SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G05130 |
| fragaria_vesca | FvH4_5g29290 |
| malus_domestica | MD15G1139300.v1.1 |
| prunus_persica | Prupe.7G028900_v2.0.a1 |
| pyrus_communis | pycom520g00520 |
| rosa_chinensis | RchiOBHm_Chr7g0222151 |
| rosa_laevigata | RLG00000002088 |
| rosa_multiflora | Rmu_sc0009183.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00237370 |
| rosa_rugosa | Rorug07G0205700 |
| rosa_samantha | Rh7BG336900 Rh7DG345000 |
| rosa_wichuraiana | Rw7G029390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1760 |
| Acc36I | ACCTGC | 1 cut(s) | 1567 |
| AccB1I | GGYRCC | 1 cut(s) | 179 |
| AccBSI | CCGCTC | 1 cut(s) | 1219 |
| AccI | GTMKAC | 1 cut(s) | 994 |
| AccII | CGCG | 5 cut(s) | 216, 299, 308, 367, 1015 |
| AclWI | GGATC | 3 cut(s) | 8, 2487, 2631 |
| AcoI | YGGCCR | 3 cut(s) | 190, 303, 2616 |
| AcsI | RAATTY | 4 cut(s) | 162, 331, 697, 2585 |
| AcuI | CTGAAG | 3 cut(s) | 873, 2009, 2376 |
| AcyI | GRCGYC | 1 cut(s) | 2059 |
| AfaI | GTAC | 3 cut(s) | 233, 1776, 1810 |
| AfeI | AGCGCT | 1 cut(s) | 2030 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 199, 439, 794, 2055, 2625 |
| AflII | CTTAAG | 1 cut(s) | 2384 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 100 |
| AjnI | CCWGG | 2 cut(s) | 1183, 2455 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 1936, 1968, 1995, 2027 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 669, 701 |
| Alw21I | GWGCWC | 2 cut(s) | 880, 1990 |
| Alw26I | GTCTC | 3 cut(s) | 108, 1646, 2666 |
| AlwI | GGATC | 3 cut(s) | 8, 2487, 2631 |
| Aor51HI | AGCGCT | 1 cut(s) | 2030 |
| AoxI | GGCC | 6 cut(s) | 33, 52, 190, 303, 1181, 2616 |
| ApeKI | GCWGC | 8 cut(s) | 1283, 1531, 1573, 1891, 1915, 2043, 2267, 2417 |
| ApoI | RAATTY | 4 cut(s) | 162, 331, 697, 2585 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 823, 855 |
| AseI | ATTAAT | 1 cut(s) | 1121 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1736 |
| AspLEI | GCGC | 6 cut(s) | 310, 316, 1536, 1761, 2031, 2289 |
| AspS9I | GGNCC | 2 cut(s) | 34, 53 |
| AsuC2I | CCSGG | 1 cut(s) | 1009 |
| AsuHPI | GGTGA | 7 cut(s) | 716, 956, 1109, 1226, 1688, 1937, 2480 |
| AsuII | TTCGAA | 2 cut(s) | 1856, 2230 |
| BaeGI | GKGCMC | 3 cut(s) | 1133, 1829, 2364 |
| BanI | GGYRCC | 1 cut(s) | 179 |
| BanII | GRGCYC | 2 cut(s) | 1566, 2323 |
| BbsI | GAAGAC | 2 cut(s) | 1083, 2136 |
| Bbv12I | GWGCWC | 2 cut(s) | 880, 1990 |
| BbvCI | CCTCAGC | 1 cut(s) | 1233 |
