Rw7G029390

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0017178
Physical Location & Seq
Reverse (-)
40716468 .. 40721659
5192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G029390.1

Sequence Viewer

Length: 2625 bp
ATGGACGATCAAGACCCAGTAAGCCTCTTCTTGAGCCTCGATCACTGGCAAGGCCCCCCTGCCGATTCTGACAACGACTCGGACCCTCCTCTCCCTACTCCCTCCGACACCTACATGCTCGGCTTCGTCATCGCCAACATAGTCGGAATCCAGTACTACTCCGGCACCATCACCGGCCGAGAAATGGTCGGCCTCGTCCGCGAACCCCTCAACCCCTACGATTCCAACGCCATCAGAGTCCTCAACACCCGGACTATCCAAGTCGGCCACATCGAACGCGCCGTCGCCGCCGCCCTCGCCCCCTTGATCGACGCCGACTTGATCACCGTCGAGGGCATCGTCCCCAACACGCGCGCCAAGGCCAACAGGTTTAAGATTCCTTGCCAGGTTCACATCTTTGCCAGAATCGACGACTTCCCCTCCGTCATATCCGCCATTCACGGCGCTGGCCTGCTGCTGATTTCGGACAACGACGCGGCGTTTCCATCGGAGGCGATGGTGGTGAAGGAGAAGAAGGCTGAGAGGGGGTACAAGACTGTGGATGAGATTTTCAAGCTGGTGGATGACAATGCCAGCCAAAACGGTGCGTTGGAGCCAATGGAGCCACCCAAGGAAGTGATCAAATCGGAGCTTTTTCGACACCAGAAGGAAGGGCTGGGGTGGTTGGTTGGCAGAGAGAATTCTGTTGATTTGCCTCCGTTTTGGGAAGAGAAGAGTGATGGGTCTTTTGTCAATGTGTTGACAAATTACCATACAAAAAACCGACCGGAGCCTCTAAGAGGTGGCATCTTTGCAGATGATATGGGTTTGGGTAAGACTCTGACTTTGCTTTCCTTGATTGCTTTTGATAGATATGGTAGTGGCAACTGTGCTAGTGTAGATGTAAGCATACCAGATGATAATGAAATGGGTGAGGATGAGGATGAGGGGTTGTTTGTTTCCGGTAGTAAGAAGGGTAAGAGGAATAAAACAAGTAAAAAGGGAGCTGCACCAAGGAAAAGACGAAAAACTGAGGATAGCAATGTGAGTGTAAATGATAATTCTACTGCTGGTTTCAGTAGCAAGTCCACGATAATTGTGTGCCCTCCTTCTGTATTTTCAACATGGGTAACACAGCTAGGAGAACACACTAGGCCAGGCAGATTGAAGGTGTATATGTATTATGGGGACCGGACTCGAAATGCTGAGGAGCTTAAGAAGTACGATATAGTGTTAACTACTTACAGTATTCTTGCTACTGAAAATTCTTGGCCAAGCTCTCCTGTTAAAGAGATTGAGTGGTGGCGGGTCATTTTGGATGAGGCGCATACGATTAAGAATGTGAATGCTCAACAAAGTCAAGCTGTCACTAACTTGAAGGCTAAGCGAAGGTGGGCTGTTACTGGAACACCAATCCAGAATGGTTCATTTGATTTGTTTTCTTTGATGGCATTCTTGAGATTTGAGCCTTTCTCAATTAAGAGCTACTGGCAAAGCTTGGTGCAGCGCCCGCTTGCTCAAGGTAACAAGATGGGGCTTTCACGCCTGCAGGTTTTGATGGCAACCATTTCTTTGCGGAGAACAAAAGACAAAGGACTGATTGGATTGCCACCTAAAACTATAGAGACTTGCTACGTGGAATTATCTGCTGAAGAACGTGAACTGTATGATGGGATGGAGGGAGAAGCGAAGAGTGTATTGCGGAATTACATAGCTGCTGGTAGTATGATGCGGAATTATTCCACTGTACTTAGCATAATCTTACGACTGCGGCAAATCTGTACTGATTCGGCGTTATGCCCTTCTGATCTCAAGTCACTTCTTCCTTCCAACGATATTGAAGATGTCTCAAAGAACCCAGAGCTACTGAAAAAGATGGTTGAGGTGCTGCAAGATGGTGAAGATTTTGATTGTCCAATTTGCATTTCTCCACCAACCGATGTTGTTATTACTTGTTGTGCACACATCTTTTGCCAAGCTTGTATTCTGAAAACCCTTCAGCGCACAAAACCCTGCTGTCCTTTGTGTCGCCGTCCTCTATCACAGTCTGATCTGTTCTCAGCCCCTCAGACATCTTCTGATGATGACAACACAATATCCTCAAAAACAACCATGTCTTCAAAAGTTTCCACTCTCGTAAAACTTCTTGTTGAATCAAGGAATCAAAACCCACTGACCAAATCAGTAGTGTTTTCACAATTTCGAAAGATGTTGCTACATCTTGAAGATGTACTGAAAACAGCTGGTTTCAAGGTTTTGCGTTTAGATGGGTCTATGACCGCAAATAAAAGAGCTCAAGTAATCAAAGAGTTTGGGGTTGTAGGAGATGATACGCCCACAGTTTTGCTTGCAAGTCTGAAGGCTTCAGGAACAGGGATAAATCTTACCACTGCTAGTAAAGTCTATTTGTTGGAGCCATGGTGGAACCCAGCAGTTGAGGAACAAGCAATGGATCGCGTTCACCGGATTGGGCAGAAGGAGGATGTAAAGATTGTCAGATTGATTGCTCGAAACAGCATTGAAGAAAGGATATTAGAGTTACAGGAGAAAAAGAAGAAACTTGCAAAGGAAGCTTTCGGAAAGAGAGGTGCAAAAGATCGCAGAGATGTGGGTGCCGATGATCTTATTAGCCTCATGTCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

874

Amino Acids

97.09

Weight (kDa)

6.86

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIRAN PF08797 41 - 131 1.7e-21 HIRAN domain
SNF2-rel_dom PF00176 214 - 590 2.9e-68 SNF2-related domain
zf-C3HC4_3 PF13920 629 - 675 9.4e-06 Zinc finger, C3HC4 type (RING finger)
Helicase_C PF00271 701 - 817 2.4e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05130
fragaria_vesca FvH4_5g29290
malus_domestica MD15G1139300.v1.1
prunus_persica Prupe.7G028900_v2.0.a1
pyrus_communis pycom520g00520
rosa_chinensis RchiOBHm_Chr7g0222151
rosa_laevigata RLG00000002088
rosa_multiflora Rmu_sc0009183.1_g000008
rosa_roxburghii Rroxscaffold_3G00237370
rosa_rugosa Rorug07G0205700
rosa_samantha Rh7BG336900 Rh7DG345000
rosa_wichuraiana Rw7G029390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1519
AccB1I GGYRCC 2 cut(s) 164, 2591
AccII CGCG 6 cut(s) 201, 279, 352, 354, 476, 2436
AclWI GGATC 1 cut(s) 2439
AcoI YGGCCR 3 cut(s) 175, 265, 1250
AcsI RAATTY 2 cut(s) 679, 1243
AcuI CTGAAG 4 cut(s) 1650, 1961, 2328, 2357
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 6 cut(s) 155, 530, 1202, 1728, 1762, 2211
AfiI CCNNNNNNNGG 2 cut(s) 184, 779
AflII CTTAAG 1 cut(s) 1193
AjnI CCWGG 2 cut(s) 384, 1135
AjuI GAANNNNNNNTTGG 4 cut(s) 1888, 1920, 1947, 1979
Alw21I GWGCWC 2 cut(s) 1942, 2275
Alw26I GTCTC 2 cut(s) 1598, 1831
Alw44I GTGCAC 1 cut(s) 1938
AlwI GGATC 1 cut(s) 2439
AoxI GGCC 8 cut(s) 52, 175, 190, 265, 360, 448, 1133, 1250
ApaLI GTGCAC 1 cut(s) 1938
ApeKI GCWGC 5 cut(s) 454, 986, 1483, 1694, 1867
ApoI RAATTY 2 cut(s) 679, 1243
ArsI GACNNNNNNTTYG 4 cut(s) 267, 299, 808, 840
AspLEI GCGC 7 cut(s) 281, 354, 356, 446, 1306, 1488, 1983
AspS9I GGNCC 3 cut(s) 53, 82, 1168
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 6 cut(s) 163, 316, 514, 923, 1889, 2432
