AT5G05220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013545
Physical Location & Seq
Forward (+)
1550251 .. 1551022
772 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G05220.1

Sequence Viewer

Length: 549 bp
ATGGAAGCTATCTCTCAAACCTGCACAAAGATCATCACCAACCCATCTCAGAGGATATATAAAACCTCATCTCCAGTCACGGCAATTCCACAAACAAAGCTGAGCCTTAAAGTCAAGAAGGAGAGGTGGGTTGCTGCTGCTAGATGCGTGGCTTCAGGATCGGATTATGCTGCGGCAATGGAGCCAATTACGCCGGAGGAAGAGGAGGAATTGACTCAGAGAAGAGGGATATGTGGTGGAGAAGTAAACAGAGGAGTATGGGAGCTCTTGGAGTGCCTTGAGAAAGAAGCTATTATGGGGAATGATGATGGGAGAGATCCTAGAGATTACAATAGAAGAGCAAAGATTTTTGACAAGAGTTCTAAGATCTTCAAGAACTTAAATGAACAGAGAGATCAGGCTCCTGTTGATTACCTTGAGAAGGAAGCTATCATGGGGGCTGATGATGGGAAGGACCCTAAAGATTATAACAGAAGAGCAAAGATTTTTGACAAGAGTTCTAAGATCTTCAAGAACATCAAAGAACAGAGAGAGCAGTCTCCAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.73

Weight (kDa)

