Rh7BG336900

SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0017178
Physical Location & Seq
Reverse (-)
35117388 .. 35122569
5182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG336900.1

Sequence Viewer

Length: 2619 bp
ATGGACGATCAAGACCCAGTAAGCCTCTTCTTGAGCCTCGATCACTGGCAAGGCCCCCCTGCCGACCCTGACAACGACTCGGACCCTCCTCTCCCTACTCCCTCCGACACCTACATGCTCGGCTTCGTCATCGCCAACATAGTCGGAATCCAGTACTACTCCGGCACCATCACCGGCCGAGAAATGGTCGGCCTCGTCCGCGAACCCCTCAACCCCTACGATTCCAACGCCATCAGAGTCCTCAACACCCGGACTATCCAAGTCGGCCACATCGAACGCGCCGTTGCCGCCGCCCTCGCCCCGTTGATTGACGCCGACTTGATCGCCGTCGAAGGAATCGTCCCCAACACGCGCGCCAAGGGCAATAGGTTTAAGATTCCTTGCCAGGTTCACATCTTTGCCAGAATCGACGACTTCCCCTCCGTCATATCTGCCATACACGGCGCTGGCCTGCAGTTGATTTCGGACAACGACGCGGTGTTTTCATCGGAGGCGATGGTGGTGAAGGAGAAGAAGGCTGAGAGGGGGTACAAGACTGTGGATGAGATTTTCAAGCTGGTGGATGACAATGCCAGCCAAAACGGTGCGTTGGAGCCGATGGAGCCGCCCAAGGAAGTGATCAAATCGGAGCTTTTTCGGCACCAGAAGGAAGGGCTGGGGTGGTTGGTTGGCAGAGAGAATTCTGTTGATTTGCCTCCGTTTTGGGAAGAGAAGAGTGATGGGTCTTTTGTCAATGTGTTGACAAATTACCATACACAGAACCGACCGGAGCCTCTAAGAGGTGGCATCTTTGCAGATGATATGGGTTTGGGTAAGACTCTGACTTTGCTTTCCTTGATTGCTTTTGATAGATATGGTAGTGGCAACTGTGCTAGTGTAGATGTAAGCATACCAAATGATAATGAAATGGGTGAGGATGAGGGGTTTCCTGTTTCCGGTAGTAAGAAGGGTAAGAGGAATAAAACAAGTAAAAAGGGAGCTGCGCCAAGGAAAAGACGTAAAACTGAGGATAGCAATGTGAGTGTAAATGATAAGTCTACTGCTGGTTTCAGTAGCAAGTCCACGATAATTGTGTGCCCTCCTTCTGTATTTTCGACATGGGTAACACAGCTAGGAGAACACACTAGGCCAGGCAGATTGAAGGTGTATATGTATTATGGGGATCGGACTCGAAATGCTGAGGAGCTTAAGAAGTACGATATAGTGTTAACTACTTACAGTATTCTTGCTACTGAACATTCTTGGCCAAGCTCTCCTGTTAAAGAGATTGAGTGGTGGCGGGTCATTTTGGATGAGGCGCATACGATTAAGAATGTGAATGCTCAACAAAGTCAAGCTGTCACTAACTTGAAGGCTAAGCGAAGGTGGGCTGTTACTGGAACACCAATCCAGAATGGCTCATTTGATTTGTTTTCTTTGATGGCATTCTTGAGATTTGAGCCTTTCTCAATTAAGAGCTACTGGCAAAGCTTGGTGCAGCGCCCGCTTGCTCAAGGTAACAAGATGGGGCTTTCACGCCTGCAGGTTTTGATGGCAACCATTTCTTTGCGGAGAACAAAAGACAAAGGACTGATTGGATTGCCACCTAAAACTATAGAGACTTGCTACGTGGAATTATCTGCTGAAGAACGTGAACTGTATGATGGGATGGAGGGAGAAGCGAAGAGTGTATTGCGGAATTACATAGCTGCTGGTAGTATGATGCGGAATTATTCCACTGTACTTAGTATAATCTTACGACTGCGGCAAATCTGTACTGATTCGGCATTATGCCCTTCTGATCTCAAGTCACTTCTTCCTTCCAACGATATTGAAGATGTCTCAAAGAACTCAGAGCTACTGAAAAAGATGGTTGAGGTGCTGCAAGATGGTGAAGATTTTGATTGTCCAATTTGCATTTCTCCACCAACCGATGTTGTTATTACTTGTTGTGCACACATCTTTTGCCAAGCTTGTATTCTGAAAACCCTTCAGCGCACAAAACCCTGCTGTCCTTTGTGTCGCCGTCCTCTATCACAATCTGATCTGTTCTCAGCCCCTCAAACATCTTCTGATGATGACAACACAATATCCTCAAAAACAACCATGTCTTCAAAAGTTTCTACTCTCGTAAAACTTCTTGTTGAATCAAGGAATCAAAACCCACTGACCAAATCAGTAGTGTTTTCACAATTTCGAAAGATGTTGCTACATCTTGAAGAGGTACTGAAAACAGCTGGTTTCAAGGTTTTGCGTTTAGATGGGTCTATGACCGCAAATAAAAGAGCTCAAGTAATCAAAGAGTTTGGGGTTGTAGGAGATGATGTGCCCACAGTTTTACTTGCAAGTCTGAAGGCTTCAGGAACAGGGATAAATCTTACCGCTGCTAGTAAAGTCTATTTGTTGGAGCCATGGTGGAACCCAGCAGTTGAGGAACAAGCAATGGATCGCGTTCACCGGATTGGGCAGAAGGAGGATGTAAAGATTGTCAGATTGATTGCTCGAAACAGCATTGAAGAGAGGATATTAGAGTTACAGGAGAAAAAGAAGAAACTTGCGAAGGAAGCTTTCGGAAAGAGAGGTGCAAAAGATCGCAGAGATGTGGGTGCCGATGATCTTATTAGCCTCATGTCCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HIRAN Helicase_C SNF2_N zf-C3HC4 zf-C3HC4_3

Protein Analysis

872

Amino Acids

96.83

Weight (kDa)

7.79

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HIRAN PF08797 41 - 132 5.2e-21 HIRAN domain
SNF2-rel_dom PF00176 214 - 588 2.7e-68 SNF2-related domain
zf-C3HC4_3 PF13920 627 - 673 9.4e-06 Zinc finger, C3HC4 type (RING finger)
Helicase_C PF00271 699 - 815 2.9e-19 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05130
fragaria_vesca FvH4_5g29290
malus_domestica MD15G1139300.v1.1
prunus_persica Prupe.7G028900_v2.0.a1
pyrus_communis pycom520g00520
rosa_chinensis RchiOBHm_Chr7g0222151
rosa_laevigata RLG00000002088
rosa_multiflora Rmu_sc0009183.1_g000008
rosa_roxburghii Rroxscaffold_3G00237370
rosa_rugosa Rorug07G0205700
rosa_samantha Rh7BG336900 Rh7DG345000
rosa_wichuraiana Rw7G029390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1513
AccB1I GGYRCC 3 cut(s) 164, 639, 2585
AccI GTMKAC 1 cut(s) 1037
AccII CGCG 6 cut(s) 201, 279, 352, 354, 476, 2430
AclWI GGATC 2 cut(s) 1170, 2433
AcoI YGGCCR 3 cut(s) 175, 265, 1244
AcsI RAATTY 1 cut(s) 679
AcuI CTGAAG 4 cut(s) 1644, 1955, 2322, 2351
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 6 cut(s) 155, 530, 1196, 1722, 1756, 2205
AfiI CCNNNNNNNGG 3 cut(s) 184, 779, 935
