Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012371

Physical Location & Seq

Genomic Coordinates Reverse (-)

29724796 .. 29727028

Gene Structure 2233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G79010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGCTTCGATTTTGGCTCGCAGGTCACTGAATACTCTCCGTGCTCGACATCTCGTTTTGTCAGGGCAAGCTTTACAGGGATCTCATCTGTCTAGACTGCAGTCCCGTGGTATATCTTATGGCAGCAACAAAGATGATGAAGAAGCAGAGCAACTTTCTAAGGAAATCTCCAAGGACTGGAATACTGTCTTTGAACGGAGCATAAACACCCTGTTCCTCACAGAAATGGTCCGCGGTTTGTCGCTGACCCTCAAGTACTTCTTTGATCCAAAAGTTACTATCAATTATCCATTTGAGAAGGGTCCTCTGAGCCCTCGCTTCCGTGGTGAACATGCTCTTCGAAGATATCCTACCGGGGAAGAACGCTGCATTGCCTGCAAACTCTGTGAAGCTGTATGTCCAGCTCAAGCAATCACAATAGAGGCAGAAGAGAGGGAAGATGGAAGCCGCAGAACCACTAGGTACGATATCGACATGACAAAATGCATCTACTGTGGTTTCTGCCAAGAAGCTTGCCCCGTTGATGCAATCGTTGAAGGACCTAACTTTGAATTCGCAACCGAGACACACGAGGAACTTCTCTATGACAAAGAGAAGCTTCTTGAGAATGGAGATCGATGGGAGACAGAGATTGCTGAGAATCTGAGGTCGGAGAGTCTCTACCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0016020 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0046872 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer4

Protein Analysis

222

Amino Acids

25.5

Weight (kDa)

5.32

Isoelectric Point (pI)