AsuII TTCGAA 1 cut(s) 2182
AvaII GGWCC 2 cut(s) 82, 1168
BaeGI GKGCMC 2 cut(s) 1085, 1942
BalI TGGCCA 1 cut(s) 1252
BanI GGYRCC 2 cut(s) 164, 2591
BanII GRGCYC 1 cut(s) 2275
BbsI GAAGAC 1 cut(s) 2088
Bbv12I GWGCWC 2 cut(s) 1942, 2275
BbvCI CCTCAGC 1 cut(s) 1185
BbvI GCAGC 5 cut(s) 441, 973, 1495, 1681, 1854
BceAI ACGGC 3 cut(s) 266, 457, 1995
BciT130I CCWGG 2 cut(s) 386, 1137
BclI TGATCA 2 cut(s) 321, 618
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 1598, 1831
BfaI CTAG 4 cut(s) 873, 1118, 1131, 2373
BfmI CTRYAG 2 cut(s) 1526, 1599
BfoI RGCGCY 2 cut(s) 447, 1489
BfrI CTTAAG 1 cut(s) 1193
BfuAI ACCTGC 1 cut(s) 1519
BisI GCNGC 9 cut(s) 288, 291, 455, 477, 987, 1484, 1695, 1751, 1868
BlpI GCTNAGC 1 cut(s) 1362
BlsI GCNGC 9 cut(s) 289, 292, 456, 478, 988, 1485, 1696, 1752, 1869
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 3 cut(s) 250, 386, 1137
Bme18I GGWCC 2 cut(s) 82, 1168
BmgT120I GGNCC 3 cut(s) 53, 82, 1168
BmrFI CCNGG 3 cut(s) 250, 386, 1137
BmrI ACTGGG 1 cut(s) 11
BmsI GCATC 3 cut(s) 345, 795, 1698
BmuI ACTGGG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 2088
BplI GAGNNNNNCTC 2 cut(s) 1436, 1468
Bpu10I CCTNAGC 1 cut(s) 1185
Bpu1102I GCTNAGC 1 cut(s) 1362
Bpu14I TTCGAA 1 cut(s) 2182
BpuEI CTTGAG 5 cut(s) 52, 1456, 1482, 1775, 2259
BpuMI CCSGG 1 cut(s) 250
BsaAI YACGTR 1 cut(s) 1615
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 4 cut(s) 357, 609, 992, 2396
BsaWI WCCGGW 4 cut(s) 766, 941, 1170, 2442
BsaXI ACNNNNNCTCC 4 cut(s) 404, 434, 2384, 2414
Bsc4I CCNNNNNNNGG 2 cut(s) 184, 779
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 5 cut(s) 17, 50, 151, 1387, 1472
Bse3DI GCAATG 2 cut(s) 1027, 2433
BseBI CCWGG 2 cut(s) 386, 1137
BseDI CCNNGG 4 cut(s) 357, 609, 992, 2396
BseGI GGATG 7 cut(s) 547, 568, 922, 928, 1303, 1659, 2467
BseLI CCNNNNNNNGG 2 cut(s) 184, 779
BseMI GCAATG 2 cut(s) 1027, 2433
BseMII CTCAG 5 cut(s) 510, 1002, 1176, 2052, 2060
BseNI ACTGG 5 cut(s) 17, 50, 151, 1387, 1472
BsePI GCGCGC 1 cut(s) 352
BseRI GAGGAG 2 cut(s) 78, 1202
BseSI GKGCMC 2 cut(s) 1085, 1942
BseX3I CGGCCG 1 cut(s) 175
BseXI GCAGC 5 cut(s) 441, 973, 1495, 1681, 1854
BseYI CCCAGC 2 cut(s) 655, 2407
BsgI GTGCAG 2 cut(s) 972, 1502
Bsh1236I CGCG 6 cut(s) 201, 279, 352, 354, 476, 2436
Bsh1285I CGRYCG 2 cut(s) 178, 767
BshFI GGCC 8 cut(s) 54, 177, 192, 267, 362, 450, 1135, 1252
BshNI GGYRCC 2 cut(s) 164, 2591