| BbvI | GCAGC | 8 cut(s) | 1270, 1543, 1560, 1878, 1902, 2030, 2279, 2404 |
| BccI | CCATC | 9 cut(s) | 191, 254, 672, 728, 1468, 1601, 1696, 1916, 2288 |
| BceAI | ACGGC | 3 cut(s) | 301, 1586, 2631 |
| BciT130I | CCWGG | 2 cut(s) | 1185, 2457 |
| BciVI | GTATCC | 2 cut(s) | 1885, 2134 |
| BclI | TGATCA | 2 cut(s) | 636, 1696 |
| BcnI | CCSGG | 1 cut(s) | 1009 |
| BcoDI | GTCTC | 3 cut(s) | 108, 1646, 2666 |
| BfaI | CTAG | 5 cut(s) | 926, 1047, 1166, 1179, 1224 |
| BfmI | CTRYAG | 2 cut(s) | 1574, 1647 |
| BfoI | RGCGCY | 2 cut(s) | 1537, 2032 |
| BfrI | CTTAAG | 1 cut(s) | 2384 |
| BfuAI | ACCTGC | 1 cut(s) | 1567 |
| BfuI | GTATCC | 2 cut(s) | 1885, 2134 |
| BglII | AGATCT | 1 cut(s) | 1803 |
| BlpI | GCTNAGC | 1 cut(s) | 1410 |
| Bme1390I | CCNGG | 3 cut(s) | 1009, 1185, 2457 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 100 |
| BmgT120I | GGNCC | 2 cut(s) | 34, 53 |
| BmiI | GGNNCC | 5 cut(s) | 181, 621, 786, 2442, 2453 |
| BmrFI | CCNGG | 3 cut(s) | 1009, 1185, 2457 |
| BmsI | GCATC | 7 cut(s) | 536, 1219, 1732, 1893, 2189, 2226, 2553 |
| BpiI | GAAGAC | 2 cut(s) | 1083, 2136 |
| BpmI | CTGGAG | 1 cut(s) | 1928 |
| Bpu10I | CCTNAGC | 2 cut(s) | 372, 1233 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1410 |
| Bpu14I | TTCGAA | 2 cut(s) | 1856, 2230 |
| BpuEI | CTTGAG | 2 cut(s) | 2079, 2307 |
| BpuMI | CCSGG | 1 cut(s) | 1009 |
| BsaHI | GRCGYC | 1 cut(s) | 2059 |
| BsaI | GGTCTC | 1 cut(s) | 2666 |
| BsaJI | CCNNGG | 5 cut(s) | 297, 1184, 2444, 2455, 2619 |
| BsaWI | WCCGGW | 1 cut(s) | 781 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2432, 2462 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 199, 439, 794, 2055, 2625 |
| Bse1I | ACTGG | 1 cut(s) | 1520 |
| Bse3DI | GCAATG | 1 cut(s) | 2481 |
| BseBI | CCWGG | 2 cut(s) | 1185, 2457 |
| BseDI | CCNNGG | 5 cut(s) | 297, 1184, 2444, 2455, 2619 |
| BseGI | GGATG | 8 cut(s) | 551, 565, 586, 683, 955, 1304, 1351, 2515 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 199, 439, 794, 2055, 2625 |
| BseMI | GCAATG | 1 cut(s) | 2481 |
| BseMII | CTCAG | 4 cut(s) | 528, 1023, 1224, 2100 |
| BseNI | ACTGG | 1 cut(s) | 1520 |
| BseRI | GAGGAG | 4 cut(s) | 76, 1250, 2082, 2644 |
| BseSI | GKGCMC | 3 cut(s) | 1133, 1829, 2364 |
| BseX3I | CGGCCG | 1 cut(s) | 303 |
| BseXI | GCAGC | 8 cut(s) | 1270, 1543, 1560, 1878, 1902, 2030, 2279, 2404 |
| BsgI | GTGCAG | 1 cut(s) | 1550 |
| Bsh1236I | CGCG | 5 cut(s) | 216, 299, 308, 367, 1015 |
