Prupe.2G265400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0013545
Physical Location & Seq
Reverse (-)
27228567 .. 27229409
843 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G265400.1

Sequence Viewer

Length: 474 bp
ATGGAGCTCTCTCTGTGTCACACAAAAACACACAACTTTTGCTCTTCTTCTATCCGCACACACAAAACCAGAGACCCTTCAACTCTCAACCCTTCTTGGGGATTGAGACTTAGGCCATGGCAGAATCATGGGTTAAGCTTAATGCAGCAAAGAGTGGATCACAAGAAATCATCATCAGCAATGGTGGTTCGATGTGTAGACACCGGTTGTTCGTCGGGGCCGGTGAGCGAGATAGAAGGAGAGCTGGAGACCGAGATTCGACCAGAAGACGGAGCAGAGGAGTGGCTGAGAGTAGGGAGGCTGAGAGAGAAGTGTGGAGACAGAGGAATGGTGGAGCTGTTGGAATGTTTGGAACGTGAAGCCATCATGGGAGAAGATGAAGGCAAGGAACCCAGTGACTACAACAGAAGGGCTCAGATCTTTTATAAGAGTTCCAGAGTTTTCCAGGCTCTCAAGGAACGTAACCAGTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

18.0

Weight (kDa)

6.53

Isoelectric Point (pI)

