pycom07g21260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0013545
Physical Location & Seq
Reverse (-)
23053487 .. 23053936
450 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g21260.1

Sequence Viewer

Length: 450 bp
ATGGAGCTCTCTCTGTGCCACACAAAAACGCACAATTTCTGCCCTTCCATCCTCCCCACACGCACAGCCAAAACCCCTGCAACTCCCAACAATTTAGGGTTCAGACCTAGGAACTGGCAGAACCATGGGGCGATCTTAAGGCAGGAAAGCTTGGACCGCAAGAAACCGGCGGTGGCGGCGAGGTGCGGAGACGAGGGATGCTCAGCCGAGGTGGAAAGCGAGTTGGAGGCGGAGTTGCGGGCGGAAGAAGGAGCGGAGTGGATGAGGGACGGGAGGTGGAGCGAGAAGTGCGGAGATAGAGGAATGGTGGAGCTTCTGGAGTGTTTGGAGCGTGAGGCGATCATGGGGGAAGACGAAGGCAAAGAACCCGACGACTACAACAGAAGGGCTCAAATATTTTACAAGAGCTCTAGGGTTTTTCAGGCTCTCAAGAAACGTTCCCAATCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

16.99

Weight (kDa)

5.99

Isoelectric Point (pI)

57.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013545)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05220
fragaria_vesca FvH4_7g26070
malus_domestica MD01G1169200.v1.1 MD07G1235100.v1.1
prunus_persica Prupe.2G265400_v2.0.a1
pyrus_communis pycom01g18190 pycom07g21260
rosa_chinensis RchiOBHm_Chr1g0372481
rosa_laevigata RLG00000026895
rosa_multiflora Rmu_sc0005410.1_g000002 Rmu_sc0011709.1_g000007
rosa_roxburghii Rroxscaffold_4G00284890
rosa_rugosa Rorug01G0372300.1
rosa_samantha Rh1AG380800 Rh1BG344400 Rh1CG357800 Rh1DG375600
rosa_wichuraiana Rw1G033500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 254
AciI CCGC 9 cut(s) 157, 170, 176, 186, 230, 238, 242, 254, 291
AclI AACGTT 1 cut(s) 436
AflII CTTAAG 1 cut(s) 136
AluBI AGCT 4 cut(s) 7, 150, 313, 408
AluI AGCT 4 cut(s) 7, 150, 313, 408
Alw21I GWGCWC 2 cut(s) 9, 410
Alw26I GTCTC 1 cut(s) 183
AspA2I CCTAGG 1 cut(s) 107
AspS9I GGNCC 1 cut(s) 154
AvaII GGWCC 1 cut(s) 154
AvrII CCTAGG 1 cut(s) 107
BanII GRGCYC 3 cut(s) 9, 391, 410
BbsI GAAGAC 1 cut(s) 357
Bbv12I GWGCWC 2 cut(s) 9, 410
BccI CCATC 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 183
BfaI CTAG 2 cut(s) 108, 411
BfrI CTTAAG 1 cut(s) 136
BisI GCNGC 1 cut(s) 177
BlnI CCTAGG 1 cut(s) 107
BlpI GCTNAGC 1 cut(s) 202
BlsI GCNGC 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmsI GCATC 1 cut(s) 188
BpiI GAAGAC 1 cut(s) 357
BplI GAGNNNNNCTC 2 cut(s) 185, 217
BpmI CTGGAG 1 cut(s) 338
Bpu1102I GCTNAGC 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 413
BsaJI CCNNGG 3 cut(s) 107, 124, 207
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bse118I RCCGGY 1 cut(s) 166
Bse1I ACTGG 1 cut(s) 119
BseDI CCNNGG 3 cut(s) 107, 124, 207
BseGI GGATG 3 cut(s) 48, 203, 267
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 1 cut(s) 119
BsiHKAI GWGCWC 2 cut(s) 9, 410
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 183
BsmBI CGTCTC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 281
Bsp1286I GDGCHC 3 cut(s) 9, 391, 410
Bsp143I GATC 2 cut(s) 132, 339
Bsp1720I GCTNAGC 1 cut(s) 202
Bsp19I CCATGG 1 cut(s) 124
BspACI CCGC 9 cut(s) 157, 170, 176, 186, 230, 238, 242, 254, 291
BspCNI CTCAG 1 cut(s) 215
BspTI CTTAAG 1 cut(s) 136
BsrBI CCGCTC 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 166
BsrI ACTGG 1 cut(s) 119
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 3 cut(s) 107, 124, 207
BssMI GATC 2 cut(s) 132, 339
BssT1I CCWWGG 2 cut(s) 107, 124
BstAFI CTTAAG 1 cut(s) 136
BstC8I GCNNGC 1 cut(s) 240
BstDEI CTNAG 1 cut(s) 202
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 3 cut(s) 48, 203, 267