7.57

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013545)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05220
fragaria_vesca FvH4_7g26070
malus_domestica MD01G1169200.v1.1 MD07G1235100.v1.1
prunus_persica Prupe.2G265400_v2.0.a1
pyrus_communis pycom01g18190 pycom07g21260
rosa_chinensis RchiOBHm_Chr1g0372481
rosa_laevigata RLG00000026895
rosa_multiflora Rmu_sc0005410.1_g000002 Rmu_sc0011709.1_g000007
rosa_roxburghii Rroxscaffold_4G00284890
rosa_rugosa Rorug01G0372300.1
rosa_samantha Rh1AG380800 Rh1BG344400 Rh1CG357800 Rh1DG375600
rosa_wichuraiana Rw1G033500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
Acc36I ACCTGC 1 cut(s) 29
AciI CCGC 1 cut(s) 173
AclWI GGATC 2 cut(s) 166, 311
AcuI CTGAAG 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 2 cut(s) 373, 511
AluBI AGCT 5 cut(s) 8, 100, 265, 290, 428
AluI AGCT 5 cut(s) 8, 100, 265, 290, 428
Alw21I GWGCWC 1 cut(s) 267
Alw26I GTCTC 1 cut(s) 543
AlwI GGATC 2 cut(s) 166, 311
ApeKI GCWGC 3 cut(s) 134, 137, 170
AspS9I GGNCC 1 cut(s) 454
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 1 cut(s) 454
BanII GRGCYC 1 cut(s) 267
Bbv12I GWGCWC 1 cut(s) 267
BbvI GCAGC 3 cut(s) 121, 124, 157
BccI CCATC 3 cut(s) 52, 302, 440
BceAI ACGGC 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 543
BfaI CTAG 2 cut(s) 141, 321
BfuAI ACCTGC 1 cut(s) 29
BglII AGATCT 2 cut(s) 366, 504
BisI GCNGC 4 cut(s) 135, 138, 171, 174
BlpI GCTNAGC 1 cut(s) 101
BlsI GCNGC 4 cut(s) 136, 139, 172, 175
Bme18I GGWCC 1 cut(s) 454
BmgT120I GGNCC 1 cut(s) 454
BmiI GGNNCC 3 cut(s) 183, 402, 456
BmsI GCATC 1 cut(s) 134
BpmI CTGGAG 2 cut(s) 57, 525
Bpu1102I GCTNAGC 1 cut(s) 101
BpuEI CTTGAG 2 cut(s) 299, 437
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse1I ACTGG 1 cut(s) 74
Bse3DI GCAATG 1 cut(s) 183
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 3 cut(s) 62, 92, 230
BseNI ACTGG 1 cut(s) 74
BseRI GAGGAG 2 cut(s) 218, 267
BseXI GCAGC 3 cut(s) 121, 124, 157
BsgI GTGCAG 1 cut(s) 7
BsiHKAI GWGCWC 1 cut(s) 267
BsiSI CCGG 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 1 cut(s) 543
Bsp1286I GDGCHC 1 cut(s) 267
Bsp143I GATC 6 cut(s) 30, 158, 316, 366, 394, 504
Bsp1720I GCTNAGC 1 cut(s) 101
BspACI CCGC 1 cut(s) 173
BspCNI CTCAG 3 cut(s) 61, 93, 229
BspLI GGNNCC 3 cut(s) 183, 402, 456
BspMI ACCTGC 1 cut(s) 29
BspPI GGATC 2 cut(s) 166, 311
BspQI GCTCTTC 2 cut(s) 331, 469
BsrDI GCAATG 1 cut(s) 183
BsrI ACTGG 1 cut(s) 74
BssMI GATC 6 cut(s) 30, 158, 316, 366, 394, 504
Bst6I CTCTTC 4 cut(s) 195, 217, 331, 469
BstDEI CTNAG 5 cut(s) 48, 101, 216, 363, 501
BstENI CCTNNNNNAGG 1 cut(s) 419
BstKTI GATC 6 cut(s) 33, 161, 319, 369, 397, 507
BstMAI GTCTC 1 cut(s) 543
BstMBI GATC 6 cut(s) 30, 158, 316, 366, 394, 504
BstMWI GCNNNNNNNGC 1 cut(s) 190
BstV1I GCAGC 3 cut(s) 121, 124, 157
BstX2I RGATCY 3 cut(s) 316, 366, 504
BstYI RGATCY 3 cut(s) 316, 366, 504
BveI ACCTGC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 454
CviAII CATG 1 cut(s) 433
DdeI CTNAG 5 cut(s) 48, 101, 216, 363, 501
DpnI GATC 6 cut(s) 32, 160, 318, 368, 396, 506
DpnII GATC 6 cut(s) 30, 158, 316, 366, 394, 504
Eam1104I CTCTTC 4 cut(s) 195, 217, 331, 469