BsiEI CGRYCG 2 cut(s) 178, 767
BsiHKAI GWGCWC 2 cut(s) 1942, 2275
BsiSI CCGG 7 cut(s) 162, 174, 250, 767, 942, 1171, 2443
BslFI GGGAC 2 cut(s) 326, 1181
BslI CCNNNNNNNGG 2 cut(s) 184, 779
BsmAI GTCTC 2 cut(s) 1598, 1831
BsmFI GGGAC 2 cut(s) 326, 1181
BsmI GAATGC 2 cut(s) 1330, 1430
BsnI GGCC 8 cut(s) 54, 177, 192, 267, 362, 450, 1135, 1252
Bsp119I TTCGAA 1 cut(s) 2182
Bsp1286I GDGCHC 3 cut(s) 1085, 1942, 2275
Bsp1720I GCTNAGC 1 cut(s) 1362
Bsp19I CCATGG 1 cut(s) 2396
BspANI GGCC 8 cut(s) 54, 177, 192, 267, 362, 450, 1135, 1252
BspCNI CTCAG 5 cut(s) 511, 1003, 1177, 2051, 2059
BspFNI CGCG 6 cut(s) 201, 279, 352, 354, 476, 2436
BspMAI CTGCAG 1 cut(s) 1530
BspMI ACCTGC 1 cut(s) 1519
BspPI GGATC 1 cut(s) 2439
BspT104I TTCGAA 1 cut(s) 2182
BspT107I GGYRCC 2 cut(s) 164, 2591
BspTI CTTAAG 1 cut(s) 1193
BsrDI GCAATG 2 cut(s) 1027, 2433
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 5 cut(s) 17, 50, 151, 1387, 1472
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 4 cut(s) 357, 609, 992, 2396
BssHII GCGCGC 1 cut(s) 352
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 4 cut(s) 357, 609, 992, 2396
Bst2UI CCWGG 2 cut(s) 386, 1137
Bst4CI ACNGT 9 cut(s) 328, 538, 584, 869, 1226, 1644, 1726, 2025, 2320
Bst6I CTCTTC 4 cut(s) 32, 702, 707, 1664
BstACI GRCGYC 1 cut(s) 312
BstAFI CTTAAG 1 cut(s) 1193
BstBAI YACGTR 1 cut(s) 1615
BstBI TTCGAA 1 cut(s) 2182
BstC8I GCNNGC 8 cut(s) 354, 448, 452, 574, 1490, 1494, 1526, 2328
BstDEI CTNAG 8 cut(s) 519, 776, 1011, 1185, 1362, 1730, 2038, 2046
BstDSI CCRYGG 1 cut(s) 2396
BstENI CCTNNNNNAGG 1 cut(s) 777
BstF5I GGATG 7 cut(s) 547, 568, 922, 928, 1303, 1659, 2467
BstFNI CGCG 6 cut(s) 201, 279, 352, 354, 476, 2436
BstH2I RGCGCY 2 cut(s) 447, 1489
BstHHI GCGC 7 cut(s) 281, 354, 356, 446, 1306, 1488, 1983
BstMAI GTCTC 2 cut(s) 1598, 1831
BstMCI CGRYCG 2 cut(s) 178, 767
BstMWI GCNNNNNNNGC 6 cut(s) 198, 287, 296, 601, 1489, 2549
BstNI CCWGG 2 cut(s) 386, 1137
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 3 cut(s) 248, 384, 1135
BstSFI CTRYAG 2 cut(s) 1526, 1599
BstSLI GKGCMC 2 cut(s) 1085, 1942
BstUI CGCG 6 cut(s) 201, 279, 352, 354, 476, 2436
BstV1I GCAGC 5 cut(s) 441, 973, 1495, 1681, 1854
BstV2I GAAGAC 1 cut(s) 2088
BstZI CGGCCG 1 cut(s) 175
BsuRI GGCC 8 cut(s) 54, 177, 192, 267, 362, 450, 1135, 1252
BtgI CCRYGG 1 cut(s) 2396
BtgZI GCGATG 2 cut(s) 115, 509