58.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Fer4	PF00037	120 - 139	5.3e-06	4Fe-4S binding domain
Fer4_10	PF13237	120 - 173	3.7e-06	4Fe-4S dicluster domain
Fer4_7	PF12838	122 - 176	6.4e-13	4Fe-4S dicluster domain
Fer4_9	PF13187	122 - 177	6.5e-08	4Fe-4S dicluster domain
Fer4	PF00037	156 - 177	2.4e-08	4Fe-4S binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012371)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G16700 AT1G79010
fragaria_vesca	FvH4_5g29280
malus_domestica	MD05G1066300.v1.1 MD10G1076300.v1.1
prunus_persica	Prupe.8G096900_v2.0.a1 Prupe.8G096900_v2.0.a1
pyrus_communis	pycom05g05750 pycom10g05970
rosa_chinensis	RchiOBHm_Chr7g0222141
rosa_laevigata	RLG00000002089
rosa_multiflora	Rmu_sc0006951.1_g000002
rosa_roxburghii	Rroxscaffold_3G00237380
rosa_rugosa	Rorug07G0205700
rosa_samantha	Rh7AG346900 Rh7BG336800 Rh7CG364200 Rh7DG344900
rosa_wichuraiana	Rw7G029380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	12
AccB7I	CCANNNNNTGG	1 cut(s)	177
AccII	CGCG	1 cut(s)	234
AciI	CCGC	4 cut(s)	232, 234, 448, 664
AclWI	GGATC	2 cut(s)	88, 260
AcsI	RAATTY	1 cut(s)	551
AfaI	GTAC	2 cut(s)	257, 464
AfiI	CCNNNNNNNGG	1 cut(s)	177
AgsI	TTSAA	3 cut(s)	194, 536, 551
AluBI	AGCT	5 cut(s)	71, 392, 404, 512, 598
AluI	AGCT	5 cut(s)	71, 392, 404, 512, 598
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	3 cut(s)	557, 617, 662
AlwI	GGATC	2 cut(s)	88, 260
ApeKI	GCWGC	2 cut(s)	123, 366
ApoI	RAATTY	1 cut(s)	551
AspS9I	GGNCC	3 cut(s)	229, 302, 539
AsuC2I	CCSGG	1 cut(s)	355
AsuHPI	GGTGA	1 cut(s)	338
AsuII	TTCGAA	1 cut(s)	340
AvaII	GGWCC	3 cut(s)	229, 302, 539
BanII	GRGCYC	1 cut(s)	314
BarI	GAAGNNNNNNTAC	2 cut(s)	334, 366
BauI	CACGAG	1 cut(s)	569
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	2 cut(s)	135, 353
BccI	CCATC	2 cut(s)	434, 612
BcnI	CCSGG	1 cut(s)	355
BcoDI	GTCTC	3 cut(s)	557, 617, 662
BfaI	CTAG	2 cut(s)	93, 459
BfmI	CTRYAG	1 cut(s)	98
BfuAI	ACCTGC	1 cut(s)	12
BisI	GCNGC	3 cut(s)	124, 367, 448
BlsI	GCNGC	3 cut(s)	125, 368, 449
BmcAI	AGTACT	1 cut(s)	257
Bme1390I	CCNGG	1 cut(s)	355
Bme18I	GGWCC	3 cut(s)	229, 302, 539
BmgT120I	GGNCC	3 cut(s)	229, 302, 539
BmiI	GGNNCC	1 cut(s)	303
BmrFI	CCNGG	1 cut(s)	355
BmsI	GCATC	2 cut(s)	495, 514
BoxI	GACNNNNGTC	1 cut(s)	100
Bpu14I	TTCGAA	1 cut(s)	340
BpuEI	CTTGAG	3 cut(s)	236, 390, 623
BpuMI	CCSGG	1 cut(s)	355
Bsa29I	ATCGAT	1 cut(s)	616
BsaJI	CCNNGG	5 cut(s)	106, 171, 232, 322, 354
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
Bse1I	ACTGG	1 cut(s)	182
Bse3DI	GCAATG	1 cut(s)	369
BseCI	ATCGAT	1 cut(s)	616
BseDI	CCNNGG	5 cut(s)	106, 171, 232, 322, 354
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseMI	GCAATG	1 cut(s)	369
BseMII	CTCAG	3 cut(s)	299, 627, 635
BseNI	ACTGG	1 cut(s)	182
BseXI	GCAGC	2 cut(s)	135, 353
Bsh1236I	CGCG	1 cut(s)	234
BshVI	ATCGAT	1 cut(s)	616
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	1 cut(s)	354
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmAI	GTCTC	3 cut(s)	557, 617, 662
BsmFI	GGGAC	1 cut(s)	88
Bsp119I	TTCGAA	1 cut(s)	340
Bsp1286I	GDGCHC	2 cut(s)	46, 314