| Bsh1285I | CGRYCG | 2 cut(s) | 306, 782 |
| BshFI | GGCC | 6 cut(s) | 35, 54, 192, 305, 1183, 2618 |
| BshNI | GGYRCC | 1 cut(s) | 179 |
| BsiEI | CGRYCG | 2 cut(s) | 306, 782 |
| BsiHKAI | GWGCWC | 2 cut(s) | 880, 1990 |
| BsiSI | CCGG | 2 cut(s) | 782, 1008 |
| BsiWI | CGTACG | 1 cut(s) | 231 |
| BslFI | GGGAC | 4 cut(s) | 1635, 2364, 2648, 2653 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 199, 439, 794, 2055, 2625 |
| BsmAI | GTCTC | 3 cut(s) | 108, 1646, 2666 |
| BsmFI | GGGAC | 4 cut(s) | 1635, 2364, 2648, 2653 |
| BsmI | GAATGC | 3 cut(s) | 592, 1378, 2311 |
| BsnI | GGCC | 6 cut(s) | 35, 54, 192, 305, 1183, 2618 |
| Bso31I | GGTCTC | 1 cut(s) | 2666 |
| Bsp119I | TTCGAA | 2 cut(s) | 1856, 2230 |
| Bsp1286I | GDGCHC | 7 cut(s) | 880, 1133, 1566, 1829, 1990, 2323, 2364 |
| Bsp143I | GATC | 9 cut(s) | 13, 40, 636, 1696, 1803, 1834, 2479, 2623, 2650 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1410 |
| Bsp19I | CCATGG | 1 cut(s) | 2444 |
| Bsp68I | TCGCGA | 1 cut(s) | 1015 |
| BspANI | GGCC | 6 cut(s) | 35, 54, 192, 305, 1183, 2618 |
| BspCNI | CTCAG | 4 cut(s) | 529, 1024, 1225, 2099 |
| BspFNI | CGCG | 5 cut(s) | 216, 299, 308, 367, 1015 |
| BspLI | GGNNCC | 5 cut(s) | 181, 621, 786, 2442, 2453 |
| BspMAI | CTGCAG | 1 cut(s) | 1578 |
| BspMI | ACCTGC | 1 cut(s) | 1567 |
| BspPI | GGATC | 3 cut(s) | 8, 2487, 2631 |
| BspQI | GCTCTTC | 3 cut(s) | 32, 885, 2247 |
| BspT104I | TTCGAA | 2 cut(s) | 1856, 2230 |
| BspT107I | GGYRCC | 1 cut(s) | 179 |
| BspTI | CTTAAG | 1 cut(s) | 2384 |
| BspTNI | GGTCTC | 1 cut(s) | 2666 |
| BsrBI | CCGCTC | 1 cut(s) | 1219 |
| BsrDI | GCAATG | 1 cut(s) | 2481 |
| BsrI | ACTGG | 1 cut(s) | 1520 |
| BssECI | CCNNGG | 5 cut(s) | 297, 1184, 2444, 2455, 2619 |
| BssMI | GATC | 9 cut(s) | 13, 40, 636, 1696, 1803, 1834, 2479, 2623, 2650 |
| BssNI | GRCGYC | 1 cut(s) | 2059 |
| BssT1I | CCWWGG | 2 cut(s) | 2444, 2619 |
| Bst2UI | CCWGG | 2 cut(s) | 1185, 2457 |
| Bst4CI | ACNGT | 7 cut(s) | 1671, 1692, 1774, 1940, 2073, 2111, 2492 |
| Bst6I | CTCTTC | 6 cut(s) | 32, 115, 720, 885, 2247, 2544 |
| BstACI | GRCGYC | 1 cut(s) | 2059 |
| BstAFI | CTTAAG | 1 cut(s) | 2384 |
| BstBI | TTCGAA | 2 cut(s) | 1856, 2230 |
| BstC8I | GCNNGC | 6 cut(s) | 312, 369, 592, 923, 2376, 2422 |
| BstDEI | CTNAG | 9 cut(s) | 372, 537, 791, 1032, 1233, 1410, 1778, 2086, 2290 |
| BstDSI | CCRYGG | 2 cut(s) | 297, 2444 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 792 |