AflII CTTAAG 1 cut(s) 1187
AgsI TTSAA 9 cut(s) 553, 1141, 1351, 1814, 2094, 2126, 2198, 2224, 2495
AjnI CCWGG 2 cut(s) 384, 1129
AjuI GAANNNNNNNTTGG 4 cut(s) 1882, 1914, 1941, 1973
Alw21I GWGCWC 2 cut(s) 1936, 2269
Alw26I GTCTC 2 cut(s) 1592, 1825
Alw44I GTGCAC 1 cut(s) 1932
AlwI GGATC 2 cut(s) 1170, 2433
AoxI GGCC 7 cut(s) 52, 175, 190, 265, 448, 1127, 1244
ApaLI GTGCAC 1 cut(s) 1932
ApeKI GCWGC 5 cut(s) 980, 1477, 1688, 1861, 2363
ApoI RAATTY 1 cut(s) 679
ArsI GACNNNNNNTTYG 4 cut(s) 324, 356, 808, 840
AspLEI GCGC 8 cut(s) 281, 354, 356, 446, 985, 1300, 1482, 1977
AspS9I GGNCC 2 cut(s) 53, 82
AsuC2I CCSGG 1 cut(s) 250
AsuHPI GGTGA 5 cut(s) 163, 514, 923, 1883, 2426
AsuII TTCGAA 1 cut(s) 2176
AvaII GGWCC 1 cut(s) 82
BaeGI GKGCMC 3 cut(s) 1079, 1936, 2310
BalI TGGCCA 1 cut(s) 1246
BanI GGYRCC 3 cut(s) 164, 639, 2585
BanII GRGCYC 1 cut(s) 2269
BbsI GAAGAC 1 cut(s) 2082
Bbv12I GWGCWC 2 cut(s) 1936, 2269
BbvCI CCTCAGC 1 cut(s) 1179
BbvI GCAGC 5 cut(s) 967, 1489, 1675, 1848, 2350
BceAI ACGGC 4 cut(s) 266, 311, 457, 1989
BciT130I CCWGG 2 cut(s) 386, 1131
BclI TGATCA 1 cut(s) 618
BcnI CCSGG 1 cut(s) 250
BcoDI GTCTC 2 cut(s) 1592, 1825
BfaI CTAG 4 cut(s) 873, 1112, 1125, 2367
BfmI CTRYAG 3 cut(s) 452, 1520, 1593
BfoI RGCGCY 2 cut(s) 447, 1483
BfrI CTTAAG 1 cut(s) 1187
BfuAI ACCTGC 1 cut(s) 1513
BisI GCNGC 9 cut(s) 288, 291, 605, 981, 1478, 1689, 1745, 1862, 2364
BlpI GCTNAGC 1 cut(s) 1356
BlsI GCNGC 9 cut(s) 289, 292, 606, 982, 1479, 1690, 1746, 1863, 2365
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 3 cut(s) 250, 386, 1131
Bme18I GGWCC 1 cut(s) 82
BmgT120I GGNCC 2 cut(s) 53, 82
BmrFI CCNGG 3 cut(s) 250, 386, 1131
BmrI ACTGGG 1 cut(s) 11
BmsI GCATC 2 cut(s) 795, 1692
BmuI ACTGGG 1 cut(s) 11
BpiI GAAGAC 1 cut(s) 2082
BplI GAGNNNNNCTC 2 cut(s) 1430, 1462
Bpu10I CCTNAGC 1 cut(s) 1179
Bpu1102I GCTNAGC 1 cut(s) 1356
Bpu14I TTCGAA 1 cut(s) 2176
BpuEI CTTGAG 5 cut(s) 52, 1450, 1476, 1769, 2253
BpuMI CCSGG 1 cut(s) 250
BsaAI YACGTR 1 cut(s) 1609
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 4 cut(s) 357, 609, 986, 2390
BsaWI WCCGGW 3 cut(s) 766, 935, 2436