BtsCI GGATG 7 cut(s) 547, 568, 922, 928, 1303, 1659, 2467
BtsI GCAGTG 1 cut(s) 2367
BtsIMutI CAGTG 4 cut(s) 43, 1722, 2150, 2367
BveI ACCTGC 1 cut(s) 1519
Cac8I GCNNGC 8 cut(s) 354, 448, 452, 574, 1490, 1494, 1526, 2328
CfoI GCGC 7 cut(s) 281, 354, 356, 446, 1306, 1488, 1983
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 3 cut(s) 53, 82, 1168
CseI GACGC 2 cut(s) 320, 482
Csp6I GTAC 6 cut(s) 154, 529, 1201, 1727, 1761, 2210
CspCI CAANNNNNGTGG 2 cut(s) 1057, 1092
CviAII CATG 5 cut(s) 115, 1104, 2092, 2397, 2614
CviQI GTAC 6 cut(s) 154, 529, 1201, 1727, 1761, 2210
DdeI CTNAG 8 cut(s) 519, 776, 1011, 1185, 1362, 1730, 2038, 2046
EaeI YGGCCR 3 cut(s) 175, 265, 1250
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 4 cut(s) 32, 702, 707, 1664
EarI CTCTTC 4 cut(s) 32, 702, 707, 1664
EciI GGCGGA 1 cut(s) 421
Ecl136II GAGCTC 1 cut(s) 2273
EclXI CGGCCG 1 cut(s) 175
Eco130I CCWWGG 4 cut(s) 357, 609, 992, 2396
Eco24I GRGCYC 1 cut(s) 2275
Eco47I GGWCC 2 cut(s) 82, 1168
Eco52I CGGCCG 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 2273
Eco57I CTGAAG 4 cut(s) 1650, 1961, 2328, 2357
EcoICRI GAGCTC 1 cut(s) 2273
EcoNI CCTNNNNNAGG 1 cut(s) 777
EcoO109I RGGNCCY 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 679
EcoRII CCWGG 2 cut(s) 384, 1135
EcoT14I CCWWGG 4 cut(s) 357, 609, 992, 2396
EcoT38I GRGCYC 1 cut(s) 2275
ErhI CCWWGG 4 cut(s) 357, 609, 992, 2396
FaeI CATG 5 cut(s) 118, 1107, 2095, 2400, 2617
FaqI GGGAC 2 cut(s) 326, 1181
FatI CATG 5 cut(s) 114, 1103, 2091, 2396, 2613
FauI CCCGC 2 cut(s) 1278, 1497
FbaI TGATCA 2 cut(s) 321, 618
Fnu4HI GCNGC 9 cut(s) 288, 291, 455, 477, 987, 1484, 1695, 1751, 1868
FokI GGATG 7 cut(s) 554, 575, 929, 935, 1310, 1666, 2474
FriOI GRGCYC 1 cut(s) 2275
Fsp4HI GCNGC 9 cut(s) 288, 291, 455, 477, 987, 1484, 1695, 1751, 1868
FspBI CTAG 4 cut(s) 873, 1118, 1131, 2373
GlaI GCGC 7 cut(s) 280, 353, 355, 445, 1305, 1487, 1982
GluI GCNGC 9 cut(s) 288, 291, 455, 477, 987, 1484, 1695, 1751, 1868
GsaI CCCAGC 2 cut(s) 659, 2411
HaeII RGCGCY 2 cut(s) 447, 1489
HaeIII GGCC 8 cut(s) 54, 177, 192, 267, 362, 450, 1135, 1252
HapII CCGG 7 cut(s) 162, 174, 250, 767, 942, 1171, 2443
HgaI GACGC 2 cut(s) 320, 482
HhaI GCGC 7 cut(s) 281, 354, 356, 446, 1306, 1488, 1983
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 5 cut(s) 118, 1107, 2095, 2400, 2617