BstKTI GATC 2 cut(s) 135, 342
BstMAI GTCTC 1 cut(s) 183
BstMBI GATC 2 cut(s) 132, 339
BstMWI GCNNNNNNNGC 3 cut(s) 156, 176, 288
BstV2I GAAGAC 1 cut(s) 357
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 3 cut(s) 48, 203, 267
Cac8I GCNNGC 1 cut(s) 240
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 1 cut(s) 154
CviAII CATG 2 cut(s) 125, 343
CviJI RGCY 8 cut(s) 7, 68, 150, 206, 313, 389, 408, 425
CviKI_1 RGCY 8 cut(s) 7, 68, 150, 206, 313, 389, 408, 425
DdeI CTNAG 1 cut(s) 202
DpnI GATC 2 cut(s) 134, 341
DpnII GATC 2 cut(s) 132, 339
EciI GGCGGA 2 cut(s) 245, 257
Ecl136II GAGCTC 2 cut(s) 7, 408
Eco130I CCWWGG 2 cut(s) 107, 124
Eco24I GRGCYC 3 cut(s) 9, 391, 410
Eco47I GGWCC 1 cut(s) 154
Eco53kI GAGCTC 2 cut(s) 7, 408
EcoICRI GAGCTC 2 cut(s) 7, 408
EcoT14I CCWWGG 2 cut(s) 107, 124
EcoT38I GRGCYC 3 cut(s) 9, 391, 410
ErhI CCWWGG 2 cut(s) 107, 124
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 2 cut(s) 128, 346
FaiI YATR 2 cut(s) 126, 344
FaqI GGGAC 1 cut(s) 281
FatI CATG 2 cut(s) 124, 342
FauI CCCGC 1 cut(s) 231
Fnu4HI GCNGC 1 cut(s) 177
FokI GGATG 3 cut(s) 35, 210, 274
FriOI GRGCYC 3 cut(s) 9, 391, 410
Fsp4HI GCNGC 1 cut(s) 177
FspBI CTAG 2 cut(s) 108, 411
GluI GCNGC 1 cut(s) 177
GsuI CTGGAG 1 cut(s) 338
HapII CCGG 1 cut(s) 167
Hin1II CATG 2 cut(s) 128, 346
HindIII AAGCTT 1 cut(s) 148
HpaII CCGG 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 3 cut(s) 317, 430, 447
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 4 cut(s) 54, 242, 350, 378
HpyCH4IV ACGT 1 cut(s) 436
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 3 cut(s) 156, 176, 288
HpyF3I CTNAG 1 cut(s) 202
HpySE526I ACGT 1 cut(s) 436
Hsp92II CATG 2 cut(s) 128, 346
Kzo9I GATC 2 cut(s) 132, 339
LmnI GCTCC 5 cut(s) 4, 251, 279, 310, 328
LpnPI CCDG 6 cut(s) 90, 100, 128, 180, 302, 407
LweI GCATC 1 cut(s) 188
MaeI CTAG 2 cut(s) 108, 411
MaeII ACGT 1 cut(s) 436
MalI GATC 2 cut(s) 134, 341
MbiI CCGCTC 1 cut(s) 254
MboI GATC 2 cut(s) 132, 339
MboII GAAGA 2 cut(s) 257, 362
MhlI GDGCHC 3 cut(s) 9, 391, 410
MluCI AATT 2 cut(s) 34, 91
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 9 cut(s) 62, 174, 187, 202, 220, 258, 267, 293, 328
MseI TTAA 1 cut(s) 137
MspCI CTTAAG 1 cut(s) 136
MspI CCGG 1 cut(s) 167
MwoI GCNNNNNNNGC 3 cut(s) 156, 176, 288
NcoI CCATGG 1 cut(s) 124
NdeII GATC 2 cut(s) 132, 339
NlaIII CATG 2 cut(s) 128, 346
NmeAIII GCCGAG 1 cut(s) 232
PkrI GCNGC 1 cut(s) 178
Psp124BI GAGCTC 2 cut(s) 9, 410
Psp1406I AACGTT 1 cut(s) 436
PspPI GGNCC 1 cut(s) 154
SacI GAGCTC 2 cut(s) 9, 410
SaqAI TTAA 1 cut(s) 137
SatI GCNGC 1 cut(s) 177
Sau3AI GATC 2 cut(s) 132, 339
Sau96I GGNCC 1 cut(s) 154
SduI GDGCHC 3 cut(s) 9, 391, 410
SetI ASST 9 cut(s) 9, 109, 152, 185, 213, 278, 315, 410, 439
SfaNI GCATC 1 cut(s) 188
SinI GGWCC 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 136, 428
SmoI CTYRAG 2 cut(s) 136, 428
Sse9I AATT 2 cut(s) 34, 91
SsiI CCGC 9 cut(s) 157, 170, 176, 186, 230, 238, 242, 254, 291
SspI AATATT 1 cut(s) 396
SspMI CTAG 2 cut(s) 108, 411
SstI GAGCTC 2 cut(s) 9, 410
StyI CCWWGG 2 cut(s) 107, 124
TaiI ACGT 1 cut(s) 439
TasI AATT 2 cut(s) 34, 91
TauI GCSGC 1 cut(s) 179
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
Vha464I CTTAAG 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 154
XmaJI CCTAGG 1 cut(s) 107
XspI CTAG 2 cut(s) 108, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.