BsaXI ACNNNNNCTCC 6 cut(s) 404, 434, 2289, 2319, 2378, 2408
Bsc4I CCNNNNNNNGG 3 cut(s) 184, 779, 935
Bse118I RCCGGY 1 cut(s) 173
Bse1I ACTGG 5 cut(s) 17, 50, 151, 1381, 1466
Bse3DI GCAATG 2 cut(s) 1021, 2427
BseBI CCWGG 2 cut(s) 386, 1131
BseDI CCNNGG 4 cut(s) 357, 609, 986, 2390
BseGI GGATG 6 cut(s) 547, 568, 922, 1297, 1653, 2461
BseLI CCNNNNNNNGG 3 cut(s) 184, 779, 935
BseMI GCAATG 2 cut(s) 1021, 2427
BseMII CTCAG 5 cut(s) 510, 996, 1170, 1845, 2046
BseNI ACTGG 5 cut(s) 17, 50, 151, 1381, 1466
BsePI GCGCGC 1 cut(s) 352
BseRI GAGGAG 2 cut(s) 78, 1196
BseSI GKGCMC 3 cut(s) 1079, 1936, 2310
BseX3I CGGCCG 1 cut(s) 175
BseXI GCAGC 5 cut(s) 967, 1489, 1675, 1848, 2350
BseYI CCCAGC 2 cut(s) 655, 2401
BsgI GTGCAG 1 cut(s) 1496
Bsh1236I CGCG 6 cut(s) 201, 279, 352, 354, 476, 2430
Bsh1285I CGRYCG 2 cut(s) 178, 767
BshFI GGCC 7 cut(s) 54, 177, 192, 267, 450, 1129, 1246
BshNI GGYRCC 3 cut(s) 164, 639, 2585
BsiEI CGRYCG 2 cut(s) 178, 767
BsiHKAI GWGCWC 2 cut(s) 1936, 2269
BsiSI CCGG 6 cut(s) 162, 174, 250, 767, 936, 2437
BslFI GGGAC 1 cut(s) 326
BslI CCNNNNNNNGG 3 cut(s) 184, 779, 935
BsmAI GTCTC 2 cut(s) 1592, 1825
BsmFI GGGAC 1 cut(s) 326
BsmI GAATGC 2 cut(s) 1324, 1424
BsnI GGCC 7 cut(s) 54, 177, 192, 267, 450, 1129, 1246
Bsp119I TTCGAA 1 cut(s) 2176
Bsp1286I GDGCHC 4 cut(s) 1079, 1936, 2269, 2310
Bsp1720I GCTNAGC 1 cut(s) 1356
Bsp19I CCATGG 1 cut(s) 2390
BspANI GGCC 7 cut(s) 54, 177, 192, 267, 450, 1129, 1246
BspCNI CTCAG 5 cut(s) 511, 997, 1171, 1844, 2045
BspFNI CGCG 6 cut(s) 201, 279, 352, 354, 476, 2430
BspMAI CTGCAG 2 cut(s) 456, 1524
BspMI ACCTGC 1 cut(s) 1513
BspPI GGATC 2 cut(s) 1170, 2433
BspT104I TTCGAA 1 cut(s) 2176
BspT107I GGYRCC 3 cut(s) 164, 639, 2585
BspTI CTTAAG 1 cut(s) 1187
BsrDI GCAATG 2 cut(s) 1021, 2427
BsrFI RCCGGY 1 cut(s) 173
BsrI ACTGG 5 cut(s) 17, 50, 151, 1381, 1466
BssAI RCCGGY 1 cut(s) 173
BssECI CCNNGG 4 cut(s) 357, 609, 986, 2390
BssHII GCGCGC 1 cut(s) 352
BssNI GRCGYC 1 cut(s) 312
BssT1I CCWWGG 4 cut(s) 357, 609, 986, 2390
Bst2UI CCWGG 2 cut(s) 386, 1131
Bst4CI ACNGT 7 cut(s) 538, 584, 869, 1220, 1638, 1720, 2314
