SWI SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G05130 |
| fragaria_vesca | FvH4_5g29290 |
| malus_domestica | MD15G1139300.v1.1 |
| prunus_persica | Prupe.7G028900_v2.0.a1 |
| pyrus_communis | pycom520g00520 |
| rosa_chinensis | RchiOBHm_Chr7g0222151 |
| rosa_laevigata | RLG00000002088 |
| rosa_multiflora | Rmu_sc0009183.1_g000008 |
| rosa_roxburghii | Rroxscaffold_3G00237370 |
| rosa_rugosa | Rorug07G0205700 |
| rosa_samantha | Rh7BG336900 Rh7DG345000 |
| rosa_wichuraiana | Rw7G029390 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1712 |
| Acc36I | ACCTGC | 1 cut(s) | 1519 |
| AccB1I | GGYRCC | 3 cut(s) | 158, 938, 956 |
| AccBSI | CCGCTC | 2 cut(s) | 53, 1171 |
| AccI | GTMKAC | 1 cut(s) | 1235 |
| AccII | CGCG | 2 cut(s) | 195, 346 |
| AciI | CCGC | 7 cut(s) | 29, 51, 193, 282, 1171, 1285, 1555 |
| AclI | AACGTT | 1 cut(s) | 1070 |
| AclWI | GGATC | 4 cut(s) | 2439, 2453, 2583, 2607 |
| AcoI | YGGCCR | 1 cut(s) | 169 |
| AcsI | RAATTY | 5 cut(s) | 141, 310, 676, 1243, 2288 |
| AcuI | CTGAAG | 3 cut(s) | 236, 1961, 2328 |
| AfaI | GTAC | 4 cut(s) | 870, 1060, 1160, 1728 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 178, 773, 2563 |
| AflII | CTTAAG | 1 cut(s) | 1193 |
| AhlI | ACTAGT | 1 cut(s) | 1349 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 635, 667, 1947, 1979 |
| AleI | CACNNNNGTG | 1 cut(s) | 1766 |
| Alw21I | GWGCWC | 1 cut(s) | 1942 |
| Alw26I | GTCTC | 3 cut(s) | 87, 1598, 2339 |
| AlwI | GGATC | 4 cut(s) | 2439, 2453, 2583, 2607 |
| AoxI | GGCC | 5 cut(s) | 169, 354, 1133, 2592, 2608 |
| ApeKI | GCWGC | 7 cut(s) | 448, 1002, 1483, 1843, 1867, 2369, 2567 |
| ApoI | RAATTY | 5 cut(s) | 141, 310, 676, 1243, 2288 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 261, 293, 802, 834 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 408 |
| AspLEI | GCGC | 5 cut(s) | 348, 1488, 1713, 1983, 2241 |
| AspS9I | GGNCC | 1 cut(s) | 2592 |
| AsuC2I | CCSGG | 1 cut(s) | 1137 |
| AsuHPI | GGTGA | 8 cut(s) | 629, 695, 902, 1300, 1640, 1889, 2308, 2432 |
| AsuII | TTCGAA | 1 cut(s) | 1808 |
| BaeGI | GKGCMC | 6 cut(s) | 339, 943, 1085, 1781, 2275, 2316 |
| BanI | GGYRCC | 3 cut(s) | 158, 938, 956 |
| BanII | GRGCYC | 1 cut(s) | 1518 |
| BbsI | GAAGAC | 2 cut(s) | 1035, 2088 |
| Bbv12I | GWGCWC | 1 cut(s) | 1942 |
| BbvCI | CCTCAGC | 1 cut(s) | 1185 |
| BbvI | GCAGC | 7 cut(s) | 460, 1014, 1495, 1830, 1854, 2356, 2554 |
| BccI | CCATC | 9 cut(s) | 170, 233, 651, 707, 1400, 1420, 1648, 1868, 2240 |
| BceAI | ACGGC | 2 cut(s) | 269, 1995 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 449, 483 |
| BciVI | GTATCC | 1 cut(s) | 982 |