EarI CTCTTC 4 cut(s) 195, 217, 331, 469
Ecl136II GAGCTC 1 cut(s) 265
Eco24I GRGCYC 1 cut(s) 267
Eco47I GGWCC 1 cut(s) 454
Eco53kI GAGCTC 1 cut(s) 265
Eco57I CTGAAG 1 cut(s) 138
EcoICRI GAGCTC 1 cut(s) 265
EcoNI CCTNNNNNAGG 1 cut(s) 419
EcoO109I RGGNCCY 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 267
FaeI CATG 1 cut(s) 436
FaiI YATR 8 cut(s) 58, 60, 168, 232, 259, 296, 434, 468
FatI CATG 1 cut(s) 432
Fnu4HI GCNGC 4 cut(s) 135, 138, 171, 174
FriOI GRGCYC 1 cut(s) 267
Fsp4HI GCNGC 4 cut(s) 135, 138, 171, 174
FspBI CTAG 2 cut(s) 141, 321
GluI GCNGC 4 cut(s) 135, 138, 171, 174
GsuI CTGGAG 2 cut(s) 57, 525
HapII CCGG 1 cut(s) 194
Hin1II CATG 1 cut(s) 436
HinfI GANTC 1 cut(s) 214
HpaII CCGG 1 cut(s) 194
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 247
Hpy188I TCNGA 3 cut(s) 51, 163, 219
Hpy188III TCNNGA 5 cut(s) 115, 156, 373, 511, 542
Hpy8I GTNNAC 1 cut(s) 247
HpyAV CCTTC 3 cut(s) 112, 415, 445
HpyCH4V TGCA 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 1 cut(s) 190
HpyF3I CTNAG 5 cut(s) 48, 101, 216, 363, 501
Hsp92II CATG 1 cut(s) 436
Kzo9I GATC 6 cut(s) 30, 158, 316, 366, 394, 504
LguI GCTCTTC 2 cut(s) 331, 469
LmnI GCTCC 3 cut(s) 181, 262, 406
LpnPI CCDG 6 cut(s) 34, 87, 141, 207, 383, 417
Lsp1109I GCAGC 3 cut(s) 121, 124, 157
LweI GCATC 1 cut(s) 134
MaeI CTAG 2 cut(s) 141, 321
MaeIII GTNAC 1 cut(s) 76
MalI GATC 6 cut(s) 32, 160, 318, 368, 396, 506
MboI GATC 6 cut(s) 30, 158, 316, 366, 394, 504
MboII GAAGA 6 cut(s) 212, 234, 348, 361, 486, 499
MflI RGATCY 3 cut(s) 316, 366, 504
MhlI GDGCHC 1 cut(s) 267
MluCI AATT 3 cut(s) 84, 186, 209
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 8 cut(s) 45, 76, 117, 190, 196, 199, 218, 245
MseI TTAA 2 cut(s) 108, 380
MspI CCGG 1 cut(s) 194
MwoI GCNNNNNNNGC 1 cut(s) 190
NdeII GATC 6 cut(s) 30, 158, 316, 366, 394, 504
NlaIII CATG 1 cut(s) 436
NlaIV GGNNCC 3 cut(s) 183, 402, 456
NmuCI GTSAC 1 cut(s) 76
PciSI GCTCTTC 2 cut(s) 331, 469
PkrI GCNGC 4 cut(s) 136, 139, 172, 175
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PpuMI RGGWCCY 1 cut(s) 454
PsiI TTATAA 1 cut(s) 468
Psp124BI GAGCTC 1 cut(s) 267
Psp5II RGGWCCY 1 cut(s) 454
PspN4I GGNNCC 3 cut(s) 183, 402, 456
PspPI GGNCC 1 cut(s) 454
PspPPI RGGWCCY 1 cut(s) 454
PsuI RGATCY 3 cut(s) 316, 366, 504
SacI GAGCTC 1 cut(s) 267
SapI GCTCTTC 2 cut(s) 331, 469
SaqAI TTAA 2 cut(s) 108, 380
SatI GCNGC 4 cut(s) 135, 138, 171, 174
Sau3AI GATC 6 cut(s) 30, 158, 316, 366, 394, 504
Sau96I GGNCC 1 cut(s) 454
SchI GAGTC 1 cut(s) 208
SduI GDGCHC 1 cut(s) 267
SetI ASST 9 cut(s) 10, 23, 68, 102, 128, 267, 292, 417, 430
SfaNI GCATC 1 cut(s) 134
SinI GGWCC 1 cut(s) 454
SmlI CTYRAG 2 cut(s) 278, 416
SmoI CTYRAG 2 cut(s) 278, 416
Sse9I AATT 3 cut(s) 84, 186, 209
SsiI CCGC 1 cut(s) 173
SspMI CTAG 2 cut(s) 141, 321
SstI GAGCTC 1 cut(s) 267
TasI AATT 3 cut(s) 84, 186, 209
TauI GCSGC 1 cut(s) 176
Tru1I TTAA 2 cut(s) 108, 380
Tru9I TTAA 2 cut(s) 108, 380
TseFI GTSAC 1 cut(s) 76
TseI GCWGC 3 cut(s) 134, 137, 170
Tsp45I GTSAC 1 cut(s) 76
TspDTI ATGAA 1 cut(s) 399
VpaK11BI GGWCC 1 cut(s) 454
XagI CCTNNNNNAGG 1 cut(s) 419
XspI CTAG 2 cut(s) 141, 321
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.