71, 216, 247
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	4 cut(s)	31, 57, 680, 803
TaiI	ACGT	1 cut(s)	129
TaqI	TCGA	7 cut(s)	137, 153, 167, 382, 418, 720, 735
TaqII	GACCGA	1 cut(s)	827
TasI	AATT	5 cut(s)	82, 469, 597, 603, 737
TatI	WGTACW	1 cut(s)	441
TfiI	GAWTC	1 cut(s)	684
TscAI	CASTG	3 cut(s)	36, 112, 412
TseFI	GTSAC	1 cut(s)	177
TseI	GCWGC	2 cut(s)	191, 784
Tsp45I	GTSAC	1 cut(s)	177
TspRI	CASTG	3 cut(s)	36, 112, 412
Van91I	CCANNNNNTGG	1 cut(s)	363
XapI	RAATTY	2 cut(s)	82, 737
XceI	RCATGY	2 cut(s)	521, 702
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	3 cut(s)	24, 200, 645
ZrmI	AGTACT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.