| BstF5I | GGATG | 8 cut(s) | 551, 565, 586, 683, 955, 1304, 1351, 2515 |
| BstFNI | CGCG | 5 cut(s) | 216, 299, 308, 367, 1015 |
| BstH2I | RGCGCY | 2 cut(s) | 1537, 2032 |
| BstHHI | GCGC | 6 cut(s) | 310, 316, 1536, 1761, 2031, 2289 |
| BstKTI | GATC | 9 cut(s) | 16, 43, 639, 1699, 1806, 1837, 2482, 2626, 2653 |
| BstMAI | GTCTC | 3 cut(s) | 108, 1646, 2666 |
| BstMBI | GATC | 9 cut(s) | 13, 40, 636, 1696, 1803, 1834, 2479, 2623, 2650 |
| BstMCI | CGRYCG | 2 cut(s) | 306, 782 |
| BstNI | CCWGG | 2 cut(s) | 1185, 2457 |
| BstNSI | RCATGY | 2 cut(s) | 133, 925 |
| BstSCI | CCNGG | 3 cut(s) | 1007, 1183, 2455 |
| BstSFI | CTRYAG | 2 cut(s) | 1574, 1647 |
| BstSLI | GKGCMC | 3 cut(s) | 1133, 1829, 2364 |
| BstUI | CGCG | 5 cut(s) | 216, 299, 308, 367, 1015 |
| BstV1I | GCAGC | 8 cut(s) | 1270, 1543, 1560, 1878, 1902, 2030, 2279, 2404 |
| BstV2I | GAAGAC | 2 cut(s) | 1083, 2136 |
| BstX2I | RGATCY | 2 cut(s) | 13, 1803 |
| BstYI | RGATCY | 2 cut(s) | 13, 1803 |
| BstZI | CGGCCG | 1 cut(s) | 303 |
| BsuI | GTATCC | 2 cut(s) | 1885, 2134 |
| BsuRI | GGCC | 6 cut(s) | 35, 54, 192, 305, 1183, 2618 |
| BtgI | CCRYGG | 2 cut(s) | 297, 2444 |
| BtsCI | GGATG | 8 cut(s) | 551, 565, 586, 683, 955, 1304, 1351, 2515 |
| BtsI | GCAGTG | 2 cut(s) | 519, 910 |
| BtsIMutI | CAGTG | 7 cut(s) | 50, 193, 519, 768, 910, 2116, 2258 |
| BtuMI | TCGCGA | 1 cut(s) | 1015 |
| BveI | ACCTGC | 1 cut(s) | 1567 |
| Cac8I | GCNNGC | 6 cut(s) | 312, 369, 592, 923, 2376, 2422 |
| CciNI | GCGGCCGC | 1 cut(s) | 303 |
| CfoI | GCGC | 6 cut(s) | 310, 316, 1536, 1761, 2031, 2289 |
| Cfr13I | GGNCC | 2 cut(s) | 34, 53 |
| Cfr42I | CCGCGG | 1 cut(s) | 300 |
| CseI | GACGC | 2 cut(s) | 480, 2048 |
| Csp6I | GTAC | 3 cut(s) | 232, 1775, 1809 |
| CviQI | GTAC | 3 cut(s) | 232, 1775, 1809 |
| DdeI | CTNAG | 9 cut(s) | 372, 537, 791, 1032, 1233, 1410, 1778, 2086, 2290 |
| DpnI | GATC | 9 cut(s) | 15, 42, 638, 1698, 1805, 1836, 2481, 2625, 2652 |
| DpnII | GATC | 9 cut(s) | 13, 40, 636, 1696, 1803, 1834, 2479, 2623, 2650 |
| DriI | GACNNNNNGTC | 1 cut(s) | 100 |
| EaeI | YGGCCR | 3 cut(s) | 190, 303, 2616 |
| EagI | CGGCCG | 1 cut(s) | 303 |
| Eam1104I | CTCTTC | 6 cut(s) | 32, 115, 720, 885, 2247, 2544 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 100 |
| EarI | CTCTTC | 6 cut(s) | 32, 115, 720, 885, 2247, 2544 |
| EclXI | CGGCCG | 1 cut(s) | 303 |
| Eco130I | CCWWGG | 2 cut(s) | 2444, 2619 |
| Eco24I | GRGCYC | 2 cut(s) | 1566, 2323 |
| Eco31I | GGTCTC | 1 cut(s) | 2666 |