Bsp143I	GATC	3 cut(s)	80, 265, 613
BspACI	CCGC	4 cut(s)	232, 234, 448, 664
BspCNI	CTCAG	3 cut(s)	300, 628, 636
BspDI	ATCGAT	1 cut(s)	616
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	303
BspMAI	CTGCAG	1 cut(s)	102
BspMI	ACCTGC	1 cut(s)	12
BspPI	GGATC	2 cut(s)	88, 260
BspQI	GCTCTTC	1 cut(s)	342
BspT104I	TTCGAA	1 cut(s)	340
BsrDI	GCAATG	1 cut(s)	369
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	5 cut(s)	106, 171, 232, 322, 354
BssMI	GATC	3 cut(s)	80, 265, 613
BssSI	CACGAG	1 cut(s)	569
BssT1I	CCWWGG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	569
Bst4CI	ACNGT	2 cut(s)	187, 494
Bst6I	CTCTTC	2 cut(s)	342, 423
BstAPI	GCANNNNNTGC	1 cut(s)	375
BstBI	TTCGAA	1 cut(s)	340
BstC8I	GCNNGC	4 cut(s)	19, 69, 376, 514
BstDEI	CTNAG	4 cut(s)	159, 308, 636, 644
BstDSI	CCRYGG	3 cut(s)	106, 232, 322
BstFNI	CGCG	1 cut(s)	234
BstKTI	GATC	3 cut(s)	83, 268, 616
BstMAI	GTCTC	3 cut(s)	557, 617, 662
BstMBI	GATC	3 cut(s)	80, 265, 613
BstMWI	GCNNNNNNNGC	1 cut(s)	375
BstNSI	RCATGY	1 cut(s)	335
BstPAI	GACNNNNGTC	1 cut(s)	100
BstSCI	CCNGG	1 cut(s)	353
BstSFI	CTRYAG	1 cut(s)	98
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	135, 353
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
Bsu15I	ATCGAT	1 cut(s)	616
BsuTUI	ATCGAT	1 cut(s)	616
BtgI	CCRYGG	3 cut(s)	106, 232, 322
BtsIMutI	CAGTG	1 cut(s)	26
BveI	ACCTGC	1 cut(s)	12
Cac8I	GCNNGC	4 cut(s)	19, 69, 376, 514
Cfr13I	GGNCC	3 cut(s)	229, 302, 539
Cfr42I	CCGCGG	1 cut(s)	235
ClaI	ATCGAT	1 cut(s)	616
Csp6I	GTAC	2 cut(s)	256, 463
CviAII	CATG	2 cut(s)	332, 475
CviJI	RGCY	9 cut(s)	5, 17, 71, 312, 392, 404, 447, 512, 598
CviKI_1	RGCY	9 cut(s)	5, 17, 71, 312, 392, 404, 447, 512, 598
CviQI	GTAC	2 cut(s)	256, 463
DdeI	CTNAG	4 cut(s)	159, 308, 636, 644
DpnI	GATC	3 cut(s)	82, 267, 615
DpnII	GATC	3 cut(s)	80, 265, 613
Eam1104I	CTCTTC	2 cut(s)	342, 423
EarI	CTCTTC	2 cut(s)	342, 423
Eco130I	CCWWGG	1 cut(s)	171
Eco24I	GRGCYC	1 cut(s)	314
Eco32I	GATATC	2 cut(s)	347, 469
Eco47I	GGWCC	3 cut(s)	229, 302, 539
EcoO109I	RGGNCCY	2 cut(s)	302, 539
EcoRI	GAATTC	1 cut(s)	551
EcoRV	GATATC	2 cut(s)	347, 469
EcoT14I	CCWWGG	1 cut(s)	171
EcoT22I	ATGCAT	1 cut(s)	488
EcoT38I	GRGCYC	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	2 cut(s)	335, 478
FaiI	YATR	7 cut(s)	113, 120, 203, 333, 397, 476, 585
FalI	AAGNNNNNCTT	4 cut(s)	245, 277, 582, 614
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	2 cut(s)	331, 474
Fnu4HI	GCNGC	3 cut(s)	124, 367, 448
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	3 cut(s)	124, 367, 448
FspBI	CTAG	2 cut(s)	93, 459
GluI	GCNGC	3 cut(s)	124, 367, 448
HapII	CCGG	1 cut(s)	354
Hin1II	CATG	2 cut(s)	335, 478
HindIII	AAGCTT	3 cut(s)	69, 510, 596
HinfI	GANTC	2 cut(s)	640, 655
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	1 cut(s)	338
Hpy166II	GTNNAC	1 cut(s)	329
Hpy188I	TCNGA	3 cut(s)	309, 645, 652
Hpy188III	TCNNGA	2 cut(s)	93, 602
Hpy8I	GTNNAC	1 cut(s)	329
HpyAV	CCTTC	2 cut(s)	292, 530
HpyCH4III	ACNGT	2 cut(s)	187, 494
HpyCH4V	TGCA	5 cut(s)	100, 369, 378, 486, 527
HpyF10VI	GCNNNNNNNGC	1 cut(s)	375