Bst6I CTCTTC 6 cut(s) 32, 702, 707, 1658, 2193, 2490
BstACI GRCGYC 1 cut(s) 312
BstAFI CTTAAG 1 cut(s) 1187
BstBAI YACGTR 1 cut(s) 1609
BstBI TTCGAA 1 cut(s) 2176
BstC8I GCNNGC 7 cut(s) 354, 448, 452, 574, 1484, 1488, 1520
BstDEI CTNAG 8 cut(s) 519, 776, 1005, 1179, 1356, 1724, 1831, 2032
BstDSI CCRYGG 1 cut(s) 2390
BstENI CCTNNNNNAGG 1 cut(s) 777
BstF5I GGATG 6 cut(s) 547, 568, 922, 1297, 1653, 2461
BstFNI CGCG 6 cut(s) 201, 279, 352, 354, 476, 2430
BstH2I RGCGCY 2 cut(s) 447, 1483
BstHHI GCGC 8 cut(s) 281, 354, 356, 446, 985, 1300, 1482, 1977
BstMAI GTCTC 2 cut(s) 1592, 1825
BstMCI CGRYCG 2 cut(s) 178, 767
BstMWI GCNNNNNNNGC 8 cut(s) 198, 287, 296, 360, 601, 637, 1483, 2543
BstNI CCWGG 2 cut(s) 386, 1131
BstNSI RCATGY 1 cut(s) 118
BstSCI CCNGG 3 cut(s) 248, 384, 1129
BstSFI CTRYAG 3 cut(s) 452, 1520, 1593
BstSLI GKGCMC 3 cut(s) 1079, 1936, 2310
BstUI CGCG 6 cut(s) 201, 279, 352, 354, 476, 2430
BstV1I GCAGC 5 cut(s) 967, 1489, 1675, 1848, 2350
BstV2I GAAGAC 1 cut(s) 2082
BstZI CGGCCG 1 cut(s) 175
BsuRI GGCC 7 cut(s) 54, 177, 192, 267, 450, 1129, 1246
BtgI CCRYGG 1 cut(s) 2390
BtgZI GCGATG 2 cut(s) 115, 509
BtsCI GGATG 6 cut(s) 547, 568, 922, 1297, 1653, 2461
BtsIMutI CAGTG 3 cut(s) 43, 1716, 2144
BveI ACCTGC 1 cut(s) 1513
Cac8I GCNNGC 7 cut(s) 354, 448, 452, 574, 1484, 1488, 1520
CfoI GCGC 8 cut(s) 281, 354, 356, 446, 985, 1300, 1482, 1977
Cfr10I RCCGGY 1 cut(s) 173
Cfr13I GGNCC 2 cut(s) 53, 82
CseI GACGC 2 cut(s) 320, 482
Csp6I GTAC 6 cut(s) 154, 529, 1195, 1721, 1755, 2204
CspCI CAANNNNNGTGG 2 cut(s) 1051, 1086
CviAII CATG 5 cut(s) 115, 1098, 2086, 2391, 2608
CviQI GTAC 6 cut(s) 154, 529, 1195, 1721, 1755, 2204
DdeI CTNAG 8 cut(s) 519, 776, 1005, 1179, 1356, 1724, 1831, 2032
EaeI YGGCCR 3 cut(s) 175, 265, 1244
EagI CGGCCG 1 cut(s) 175
Eam1104I CTCTTC 6 cut(s) 32, 702, 707, 1658, 2193, 2490
EarI CTCTTC 6 cut(s) 32, 702, 707, 1658, 2193, 2490
Ecl136II GAGCTC 1 cut(s) 2267
EclXI CGGCCG 1 cut(s) 175
Eco130I CCWWGG 4 cut(s) 357, 609, 986, 2390
Eco24I GRGCYC 1 cut(s) 2269
Eco47I GGWCC 1 cut(s) 82
Eco52I CGGCCG 1 cut(s) 175
Eco53kI GAGCTC 1 cut(s) 2267