| BclI | TGATCA | 2 cut(s) | 615, 1648 |
| BcnI | CCSGG | 1 cut(s) | 1137 |
| BcoDI | GTCTC | 3 cut(s) | 87, 1598, 2339 |
| BcuI | ACTAGT | 1 cut(s) | 1349 |
| BfaI | CTAG | 5 cut(s) | 872, 1118, 1131, 1176, 1350 |
| BfmI | CTRYAG | 2 cut(s) | 1526, 2409 |
| BfoI | RGCGCY | 1 cut(s) | 1489 |
| BfrI | CTTAAG | 1 cut(s) | 1193 |
| BfuAI | ACCTGC | 1 cut(s) | 1519 |
| BfuI | GTATCC | 1 cut(s) | 982 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2616 |
| BglII | AGATCT | 1 cut(s) | 1755 |
| BisI | GCNGC | 8 cut(s) | 282, 449, 1003, 1484, 1844, 1868, 2370, 2568 |
| BlpI | GCTNAGC | 1 cut(s) | 1362 |
| BlsI | GCNGC | 8 cut(s) | 283, 450, 1004, 1485, 1845, 1869, 2371, 2569 |
| Bme1390I | CCNGG | 1 cut(s) | 1137 |
| BmgT120I | GGNCC | 1 cut(s) | 2592 |
| BmiI | GGNNCC | 9 cut(s) | 160, 526, 600, 765, 940, 958, 2394, 2405, 2593 |
| BmrFI | CCNGG | 1 cut(s) | 1137 |
| BmrI | ACTGGG | 1 cut(s) | 2170 |
| BmsI | GCATC | 4 cut(s) | 457, 1743, 2141, 2178 |
| BmuI | ACTGGG | 1 cut(s) | 2170 |
| BpiI | GAAGAC | 2 cut(s) | 1035, 2088 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1185 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1362 |
| Bpu14I | TTCGAA | 1 cut(s) | 1808 |
| BpuEI | CTTGAG | 1 cut(s) | 2321 |
| BpuMI | CCSGG | 1 cut(s) | 1137 |
| BsaJI | CCNNGG | 4 cut(s) | 96, 486, 2396, 2595 |
| BsaWI | WCCGGW | 2 cut(s) | 760, 2442 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1372, 1402, 2384, 2414 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 178, 773, 2563 |
| Bse118I | RCCGGY | 1 cut(s) | 959 |
| Bse1I | ACTGG | 5 cut(s) | 20, 498, 1387, 1472, 2176 |
| Bse3DI | GCAATG | 2 cut(s) | 1186, 2433 |
| BseDI | CCNNGG | 4 cut(s) | 96, 486, 2396, 2595 |
| BseGI | GGATG | 6 cut(s) | 520, 544, 662, 901, 1303, 1392 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 178, 773, 2563 |
| BseMI | GCAATG | 2 cut(s) | 1186, 2433 |
| BseMII | CTCAG | 4 cut(s) | 168, 975, 1176, 2052 |
| BseNI | ACTGG | 5 cut(s) | 20, 498, 1387, 1472, 2176 |
| BseRI | GAGGAG | 3 cut(s) | 25, 575, 1202 |
| BseSI | GKGCMC | 6 cut(s) | 339, 943, 1085, 1781, 2275, 2316 |
| BseXI | GCAGC | 7 cut(s) | 460, 1014, 1495, 1830, 1854, 2356, 2554 |
| BsgI | GTGCAG | 2 cut(s) | 1502, 1744 |
| Bsh1236I | CGCG | 2 cut(s) | 195, 346 |
| Bsh1285I | CGRYCG | 1 cut(s) | 761 |
| BshFI | GGCC | 5 cut(s) | 171, 356, 1135, 2594, 2610 |
| BshNI | GGYRCC | 3 cut(s) | 158, 938, 956 |
| BsiEI | CGRYCG | 1 cut(s) | 761 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1942 |
| BsiSI | CCGG | 4 cut(s) | 761, 960, 1136, 2443 |
| BslFI | GGGAC | 3 cut(s) | 1983, 2316, 2597 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 178, 773, 2563 |