| Eco32I | GATATC | 1 cut(s) | 1102 |
| Eco47III | AGCGCT | 1 cut(s) | 2030 |
| Eco52I | CGGCCG | 1 cut(s) | 303 |
| Eco57I | CTGAAG | 3 cut(s) | 873, 2009, 2376 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 792 |
| EcoO109I | RGGNCCY | 1 cut(s) | 53 |
| EcoRI | GAATTC | 2 cut(s) | 162, 697 |
| EcoRII | CCWGG | 2 cut(s) | 1183, 2455 |
| EcoRV | GATATC | 1 cut(s) | 1102 |
| EcoT14I | CCWWGG | 2 cut(s) | 2444, 2619 |
| EcoT38I | GRGCYC | 2 cut(s) | 1566, 2323 |
| ErhI | CCWWGG | 2 cut(s) | 2444, 2619 |
| FaqI | GGGAC | 4 cut(s) | 1635, 2364, 2648, 2653 |
| FauI | CCCGC | 1 cut(s) | 1326 |
| FbaI | TGATCA | 2 cut(s) | 636, 1696 |
| FblI | GTMKAC | 1 cut(s) | 994 |
| FokI | GGATG | 8 cut(s) | 558, 572, 593, 690, 962, 1291, 1358, 2522 |
| FriOI | GRGCYC | 2 cut(s) | 1566, 2323 |
| FspBI | CTAG | 5 cut(s) | 926, 1047, 1166, 1179, 1224 |
| FspI | TGCGCA | 1 cut(s) | 1760 |
| GlaI | GCGC | 6 cut(s) | 309, 315, 1535, 1760, 2030, 2288 |
| GsuI | CTGGAG | 1 cut(s) | 1928 |
| HaeII | RGCGCY | 2 cut(s) | 1537, 2032 |
| HaeIII | GGCC | 6 cut(s) | 35, 54, 192, 305, 1183, 2618 |
| HapII | CCGG | 2 cut(s) | 782, 1008 |
| HgaI | GACGC | 2 cut(s) | 480, 2048 |
| HhaI | GCGC | 6 cut(s) | 310, 316, 1536, 1761, 2031, 2289 |
| Hin1I | GRCGYC | 1 cut(s) | 2059 |
| Hin6I | GCGC | 6 cut(s) | 308, 314, 1534, 1759, 2029, 2287 |
| HinP1I | GCGC | 6 cut(s) | 308, 314, 1534, 1759, 2029, 2287 |
| HincII | GTYRAC | 2 cut(s) | 756, 1263 |
| HindII | GTYRAC | 2 cut(s) | 756, 1263 |
| HindIII | AAGCTT | 3 cut(s) | 1522, 2004, 2598 |
| HinfI | GANTC | 8 cut(s) | 95, 236, 326, 391, 443, 458, 482, 2427 |
| HpaII | CCGG | 2 cut(s) | 782, 1008 |
| HphI | GGTGA | 7 cut(s) | 716, 956, 1109, 1226, 1688, 1937, 2480 |
| Hpy166II | GTNNAC | 9 cut(s) | 406, 467, 658, 688, 756, 995, 1263, 1688, 2488 |
| Hpy188III | TCNNGA | 5 cut(s) | 1014, 1444, 2249, 2278, 2394 |
| Hpy8I | GTNNAC | 9 cut(s) | 406, 467, 658, 688, 756, 995, 1263, 1688, 2488 |
| Hpy99I | CGWCG | 1 cut(s) | 11 |
| HpyCH4III | ACNGT | 7 cut(s) | 1671, 1692, 1774, 1940, 2073, 2111, 2492 |
| HpyCH4IV | ACGT | 1 cut(s) | 1684 |
| HpyF3I | CTNAG | 9 cut(s) | 372, 537, 791, 1032, 1233, 1410, 1778, 2086, 2290 |
| HpySE526I | ACGT | 1 cut(s) | 1684 |
| Hsp92I | GRCGYC | 1 cut(s) | 2059 |
| HspAI | GCGC | 6 cut(s) | 308, 314, 1534, 1759, 2029, 2287 |
| Ksp22I | TGATCA | 2 cut(s) | 636, 1696 |
| KspI | CCGCGG | 1 cut(s) | 300 |
| Kzo9I | GATC | 9 cut(s) | 13, 40, 636, 1696, 1803, 1834, 2479, 2623, 2650 |