Eco57I CTGAAG 4 cut(s) 1644, 1955, 2322, 2351
EcoICRI GAGCTC 1 cut(s) 2267
EcoNI CCTNNNNNAGG 1 cut(s) 777
EcoO109I RGGNCCY 1 cut(s) 53
EcoRI GAATTC 1 cut(s) 679
EcoRII CCWGG 2 cut(s) 384, 1129
EcoT14I CCWWGG 4 cut(s) 357, 609, 986, 2390
EcoT38I GRGCYC 1 cut(s) 2269
ErhI CCWWGG 4 cut(s) 357, 609, 986, 2390
FaeI CATG 5 cut(s) 118, 1101, 2089, 2394, 2611
FaqI GGGAC 1 cut(s) 326
FatI CATG 5 cut(s) 114, 1097, 2085, 2390, 2607
FauI CCCGC 2 cut(s) 1272, 1491
FbaI TGATCA 1 cut(s) 618
FblI GTMKAC 1 cut(s) 1037
Fnu4HI GCNGC 9 cut(s) 288, 291, 605, 981, 1478, 1689, 1745, 1862, 2364
FokI GGATG 6 cut(s) 554, 575, 929, 1304, 1660, 2468
FriOI GRGCYC 1 cut(s) 2269
Fsp4HI GCNGC 9 cut(s) 288, 291, 605, 981, 1478, 1689, 1745, 1862, 2364
FspBI CTAG 4 cut(s) 873, 1112, 1125, 2367
GlaI GCGC 8 cut(s) 280, 353, 355, 445, 984, 1299, 1481, 1976
GluI GCNGC 9 cut(s) 288, 291, 605, 981, 1478, 1689, 1745, 1862, 2364
GsaI CCCAGC 2 cut(s) 659, 2405
HaeII RGCGCY 2 cut(s) 447, 1483
HaeIII GGCC 7 cut(s) 54, 177, 192, 267, 450, 1129, 1246
HapII CCGG 6 cut(s) 162, 174, 250, 767, 936, 2437
HgaI GACGC 2 cut(s) 320, 482
HhaI GCGC 8 cut(s) 281, 354, 356, 446, 985, 1300, 1482, 1977
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 5 cut(s) 118, 1101, 2089, 2394, 2611
Hin6I GCGC 8 cut(s) 279, 352, 354, 444, 983, 1298, 1480, 1975
HinP1I GCGC 8 cut(s) 279, 352, 354, 444, 983, 1298, 1480, 1975
HincII GTYRAC 2 cut(s) 741, 1209
HindII GTYRAC 2 cut(s) 741, 1209
HindIII AAGCTT 3 cut(s) 1468, 1950, 2544
HpaI GTTAAC 1 cut(s) 1209
HpaII CCGG 6 cut(s) 162, 174, 250, 767, 936, 2437
HphI GGTGA 5 cut(s) 163, 514, 923, 1883, 2426
Hpy166II GTNNAC 8 cut(s) 391, 741, 1038, 1062, 1209, 1634, 1934, 2434
Hpy188III TCNNGA 6 cut(s) 11, 31, 1390, 1429, 2195, 2340
Hpy8I GTNNAC 8 cut(s) 391, 741, 1038, 1062, 1209, 1634, 1934, 2434
Hpy99I CGWCG 3 cut(s) 332, 413, 476
HpyCH4III ACNGT 7 cut(s) 538, 584, 869, 1220, 1638, 1720, 2314
HpyCH4IV ACGT 3 cut(s) 997, 1608, 1630
HpyCH4V TGCA 9 cut(s) 454, 794, 1477, 1522, 1864, 1896, 1934, 2324, 2564
HpyF10VI GCNNNNNNNGC 8 cut(s) 198, 287, 296, 360, 601, 637, 1483, 2543