| BsmAI | GTCTC | 3 cut(s) | 87, 1598, 2339 |
| BsmFI | GGGAC | 3 cut(s) | 1983, 2316, 2597 |
| BsmI | GAATGC | 2 cut(s) | 1430, 2263 |
| BsnI | GGCC | 5 cut(s) | 171, 356, 1135, 2594, 2610 |
| Bsp119I | TTCGAA | 1 cut(s) | 1808 |
| Bsp1286I | GDGCHC | 8 cut(s) | 339, 943, 1085, 1518, 1781, 1942, 2275, 2316 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1362 |
| Bsp19I | CCATGG | 1 cut(s) | 2396 |
| BspACI | CCGC | 7 cut(s) | 29, 51, 193, 282, 1171, 1285, 1555 |
| BspANI | GGCC | 5 cut(s) | 171, 356, 1135, 2594, 2610 |
| BspCNI | CTCAG | 4 cut(s) | 167, 976, 1177, 2051 |
| BspFNI | CGCG | 2 cut(s) | 195, 346 |
| BspLI | GGNNCC | 9 cut(s) | 160, 526, 600, 765, 940, 958, 2394, 2405, 2593 |
| BspMAI | CTGCAG | 2 cut(s) | 1530, 2413 |
| BspMI | ACCTGC | 1 cut(s) | 1519 |
| BspPI | GGATC | 4 cut(s) | 2439, 2453, 2583, 2607 |
| BspQI | GCTCTTC | 1 cut(s) | 2199 |
| BspT104I | TTCGAA | 1 cut(s) | 1808 |
| BspT107I | GGYRCC | 3 cut(s) | 158, 938, 956 |
| BspTI | CTTAAG | 1 cut(s) | 1193 |
| BsrBI | CCGCTC | 2 cut(s) | 53, 1171 |
| BsrDI | GCAATG | 2 cut(s) | 1186, 2433 |
| BsrFI | RCCGGY | 1 cut(s) | 959 |
| BsrI | ACTGG | 5 cut(s) | 20, 498, 1387, 1472, 2176 |
| BssAI | RCCGGY | 1 cut(s) | 959 |
| BssECI | CCNNGG | 4 cut(s) | 96, 486, 2396, 2595 |
| BssT1I | CCWWGG | 1 cut(s) | 2396 |
| Bst4CI | ACNGT | 6 cut(s) | 1644, 1726, 1892, 2063, 2074, 2092 |
| Bst6I | CTCTTC | 3 cut(s) | 699, 2199, 2496 |
| BstAFI | CTTAAG | 1 cut(s) | 1193 |
| BstBI | TTCGAA | 1 cut(s) | 1808 |
| BstC8I | GCNNGC | 3 cut(s) | 571, 1000, 2328 |
| BstDEI | CTNAG | 9 cut(s) | 154, 351, 770, 984, 1185, 1362, 1730, 2038, 2242 |
| BstDSI | CCRYGG | 1 cut(s) | 2396 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 771 |
| BstF5I | GGATG | 6 cut(s) | 520, 544, 662, 901, 1303, 1392 |
| BstFNI | CGCG | 2 cut(s) | 195, 346 |
| BstH2I | RGCGCY | 1 cut(s) | 1489 |
| BstHHI | GCGC | 5 cut(s) | 348, 1488, 1713, 1983, 2241 |
| BstMAI | GTCTC | 3 cut(s) | 87, 1598, 2339 |
| BstMCI | CGRYCG | 1 cut(s) | 761 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 290, 343, 425, 590, 763, 2549, 2616 |
| BstSCI | CCNGG | 1 cut(s) | 1135 |
| BstSFI | CTRYAG | 2 cut(s) | 1526, 2409 |
| BstSLI | GKGCMC | 6 cut(s) | 339, 943, 1085, 1781, 2275, 2316 |
| BstUI | CGCG | 2 cut(s) | 195, 346 |
| BstV1I | GCAGC | 7 cut(s) | 460, 1014, 1495, 1830, 1854, 2356, 2554 |
| BstV2I | GAAGAC | 2 cut(s) | 1035, 2088 |
| BstX2I | RGATCY | 2 cut(s) | 1755, 2599 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 535 |
| BstYI | RGATCY | 2 cut(s) | 1755, 2599 |
| BsuI | GTATCC | 1 cut(s) | 982 |