| LguI | GCTCTTC | 3 cut(s) | 32, 885, 2247 |
| LmnI | GCTCC | 5 cut(s) | 646, 784, 1237, 2095, 2440 |
| Lsp1109I | GCAGC | 8 cut(s) | 1270, 1543, 1560, 1878, 1902, 2030, 2279, 2404 |
| LweI | GCATC | 7 cut(s) | 536, 1219, 1732, 1893, 2189, 2226, 2553 |
| MaeI | CTAG | 5 cut(s) | 926, 1047, 1166, 1179, 1224 |
| MaeII | ACGT | 1 cut(s) | 1684 |
| MaeIII | GTNAC | 6 cut(s) | 281, 1156, 1393, 1426, 2111, 2344 |
| MalI | GATC | 9 cut(s) | 15, 42, 638, 1698, 1805, 1836, 2481, 2625, 2652 |
| MbiI | CCGCTC | 1 cut(s) | 1219 |
| MboI | GATC | 9 cut(s) | 13, 40, 636, 1696, 1803, 1834, 2479, 2623, 2650 |
| MflI | RGATCY | 2 cut(s) | 13, 1803 |
| MhlI | GDGCHC | 7 cut(s) | 880, 1133, 1566, 1829, 1990, 2323, 2364 |
| MlyI | GAGTC | 4 cut(s) | 89, 320, 452, 2436 |
| MmeI | TCCRAC | 3 cut(s) | 139, 264, 2418 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1736 |
| MseI | TTAA | 9 cut(s) | 225, 387, 836, 917, 1121, 1242, 1362, 1506, 2385 |
| MspA1I | CMGCKG | 4 cut(s) | 299, 472, 2270, 2417 |
| MspCI | CTTAAG | 1 cut(s) | 2384 |
| MspI | CCGG | 2 cut(s) | 782, 1008 |
| MspR9I | CCNGG | 3 cut(s) | 1009, 1185, 2457 |
| Mva1269I | GAATGC | 3 cut(s) | 592, 1378, 2311 |
| MvaI | CCWGG | 2 cut(s) | 1185, 2457 |
| MvnI | CGCG | 5 cut(s) | 216, 299, 308, 367, 1015 |
| NciI | CCSGG | 1 cut(s) | 1009 |
| NcoI | CCATGG | 1 cut(s) | 2444 |
| NdeII | GATC | 9 cut(s) | 13, 40, 636, 1696, 1803, 1834, 2479, 2623, 2650 |
| NlaIV | GGNNCC | 5 cut(s) | 181, 621, 786, 2442, 2453 |
| NmeAIII | GCCGAG | 2 cut(s) | 114, 218 |
| NmuCI | GTSAC | 4 cut(s) | 281, 1393, 2111, 2344 |
| NotI | GCGGCCGC | 1 cut(s) | 303 |
| NruI | TCGCGA | 1 cut(s) | 1015 |
| NsbI | TGCGCA | 1 cut(s) | 1760 |
| NspI | RCATGY | 2 cut(s) | 133, 925 |
| NspV | TTCGAA | 2 cut(s) | 1856, 2230 |
| PaeI | GCATGC | 1 cut(s) | 925 |
| PciSI | GCTCTTC | 3 cut(s) | 32, 885, 2247 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 2488 |
| PctI | GAATGC | 3 cut(s) | 592, 1378, 2311 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1736 |
| PfeI | GAWTC | 4 cut(s) | 236, 391, 458, 482 |
| Pfl23II | CGTACG | 1 cut(s) | 231 |
| PleI | GAGTC | 4 cut(s) | 89, 320, 451, 2435 |
| PpsI | GAGTC | 4 cut(s) | 89, 320, 451, 2435 |
| PshBI | ATTAAT | 1 cut(s) | 1121 |
| Psp6I | CCWGG | 2 cut(s) | 1183, 2455 |
| PspGI | CCWGG | 2 cut(s) | 1183, 2455 |
| PspLI | CGTACG | 1 cut(s) | 231 |
| PspN4I | GGNNCC | 5 cut(s) | 181, 621, 786, 2442, 2453 |
| PspPI | GGNCC | 2 cut(s) | 34, 53 |