54.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013545)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05220
fragaria_vesca FvH4_7g26070
malus_domestica MD01G1169200.v1.1 MD07G1235100.v1.1
prunus_persica Prupe.2G265400_v2.0.a1
pyrus_communis pycom01g18190 pycom07g21260
rosa_chinensis RchiOBHm_Chr1g0372481
rosa_laevigata RLG00000026895
rosa_multiflora Rmu_sc0005410.1_g000002 Rmu_sc0011709.1_g000007
rosa_roxburghii Rroxscaffold_4G00284890
rosa_rugosa Rorug01G0372300.1
rosa_samantha Rh1AG380800 Rh1BG344400 Rh1CG357800 Rh1DG375600
rosa_wichuraiana Rw1G033500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 426
AccI GTMKAC 1 cut(s) 198
AciI CCGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 165
AfiI CCNNNNNNNGG 3 cut(s) 97, 98, 269
AgeI ACCGGT 1 cut(s) 203
AgsI TTSAA 1 cut(s) 81
AjnI CCWGG 1 cut(s) 444
AluBI AGCT 4 cut(s) 7, 138, 244, 337
AluI AGCT 4 cut(s) 7, 138, 244, 337
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 4 cut(s) 66, 100, 242, 312
AlwI GGATC 1 cut(s) 165
AoxI GGCC 2 cut(s) 113, 218
ApeKI GCWGC 1 cut(s) 145
AsiGI ACCGGT 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 235
BanII GRGCYC 2 cut(s) 9, 415
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 157
BccI CCATC 1 cut(s) 371
BciT130I CCWGG 1 cut(s) 446
BcoDI GTCTC 4 cut(s) 66, 100, 242, 312
BglII AGATCT 1 cut(s) 417
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 219, 390
BmrFI CCNGG 1 cut(s) 446
BmrI ACTGGG 1 cut(s) 387
BmuI ACTGGG 1 cut(s) 387
BpiI GAAGAC 1 cut(s) 273
BpmI CTGGAG 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 437
BsaI GGTCTC 2 cut(s) 66, 242
BsaJI CCNNGG 1 cut(s) 116
BsaWI WCCGGW 1 cut(s) 203
Bsc4I CCNNNNNNNGG 3 cut(s) 97, 98, 269
Bse118I RCCGGY 2 cut(s) 203, 220
Bse1I ACTGG 2 cut(s) 393, 466
Bse3DI GCAATG 1 cut(s) 186
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 116
BseLI CCNNNNNNNGG 3 cut(s) 97, 98, 269
BseMI GCAATG 1 cut(s) 186
BseMII CTCAG 3 cut(s) 278, 293, 428
BseNI ACTGG 2 cut(s) 393, 466
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 157
BshFI GGCC 2 cut(s) 115, 220
BshTI ACCGGT 1 cut(s) 203
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 2 cut(s) 204, 221
BslI CCNNNNNNNGG 3 cut(s) 97, 98, 269
BsmAI GTCTC 4 cut(s) 66, 100, 242, 312
BsnI GGCC 2 cut(s) 115, 220
Bso31I GGTCTC 2 cut(s) 66, 242
Bsp1286I GDGCHC 2 cut(s) 9, 415
Bsp143I GATC 2 cut(s) 157, 417
Bsp19I CCATGG 1 cut(s) 116
BspACI CCGC 1 cut(s) 55
BspANI GGCC 2 cut(s) 115, 220
BspCNI CTCAG 3 cut(s) 279, 294, 427
BspLI GGNNCC 2 cut(s) 219, 390
BspPI GGATC 1 cut(s) 165
BspQI GCTCTTC 1 cut(s) 49
BspTNI GGTCTC 2 cut(s) 66, 242
BsrDI GCAATG 1 cut(s) 186
BsrFI RCCGGY 2 cut(s) 203, 220
BsrI ACTGG 2 cut(s) 393, 466
BssAI RCCGGY 2 cut(s) 203, 220
BssECI CCNNGG 1 cut(s) 116
BssMI GATC 2 cut(s) 157, 417
BssT1I CCWWGG 1 cut(s) 116
Bst2UI CCWGG 1 cut(s) 446
Bst6I CTCTTC 1 cut(s) 49
BstDEI CTNAG 4 cut(s) 110, 287, 302, 414
BstDSI CCRYGG 1 cut(s) 116
BstKTI GATC 2 cut(s) 160, 420
BstMAI GTCTC 4 cut(s) 66, 100, 242, 312
BstMBI GATC 2 cut(s) 157, 417
BstNI CCWGG 1 cut(s) 446
BstSCI CCNGG 1 cut(s) 444
BstV1I GCAGC 1 cut(s) 157
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 417
BstYI RGATCY 1 cut(s) 417
BsuRI GGCC 2 cut(s) 115, 220
BtgI CCRYGG 1 cut(s) 116
BtsIMutI CAGTG 1 cut(s) 400
Cfr10I RCCGGY 2 cut(s) 203, 220
Cfr13I GGNCC 1 cut(s) 218
CspAI ACCGGT 1 cut(s) 203
CviAII CATG 3 cut(s) 117, 128, 367
DdeI CTNAG 4 cut(s) 110, 287, 302, 414
DpnI GATC 2 cut(s) 159, 419
DpnII GATC 2 cut(s) 157, 417
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 7
Eco130I CCWWGG 1 cut(s) 116
Eco24I GRGCYC 2 cut(s) 9, 415
Eco31I GGTCTC 2 cut(s) 66, 242
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoRII CCWGG 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 116
EcoT38I GRGCYC 2 cut(s) 9, 415
ErhI CCWWGG 1 cut(s) 116
FaeI CATG 3 cut(s) 120, 131, 370
FaiI YATR 4 cut(s) 118, 129, 368, 426
FatI CATG 3 cut(s) 116, 127, 366
FblI GTMKAC 1 cut(s) 198
Fnu4HI GCNGC 1 cut(s) 146
FriOI GRGCYC 2 cut(s) 9, 415
Fsp4HI GCNGC 1 cut(s) 146
GluI GCNGC 1 cut(s) 146
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 2 cut(s) 115, 220
HapII CCGG 2 cut(s) 204, 221
Hin1II CATG 3 cut(s) 120, 131, 370
HindIII AAGCTT 1 cut(s) 136
HinfI GANTC 2 cut(s) 124, 256
HpaII CCGG 2 cut(s) 204, 221
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 199
Hpy188I TCNGA 1 cut(s) 417
Hpy188III TCNNGA 2 cut(s) 435, 471
Hpy8I GTNNAC 1 cut(s) 199
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 5 cut(s) 87, 102, 230, 374, 402
HpyCH4IV ACGT 2 cut(s) 355, 460
HpyCH4V TGCA 1 cut(s) 145
HpyF3I CTNAG 4 cut(s) 110, 287, 302, 414
HpySE526I ACGT 2 cut(s) 355, 460
Hsp92II CATG 3 cut(s) 120, 131, 370
Kzo9I GATC 2 cut(s) 157, 417
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 3 cut(s) 4, 272, 334
LpnPI CCDG 9 cut(s) 82, 217, 230, 234, 276, 406, 431, 448, 458
Lsp1109I GCAGC 1 cut(s) 157
MaeII ACGT 2 cut(s) 355, 460
MaeIII GTNAC 3 cut(s) 17, 395, 461
MalI GATC 2 cut(s) 159, 419
MboI GATC 2 cut(s) 157, 417
MboII GAAGA 4 cut(s) 36, 39, 278, 386
MflI RGATCY 1 cut(s) 417
MhlI GDGCHC 2 cut(s) 9, 415
MmeI TCCRAC 1 cut(s) 321
MnlI CCTC 3 cut(s) 271, 291, 317
MseI TTAA 2 cut(s) 134, 140
MspI CCGG 2 cut(s) 204, 221
MspR9I CCNGG 1 cut(s) 446
MvaI CCWGG 1 cut(s) 446
NcoI CCATGG 1 cut(s) 116
NdeII GATC 2 cut(s) 157, 417
NlaIII CATG 3 cut(s) 120, 131, 370
NlaIV GGNNCC 2 cut(s) 219, 390
NmuCI GTSAC 2 cut(s) 17, 395
PciSI GCTCTTC 1 cut(s) 49
PfeI GAWTC 2 cut(s) 124, 256
PinAI ACCGGT 1 cut(s) 203
PkrI GCNGC 1 cut(s) 147
PsiI TTATAA 1 cut(s) 426
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 444
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 2 cut(s) 219, 390
PspPI GGNCC 1 cut(s) 218
PsuI RGATCY 1 cut(s) 417
SacI GAGCTC 1 cut(s) 9
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 2 cut(s) 134, 140
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 2 cut(s) 157, 417
Sau96I GGNCC 1 cut(s) 218
ScrFI CCNGG 1 cut(s) 446
SduI GDGCHC 2 cut(s) 9, 415
SetI ASST 6 cut(s) 9, 140, 246, 339, 358, 463
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
SsiI CCGC 1 cut(s) 55
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 444
StyI CCWWGG 1 cut(s) 116
TaiI ACGT 2 cut(s) 358, 463
TaqI TCGA 2 cut(s) 190, 259
TaqII GACCGA 1 cut(s) 266
TfiI GAWTC 2 cut(s) 124, 256
Tru1I TTAA 2 cut(s) 134, 140
Tru9I TTAA 2 cut(s) 134, 140
TscAI CASTG 1 cut(s) 400
TseFI GTSAC 2 cut(s) 17, 395
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 2 cut(s) 17, 395
TspDTI ATGAA 1 cut(s) 393
TspGWI ACGGA 1 cut(s) 285
TspRI CASTG 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.