| BsuRI | GGCC | 5 cut(s) | 171, 356, 1135, 2594, 2610 |
| BtgI | CCRYGG | 1 cut(s) | 2396 |
| BtgZI | GCGATG | 1 cut(s) | 109 |
| BtsCI | GGATG | 6 cut(s) | 520, 544, 662, 901, 1303, 1392 |
| BtsIMutI | CAGTG | 8 cut(s) | 13, 172, 491, 747, 1722, 1761, 2068, 2210 |
| BveI | ACCTGC | 1 cut(s) | 1519 |
| Cac8I | GCNNGC | 3 cut(s) | 571, 1000, 2328 |
| CfoI | GCGC | 5 cut(s) | 348, 1488, 1713, 1983, 2241 |
| Cfr10I | RCCGGY | 1 cut(s) | 959 |
| Cfr13I | GGNCC | 1 cut(s) | 2592 |
| CseI | GACGC | 1 cut(s) | 459 |
| Csp6I | GTAC | 4 cut(s) | 869, 1059, 1159, 1727 |
| CviAII | CATG | 6 cut(s) | 109, 1009, 1309, 1499, 2397, 2614 |
| CviQI | GTAC | 4 cut(s) | 869, 1059, 1159, 1727 |
| DdeI | CTNAG | 9 cut(s) | 154, 351, 770, 984, 1185, 1362, 1730, 2038, 2242 |
| EaeI | YGGCCR | 1 cut(s) | 169 |
| Eam1104I | CTCTTC | 3 cut(s) | 699, 2199, 2496 |
| EarI | CTCTTC | 3 cut(s) | 699, 2199, 2496 |
| EciI | GGCGGA | 1 cut(s) | 18 |
| Eco130I | CCWWGG | 1 cut(s) | 2396 |
| Eco24I | GRGCYC | 1 cut(s) | 1518 |
| Eco57I | CTGAAG | 3 cut(s) | 236, 1961, 2328 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 771 |
| EcoRI | GAATTC | 2 cut(s) | 141, 676 |
| EcoT14I | CCWWGG | 1 cut(s) | 2396 |
| EcoT38I | GRGCYC | 1 cut(s) | 1518 |
| ErhI | CCWWGG | 1 cut(s) | 2396 |
| FaeI | CATG | 6 cut(s) | 112, 1012, 1312, 1502, 2400, 2617 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1502, 1534 |
| FaqI | GGGAC | 3 cut(s) | 1983, 2316, 2597 |
| FatI | CATG | 6 cut(s) | 108, 1008, 1308, 1498, 2396, 2613 |
| FauI | CCCGC | 2 cut(s) | 58, 1278 |
| FbaI | TGATCA | 2 cut(s) | 615, 1648 |
| FblI | GTMKAC | 1 cut(s) | 1235 |
| Fnu4HI | GCNGC | 8 cut(s) | 282, 449, 1003, 1484, 1844, 1868, 2370, 2568 |
| FokI | GGATG | 6 cut(s) | 527, 551, 669, 908, 1310, 1379 |
| FriOI | GRGCYC | 1 cut(s) | 1518 |
| Fsp4HI | GCNGC | 8 cut(s) | 282, 449, 1003, 1484, 1844, 1868, 2370, 2568 |
| FspBI | CTAG | 5 cut(s) | 872, 1118, 1131, 1176, 1350 |
| FspI | TGCGCA | 1 cut(s) | 1712 |
| GlaI | GCGC | 5 cut(s) | 347, 1487, 1712, 1982, 2240 |
| GluI | GCNGC | 8 cut(s) | 282, 449, 1003, 1484, 1844, 1868, 2370, 2568 |
| HaeII | RGCGCY | 1 cut(s) | 1489 |
| HaeIII | GGCC | 5 cut(s) | 171, 356, 1135, 2594, 2610 |
| HapII | CCGG | 4 cut(s) | 761, 960, 1136, 2443 |
| HgaI | GACGC | 1 cut(s) | 459 |
| HhaI | GCGC | 5 cut(s) | 348, 1488, 1713, 1983, 2241 |
| Hin1II | CATG | 6 cut(s) | 112, 1012, 1312, 1502, 2400, 2617 |
| Hin6I | GCGC | 5 cut(s) | 346, 1486, 1711, 1981, 2239 |
| HinP1I | GCGC | 5 cut(s) | 346, 1486, 1711, 1981, 2239 |
| HincII | GTYRAC | 2 cut(s) | 1215, 1640 |
| HindII | GTYRAC | 2 cut(s) | 1215, 1640 |