Hin6I GCGC 7 cut(s) 279, 352, 354, 444, 1304, 1486, 1981
HinP1I GCGC 7 cut(s) 279, 352, 354, 444, 1304, 1486, 1981
HincII GTYRAC 2 cut(s) 741, 1215
HindII GTYRAC 2 cut(s) 741, 1215
HindIII AAGCTT 3 cut(s) 1474, 1956, 2550
HpaI GTTAAC 1 cut(s) 1215
HpaII CCGG 7 cut(s) 162, 174, 250, 767, 942, 1171, 2443
HphI GGTGA 6 cut(s) 163, 316, 514, 923, 1889, 2432
Hpy166II GTNNAC 7 cut(s) 391, 741, 1068, 1215, 1640, 1940, 2440
Hpy188III TCNNGA 6 cut(s) 11, 31, 1396, 1435, 2201, 2346
Hpy8I GTNNAC 7 cut(s) 391, 741, 1068, 1215, 1640, 1940, 2440
Hpy99I CGWCG 5 cut(s) 287, 314, 332, 413, 476
HpyCH4III ACNGT 9 cut(s) 328, 538, 584, 869, 1226, 1644, 1726, 2025, 2320
HpyCH4IV ACGT 2 cut(s) 1614, 1636
HpyF10VI GCNNNNNNNGC 6 cut(s) 198, 287, 296, 601, 1489, 2549
HpyF3I CTNAG 8 cut(s) 519, 776, 1011, 1185, 1362, 1730, 2038, 2046
HpySE526I ACGT 2 cut(s) 1614, 1636
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 5 cut(s) 118, 1107, 2095, 2400, 2617
HspAI GCGC 7 cut(s) 279, 352, 354, 444, 1304, 1486, 1981
Ksp22I TGATCA 2 cut(s) 321, 618
KspAI GTTAAC 1 cut(s) 1215
LmnI GCTCC 7 cut(s) 592, 601, 628, 769, 983, 1189, 2392
Lsp1109I GCAGC 5 cut(s) 441, 973, 1495, 1681, 1854
LweI GCATC 3 cut(s) 345, 795, 1698
MaeI CTAG 4 cut(s) 873, 1118, 1131, 2373
MaeII ACGT 2 cut(s) 1614, 1636
MaeIII GTNAC 6 cut(s) 1108, 1345, 1378, 1502, 1794, 2517
MhlI GDGCHC 3 cut(s) 1085, 1942, 2275
MlsI TGGCCA 1 cut(s) 1252
MluNI TGGCCA 1 cut(s) 1252
MlyI GAGTC 4 cut(s) 71, 246, 811, 1168
MmeI TCCRAC 6 cut(s) 124, 129, 249, 570, 1833, 2370
Mox20I TGGCCA 1 cut(s) 1252
MscI TGGCCA 1 cut(s) 1252
MseI TTAA 6 cut(s) 372, 1194, 1214, 1266, 1314, 1458
MslI CAYNNNNRTG 1 cut(s) 113
Msp20I TGGCCA 1 cut(s) 1252
MspA1I CMGCKG 1 cut(s) 2222
MspCI CTTAAG 1 cut(s) 1193
MspI CCGG 7 cut(s) 162, 174, 250, 767, 942, 1171, 2443
MspR9I CCNGG 3 cut(s) 250, 386, 1137
Mva1269I GAATGC 2 cut(s) 1330, 1430
MvaI CCWGG 2 cut(s) 386, 1137
MvnI CGCG 6 cut(s) 201, 279, 352, 354, 476, 2436
MwoI GCNNNNNNNGC 6 cut(s) 198, 287, 296, 601, 1489, 2549
NciI CCSGG 1 cut(s) 250
NcoI CCATGG 1 cut(s) 2396
NlaIII CATG 5 cut(s) 118, 1107, 2095, 2400, 2617
NmeAIII GCCGAG 2 cut(s) 99, 203
NmuCI GTSAC 2 cut(s) 1345, 1794
NspI RCATGY 1 cut(s) 118
NspV TTCGAA 1 cut(s) 2182
PauI GCGCGC 1 cut(s) 352
PcsI WCGNNNNNNNCGW 3 cut(s) 270, 279, 336
PctI GAATGC 2 cut(s) 1330, 1430
PfeI GAWTC 8 cut(s) 65, 147, 221, 376, 405, 1766, 2132, 2140