HpyF3I CTNAG 8 cut(s) 519, 776, 1005, 1179, 1356, 1724, 1831, 2032
HpySE526I ACGT 3 cut(s) 997, 1608, 1630
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 5 cut(s) 118, 1101, 2089, 2394, 2611
HspAI GCGC 8 cut(s) 279, 352, 354, 444, 983, 1298, 1480, 1975
Ksp22I TGATCA 1 cut(s) 618
KspAI GTTAAC 1 cut(s) 1209
LmnI GCTCC 7 cut(s) 592, 601, 628, 769, 977, 1183, 2386
Lsp1109I GCAGC 5 cut(s) 967, 1489, 1675, 1848, 2350
LweI GCATC 2 cut(s) 795, 1692
MaeI CTAG 4 cut(s) 873, 1112, 1125, 2367
MaeII ACGT 3 cut(s) 997, 1608, 1630
MaeIII GTNAC 6 cut(s) 1102, 1339, 1372, 1496, 1788, 2511
MhlI GDGCHC 4 cut(s) 1079, 1936, 2269, 2310
MlsI TGGCCA 1 cut(s) 1246
MluCI AATT 9 cut(s) 679, 745, 1068, 1449, 1613, 1678, 1708, 1890, 2171
MluNI TGGCCA 1 cut(s) 1246
MlyI GAGTC 4 cut(s) 71, 246, 811, 1162
MmeI TCCRAC 6 cut(s) 124, 129, 249, 570, 1827, 2364
Mox20I TGGCCA 1 cut(s) 1246
MscI TGGCCA 1 cut(s) 1246
MseI TTAA 6 cut(s) 372, 1188, 1208, 1260, 1308, 1452
MslI CAYNNNNRTG 1 cut(s) 113
Msp20I TGGCCA 1 cut(s) 1246
MspA1I CMGCKG 2 cut(s) 2216, 2363
MspCI CTTAAG 1 cut(s) 1187
MspI CCGG 6 cut(s) 162, 174, 250, 767, 936, 2437
MspR9I CCNGG 3 cut(s) 250, 386, 1131
Mva1269I GAATGC 2 cut(s) 1324, 1424
MvaI CCWGG 2 cut(s) 386, 1131
MvnI CGCG 6 cut(s) 201, 279, 352, 354, 476, 2430
MwoI GCNNNNNNNGC 8 cut(s) 198, 287, 296, 360, 601, 637, 1483, 2543
NciI CCSGG 1 cut(s) 250
NcoI CCATGG 1 cut(s) 2390
NlaIII CATG 5 cut(s) 118, 1101, 2089, 2394, 2611
NmeAIII GCCGAG 2 cut(s) 99, 203
NmuCI GTSAC 2 cut(s) 1339, 1788
NspI RCATGY 1 cut(s) 118
NspV TTCGAA 1 cut(s) 2176
PauI GCGCGC 1 cut(s) 352
PcsI WCGNNNNNNNCGW 3 cut(s) 270, 279, 336
PctI GAATGC 2 cut(s) 1324, 1424
PfeI GAWTC 8 cut(s) 147, 221, 336, 376, 405, 1760, 2126, 2134
PkrI GCNGC 9 cut(s) 289, 292, 606, 982, 1479, 1690, 1746, 1863, 2365
PleI GAGTC 4 cut(s) 71, 245, 811, 1162
PpsI GAGTC 4 cut(s) 71, 245, 811, 1162
Ppu21I YACGTR 1 cut(s) 1609
Psp124BI GAGCTC 1 cut(s) 2269
Psp6I CCWGG 2 cut(s) 384, 1129
PspFI CCCAGC 2 cut(s) 655, 2401
PspGI CCWGG 2 cut(s) 384, 1129
PspPI GGNCC 2 cut(s) 53, 82
PstI CTGCAG 2 cut(s) 456, 1524