HpyF3I	CTNAG	4 cut(s)	159, 308, 636, 644
Hsp92II	CATG	2 cut(s)	335, 478
KspI	CCGCGG	1 cut(s)	235
Kzo9I	GATC	3 cut(s)	80, 265, 613
LguI	GCTCTTC	1 cut(s)	342
LmnI	GCTCC	1 cut(s)	198
LpnPI	CCDG	8 cut(s)	7, 48, 62, 163, 224, 367, 388, 414
Lsp1109I	GCAGC	2 cut(s)	135, 353
LweI	GCATC	2 cut(s)	495, 514
MaeI	CTAG	2 cut(s)	93, 459
MaeIII	GTNAC	2 cut(s)	24, 274
MalI	GATC	3 cut(s)	82, 267, 615
MboI	GATC	3 cut(s)	80, 265, 613
MboII	GAAGA	6 cut(s)	152, 329, 354, 371, 440, 449
MflI	RGATCY	1 cut(s)	80
MhlI	GDGCHC	2 cut(s)	46, 314
MluCI	AATT	2 cut(s)	283, 551
MlyI	GAGTC	1 cut(s)	664
MmeI	TCCRAC	1 cut(s)	630
MnlI	CCTC	8 cut(s)	227, 260, 315, 324, 415, 426, 565, 639
Mph1103I	ATGCAT	1 cut(s)	488
MslI	CAYNNNNRTG	1 cut(s)	224
MspA1I	CMGCKG	2 cut(s)	234, 666
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	1 cut(s)	355
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	1 cut(s)	375
NciI	CCSGG	1 cut(s)	355
NdeII	GATC	3 cut(s)	80, 265, 613
NlaIII	CATG	2 cut(s)	335, 478
NlaIV	GGNNCC	1 cut(s)	303
NmuCI	GTSAC	1 cut(s)	24
NsiI	ATGCAT	1 cut(s)	488
NspI	RCATGY	1 cut(s)	335
NspV	TTCGAA	1 cut(s)	340
PciSI	GCTCTTC	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	640
PflMI	CCANNNNNTGG	1 cut(s)	177
PkrI	GCNGC	3 cut(s)	125, 368, 449
PleI	GAGTC	1 cut(s)	663
PpsI	GAGTC	1 cut(s)	663
PpuMI	RGGWCCY	2 cut(s)	302, 539
PshAI	GACNNNNGTC	1 cut(s)	100
Psp5II	RGGWCCY	2 cut(s)	302, 539
PspN4I	GGNNCC	1 cut(s)	303
PspPI	GGNCC	3 cut(s)	229, 302, 539
PspPPI	RGGWCCY	2 cut(s)	302, 539
PstI	CTGCAG	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	80
RsaI	GTAC	2 cut(s)	257, 464
RsaNI	GTAC	2 cut(s)	256, 463
RseI	CAYNNNNRTG	1 cut(s)	224
SacII	CCGCGG	1 cut(s)	235
SapI	GCTCTTC	1 cut(s)	342
SatI	GCNGC	3 cut(s)	124, 367, 448
Sau3AI	GATC	3 cut(s)	80, 265, 613
Sau96I	GGNCC	3 cut(s)	229, 302, 539
ScaI	AGTACT	1 cut(s)	257
SchI	GAGTC	1 cut(s)	664
ScrFI	CCNGG	1 cut(s)	355
SduI	GDGCHC	2 cut(s)	46, 314
SetI	ASST	9 cut(s)	26, 73, 394, 406, 464, 514, 544, 600, 650
SfaNI	GCATC	2 cut(s)	495, 514
SfcI	CTRYAG	1 cut(s)	98
Sfr303I	CCGCGG	1 cut(s)	235
SfuI	TTCGAA	1 cut(s)	340
SgrBI	CCGCGG	1 cut(s)	235
SinI	GGWCC	3 cut(s)	229, 302, 539
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	3 cut(s)	251, 405, 602
SmoI	CTYRAG	3 cut(s)	251, 405, 602
Sse9I	AATT	2 cut(s)	283, 551
SsiI	CCGC	4 cut(s)	232, 234, 448, 664
SspMI	CTAG	2 cut(s)	93, 459
StyD4I	CCNGG	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	2 cut(s)	187, 494
TaqI	TCGA	5 cut(s)	8, 46, 340, 471, 616
TasI	AATT	2 cut(s)	283, 551
TatI	WGTACW	1 cut(s)	255
TauI	GCSGC	1 cut(s)	450
TfiI	GAWTC	1 cut(s)	640
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	2 cut(s)	123, 366
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	153
TspGWI	ACGGA	3 cut(s)	29, 211, 311
TspRI	CASTG	1 cut(s)	33
Van91I	CCANNNNNTGG	1 cut(s)	177
VpaK11BI	GGWCC	3 cut(s)	229, 302, 539
XapI	RAATTY	1 cut(s)	551
XbaI	TCTAGA	1 cut(s)	92
XceI	RCATGY	1 cut(s)	335
XspI	CTAG	2 cut(s)	93, 459
ZrmI	AGTACT	1 cut(s)	257
Zsp2I	ATGCAT	1 cut(s)	488

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.