PkrI GCNGC 9 cut(s) 289, 292, 456, 478, 988, 1485, 1696, 1752, 1869
PleI GAGTC 4 cut(s) 71, 245, 811, 1168
PpsI GAGTC 4 cut(s) 71, 245, 811, 1168
Ppu21I YACGTR 1 cut(s) 1615
Psp124BI GAGCTC 1 cut(s) 2275
Psp6I CCWGG 2 cut(s) 384, 1135
PspFI CCCAGC 2 cut(s) 655, 2407
PspGI CCWGG 2 cut(s) 384, 1135
PspPI GGNCC 3 cut(s) 53, 82, 1168
PstI CTGCAG 1 cut(s) 1530
PteI GCGCGC 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 2222
RsaI GTAC 6 cut(s) 155, 530, 1202, 1728, 1762, 2211
RsaNI GTAC 6 cut(s) 154, 529, 1201, 1727, 1761, 2210
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 2275
SaqAI TTAA 6 cut(s) 372, 1194, 1214, 1266, 1314, 1458
SatI GCNGC 9 cut(s) 288, 291, 455, 477, 987, 1484, 1695, 1751, 1868
Sau96I GGNCC 3 cut(s) 53, 82, 1168
SbfI CCTGCAGG 1 cut(s) 1530
ScaI AGTACT 1 cut(s) 155
SchI GAGTC 4 cut(s) 71, 246, 811, 1168
ScrFI CCNGG 3 cut(s) 250, 386, 1137
SdaI CCTGCAGG 1 cut(s) 1530
SduI GDGCHC 3 cut(s) 1085, 1942, 2275
SfaNI GCATC 3 cut(s) 345, 795, 1698
SfcI CTRYAG 2 cut(s) 1526, 1599
SfuI TTCGAA 1 cut(s) 2182
SinI GGWCC 2 cut(s) 82, 1168
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 6 cut(s) 31, 1193, 1435, 1497, 1790, 2274
SmoI CTYRAG 6 cut(s) 31, 1193, 1435, 1497, 1790, 2274
Sse8387I CCTGCAGG 1 cut(s) 1530
SspMI CTAG 4 cut(s) 873, 1118, 1131, 2373
SstI GAGCTC 1 cut(s) 2275
StyD4I CCNGG 3 cut(s) 248, 384, 1135
StyI CCWWGG 4 cut(s) 357, 609, 992, 2396
TaaI ACNGT 9 cut(s) 328, 538, 584, 869, 1226, 1644, 1726, 2025, 2320
TaiI ACGT 2 cut(s) 1617, 1639
TaqI TCGA 9 cut(s) 39, 273, 309, 330, 408, 637, 1177, 2182, 2488
TatI WGTACW 4 cut(s) 153, 1726, 1760, 2209
TauI GCSGC 4 cut(s) 290, 293, 479, 1753
TfiI GAWTC 8 cut(s) 65, 147, 221, 376, 405, 1766, 2132, 2140
Tru1I TTAA 6 cut(s) 372, 1194, 1214, 1266, 1314, 1458
Tru9I TTAA 6 cut(s) 372, 1194, 1214, 1266, 1314, 1458
TscAI CASTG 4 cut(s) 50, 1729, 2157, 2374
TseFI GTSAC 2 cut(s) 1345, 1794
TseI GCWGC 5 cut(s) 454, 986, 1483, 1694, 1867
Tsp45I GTSAC 2 cut(s) 1345, 1794
TspDTI ATGAA 2 cut(s) 918, 1395
TspGWI ACGGA 2 cut(s) 412, 687
TspRI CASTG 4 cut(s) 50, 1729, 2157, 2374
Vha464I CTTAAG 1 cut(s) 1193
VneI GTGCAC 1 cut(s) 1938
VpaK11BI GGWCC 2 cut(s) 82, 1168
XagI CCTNNNNNAGG 1 cut(s) 777
XapI RAATTY 2 cut(s) 679, 1243
XceI RCATGY 1 cut(s) 118
XspI CTAG 4 cut(s) 873, 1118, 1131, 2373
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.