PteI GCGCGC 1 cut(s) 352
PvuII CAGCTG 1 cut(s) 2216
RsaI GTAC 6 cut(s) 155, 530, 1196, 1722, 1756, 2205
RsaNI GTAC 6 cut(s) 154, 529, 1195, 1721, 1755, 2204
RseI CAYNNNNRTG 1 cut(s) 113
SacI GAGCTC 1 cut(s) 2269
SaqAI TTAA 6 cut(s) 372, 1188, 1208, 1260, 1308, 1452
SatI GCNGC 9 cut(s) 288, 291, 605, 981, 1478, 1689, 1745, 1862, 2364
Sau96I GGNCC 2 cut(s) 53, 82
SbfI CCTGCAGG 1 cut(s) 1524
ScaI AGTACT 1 cut(s) 155
SchI GAGTC 4 cut(s) 71, 246, 811, 1162
ScrFI CCNGG 3 cut(s) 250, 386, 1131
SdaI CCTGCAGG 1 cut(s) 1524
SduI GDGCHC 4 cut(s) 1079, 1936, 2269, 2310
SfaNI GCATC 2 cut(s) 795, 1692
SfcI CTRYAG 3 cut(s) 452, 1520, 1593
SfuI TTCGAA 1 cut(s) 2176
SinI GGWCC 1 cut(s) 82
SmiMI CAYNNNNRTG 1 cut(s) 113
SmlI CTYRAG 6 cut(s) 31, 1187, 1429, 1491, 1784, 2268
SmoI CTYRAG 6 cut(s) 31, 1187, 1429, 1491, 1784, 2268
Sse8387I CCTGCAGG 1 cut(s) 1524
Sse9I AATT 9 cut(s) 679, 745, 1068, 1449, 1613, 1678, 1708, 1890, 2171
SspMI CTAG 4 cut(s) 873, 1112, 1125, 2367
SstI GAGCTC 1 cut(s) 2269
StyD4I CCNGG 3 cut(s) 248, 384, 1129
StyI CCWWGG 4 cut(s) 357, 609, 986, 2390
TaaI ACNGT 7 cut(s) 538, 584, 869, 1220, 1638, 1720, 2314
TaiI ACGT 3 cut(s) 1000, 1611, 1633
TaqI TCGA 8 cut(s) 39, 273, 330, 408, 1094, 1171, 2176, 2482
TasI AATT 9 cut(s) 679, 745, 1068, 1449, 1613, 1678, 1708, 1890, 2171
TatI WGTACW 3 cut(s) 153, 1720, 1754
TauI GCSGC 4 cut(s) 290, 293, 607, 1747
TfiI GAWTC 8 cut(s) 147, 221, 336, 376, 405, 1760, 2126, 2134
Tru1I TTAA 6 cut(s) 372, 1188, 1208, 1260, 1308, 1452
Tru9I TTAA 6 cut(s) 372, 1188, 1208, 1260, 1308, 1452
TscAI CASTG 3 cut(s) 50, 1723, 2151
TseFI GTSAC 2 cut(s) 1339, 1788
TseI GCWGC 5 cut(s) 980, 1477, 1688, 1861, 2363
Tsp45I GTSAC 2 cut(s) 1339, 1788
TspDTI ATGAA 2 cut(s) 474, 918
TspGWI ACGGA 2 cut(s) 412, 687
TspRI CASTG 3 cut(s) 50, 1723, 2151
Vha464I CTTAAG 1 cut(s) 1187
VneI GTGCAC 1 cut(s) 1932
VpaK11BI GGWCC 1 cut(s) 82
XagI CCTNNNNNAGG 1 cut(s) 777
XapI RAATTY 1 cut(s) 679
XceI RCATGY 1 cut(s) 118
XmiI GTMKAC 1 cut(s) 1037
XspI CTAG 4 cut(s) 873, 1112, 1125, 2367
ZrmI AGTACT 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.