| PstI | CTGCAG | 1 cut(s) | 1578 |
| PsuI | RGATCY | 2 cut(s) | 13, 1803 |
| PvuII | CAGCTG | 3 cut(s) | 472, 2270, 2417 |
| RruI | TCGCGA | 1 cut(s) | 1015 |
| RsaI | GTAC | 3 cut(s) | 233, 1776, 1810 |
| RsaNI | GTAC | 3 cut(s) | 232, 1775, 1809 |
| SacII | CCGCGG | 1 cut(s) | 300 |
| SapI | GCTCTTC | 3 cut(s) | 32, 885, 2247 |
| SaqAI | TTAA | 9 cut(s) | 225, 387, 836, 917, 1121, 1242, 1362, 1506, 2385 |
| Sau3AI | GATC | 9 cut(s) | 13, 40, 636, 1696, 1803, 1834, 2479, 2623, 2650 |
| Sau96I | GGNCC | 2 cut(s) | 34, 53 |
| SchI | GAGTC | 4 cut(s) | 89, 320, 452, 2436 |
| ScrFI | CCNGG | 3 cut(s) | 1009, 1185, 2457 |
| SduI | GDGCHC | 7 cut(s) | 880, 1133, 1566, 1829, 1990, 2323, 2364 |
| SfaNI | GCATC | 7 cut(s) | 536, 1219, 1732, 1893, 2189, 2226, 2553 |
| SfcI | CTRYAG | 2 cut(s) | 1574, 1647 |
| Sfr303I | CCGCGG | 1 cut(s) | 300 |
| SfuI | TTCGAA | 2 cut(s) | 1856, 2230 |
| SgrBI | CCGCGG | 1 cut(s) | 300 |
| SmlI | CTYRAG | 3 cut(s) | 2094, 2322, 2384 |
| SmoI | CTYRAG | 3 cut(s) | 2094, 2322, 2384 |
| SphI | GCATGC | 1 cut(s) | 925 |
| SspMI | CTAG | 5 cut(s) | 926, 1047, 1166, 1179, 1224 |
| StyD4I | CCNGG | 3 cut(s) | 1007, 1183, 2455 |
| StyI | CCWWGG | 2 cut(s) | 2444, 2619 |
| TaaI | ACNGT | 7 cut(s) | 1671, 1692, 1774, 1940, 2073, 2111, 2492 |
| TaiI | ACGT | 1 cut(s) | 1687 |
| TaqI | TCGA | 8 cut(s) | 39, 329, 909, 1740, 1856, 2230, 2536, 2547 |
| TatI | WGTACW | 2 cut(s) | 1774, 1808 |
| TauI | GCSGC | 3 cut(s) | 302, 305, 308 |
| TfiI | GAWTC | 4 cut(s) | 236, 391, 458, 482 |
| Tru1I | TTAA | 9 cut(s) | 225, 387, 836, 917, 1121, 1242, 1362, 1506, 2385 |
| Tru9I | TTAA | 9 cut(s) | 225, 387, 836, 917, 1121, 1242, 1362, 1506, 2385 |
| TscAI | CASTG | 7 cut(s) | 50, 193, 519, 775, 910, 2116, 2265 |
| TseFI | GTSAC | 4 cut(s) | 281, 1393, 2111, 2344 |
| TseI | GCWGC | 8 cut(s) | 1283, 1531, 1573, 1891, 1915, 2043, 2267, 2417 |
| Tsp45I | GTSAC | 4 cut(s) | 281, 1393, 2111, 2344 |
| TspDTI | ATGAA | 3 cut(s) | 19, 1073, 2318 |
| TspGWI | ACGGA | 1 cut(s) | 219 |
| TspRI | CASTG | 7 cut(s) | 50, 193, 519, 775, 910, 2116, 2265 |
| Vha464I | CTTAAG | 1 cut(s) | 2384 |
| VspI | ATTAAT | 1 cut(s) | 1121 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 792 |
| XapI | RAATTY | 4 cut(s) | 162, 331, 697, 2585 |
| XceI | RCATGY | 2 cut(s) | 133, 925 |
| XmiI | GTMKAC | 1 cut(s) | 994 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1736 |
| XspI | CTAG | 5 cut(s) | 926, 1047, 1166, 1179, 1224 |