| HindIII | AAGCTT | 3 cut(s) | 1474, 1956, 2550 |
| HinfI | GANTC | 7 cut(s) | 74, 215, 305, 370, 461, 899, 1256 |
| HpaII | CCGG | 4 cut(s) | 761, 960, 1136, 2443 |
| HphI | GGTGA | 8 cut(s) | 629, 695, 902, 1300, 1640, 1889, 2308, 2432 |
| Hpy166II | GTNNAC | 6 cut(s) | 385, 637, 1215, 1236, 1640, 2440 |
| Hpy188III | TCNNGA | 7 cut(s) | 367, 733, 966, 1396, 2201, 2346, 2557 |
| Hpy8I | GTNNAC | 6 cut(s) | 385, 637, 1215, 1236, 1640, 2440 |
| Hpy99I | CGWCG | 2 cut(s) | 326, 2083 |
| HpyCH4III | ACNGT | 6 cut(s) | 1644, 1726, 1892, 2063, 2074, 2092 |
| HpyCH4IV | ACGT | 3 cut(s) | 1070, 1636, 2586 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 290, 343, 425, 590, 763, 2549, 2616 |
| HpyF3I | CTNAG | 9 cut(s) | 154, 351, 770, 984, 1185, 1362, 1730, 2038, 2242 |
| HpySE526I | ACGT | 3 cut(s) | 1070, 1636, 2586 |
| Hsp92II | CATG | 6 cut(s) | 112, 1012, 1312, 1502, 2400, 2617 |
| HspAI | GCGC | 5 cut(s) | 346, 1486, 1711, 1981, 2239 |
| Ksp22I | TGATCA | 2 cut(s) | 615, 1648 |
| LguI | GCTCTTC | 1 cut(s) | 2199 |
| LmnI | GCTCC | 4 cut(s) | 763, 1189, 2140, 2392 |
| Lsp1109I | GCAGC | 7 cut(s) | 460, 1014, 1495, 1830, 1854, 2356, 2554 |
| LweI | GCATC | 4 cut(s) | 457, 1743, 2141, 2178 |
| MaeI | CTAG | 5 cut(s) | 872, 1118, 1131, 1176, 1350 |
| MaeII | ACGT | 3 cut(s) | 1070, 1636, 2586 |
| MaeIII | GTNAC | 7 cut(s) | 260, 1108, 1345, 1378, 1685, 2063, 2296 |
| MbiI | CCGCTC | 2 cut(s) | 53, 1171 |
| MflI | RGATCY | 2 cut(s) | 1755, 2599 |
| MhlI | GDGCHC | 8 cut(s) | 339, 943, 1085, 1518, 1781, 1942, 2275, 2316 |
| MlyI | GAGTC | 1 cut(s) | 299 |
| MmeI | TCCRAC | 3 cut(s) | 118, 243, 2370 |
| MroXI | GAANNNNTTC | 1 cut(s) | 408 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1766 |
| MspA1I | CMGCKG | 3 cut(s) | 451, 2222, 2369 |
| MspCI | CTTAAG | 1 cut(s) | 1193 |
| MspI | CCGG | 4 cut(s) | 761, 960, 1136, 2443 |
| MspR9I | CCNGG | 1 cut(s) | 1137 |
| Mva1269I | GAATGC | 2 cut(s) | 1430, 2263 |
| MvnI | CGCG | 2 cut(s) | 195, 346 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 290, 343, 425, 590, 763, 2549, 2616 |
| NciI | CCSGG | 1 cut(s) | 1137 |
| NcoI | CCATGG | 1 cut(s) | 2396 |
| NlaIII | CATG | 6 cut(s) | 112, 1012, 1312, 1502, 2400, 2617 |
| NlaIV | GGNNCC | 9 cut(s) | 160, 526, 600, 765, 940, 958, 2394, 2405, 2593 |
| NmeAIII | GCCGAG | 3 cut(s) | 93, 197, 2620 |
| NmuCI | GTSAC | 3 cut(s) | 260, 2063, 2296 |
| NsbI | TGCGCA | 1 cut(s) | 1712 |
| NspV | TTCGAA | 1 cut(s) | 1808 |
| OliI | CACNNNNGTG | 1 cut(s) | 1766 |
| PciSI | GCTCTTC | 1 cut(s) | 2199 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 132, 2592 |
| PctI | GAATGC | 2 cut(s) | 1430, 2263 |
| PdmI | GAANNNNTTC | 1 cut(s) | 408 |
| PfeI | GAWTC | 6 cut(s) | 74, 215, 370, 461, 899, 1256 |
| PkrI | GCNGC | 8 cut(s) | 283, 450, 1004, 1485, 1845, 1869, 2371, 2569 |
| PleI | GAGTC | 1 cut(s) | 299 |
| PpsI | GAGTC | 1 cut(s) | 299 |
| Psp1406I | AACGTT | 1 cut(s) | 1070 |
| PspN4I | GGNNCC | 9 cut(s) | 160, 526, 600, 765, 940, 958, 2394, 2405, 2593 |
| PspPI | GGNCC | 1 cut(s) | 2592 |
| PstI | CTGCAG | 2 cut(s) | 1530, 2413 |
| PsuI | RGATCY | 2 cut(s) | 1755, 2599 |
| PvuII | CAGCTG | 3 cut(s) | 451, 2222, 2369 |
| RsaI | GTAC | 4 cut(s) | 870, 1060, 1160, 1728 |
| RsaNI | GTAC | 4 cut(s) | 869, 1059, 1159, 1727 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1766 |
| SapI | GCTCTTC | 1 cut(s) | 2199 |
| SatI | GCNGC | 8 cut(s) | 282, 449, 1003, 1484, 1844, 1868, 2370, 2568 |
| Sau96I | GGNCC | 1 cut(s) | 2592 |
| SchI | GAGTC | 1 cut(s) | 299 |
| ScrFI | CCNGG | 1 cut(s) | 1137 |
| SduI | GDGCHC | 8 cut(s) | 339, 943, 1085, 1518, 1781, 1942, 2275, 2316 |
| SfaNI | GCATC | 4 cut(s) | 457, 1743, 2141, 2178 |
| SfcI | CTRYAG | 2 cut(s) | 1526, 2409 |
| SfuI | TTCGAA | 1 cut(s) | 1808 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1766 |
| SmlI | CTYRAG | 2 cut(s) | 1193, 2336 |
| SmoI | CTYRAG | 2 cut(s) | 1193, 2336 |
| SpeI | ACTAGT | 1 cut(s) | 1349 |
| SsiI | CCGC | 7 cut(s) | 29, 51, 193, 282, 1171, 1285, 1555 |
| SspI | AATATT | 1 cut(s) | 1816 |
| SspMI | CTAG | 5 cut(s) | 872, 1118, 1131, 1176, 1350 |
| StyD4I | CCNGG | 1 cut(s) | 1135 |
| StyI | CCWWGG | 1 cut(s) | 2396 |
| TaaI | ACNGT | 6 cut(s) | 1644, 1726, 1892, 2063, 2074, 2092 |
| TaiI | ACGT | 3 cut(s) | 1073, 1639, 2589 |
| TaqI | TCGA | 9 cut(s) | 9, 267, 303, 308, 324, 1100, 1808, 2081, 2488 |
| TatI | WGTACW | 2 cut(s) | 1158, 1726 |
| TauI | GCSGC | 1 cut(s) | 284 |
| TfiI | GAWTC | 6 cut(s) | 74, 215, 370, 461, 899, 1256 |
| TscAI | CASTG | 8 cut(s) | 20, 172, 498, 754, 1729, 1768, 2068, 2217 |
| TseFI | GTSAC | 3 cut(s) | 260, 2063, 2296 |
| TseI | GCWGC | 7 cut(s) | 448, 1002, 1483, 1843, 1867, 2369, 2567 |
| Tsp45I | GTSAC | 3 cut(s) | 260, 2063, 2296 |
| TspDTI | ATGAA | 4 cut(s) | 97, 531, 903, 2270 |
| TspGWI | ACGGA | 3 cut(s) | 310, 363, 1931 |
| TspRI | CASTG | 8 cut(s) | 20, 172, 498, 754, 1729, 1768, 2068, 2217 |
| Vha464I | CTTAAG | 1 cut(s) | 1193 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 771 |
| XapI | RAATTY | 5 cut(s) | 141, 310, 676, 1243, 2288 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1006 |
| XmiI | GTMKAC | 1 cut(s) | 1235 |
| XmnI | GAANNNNTTC | 1 cut(s) | 408 |
| XspI | CTAG | 5 cut(s) | 872, 1118, 1131, 1176, 1350 |