pycom01g18190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0013545
Physical Location & Seq
Reverse (-)
17271232 .. 17271681
450 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g18190.1

Sequence Viewer

Length: 450 bp
ATGGAGATCCCTCTCTGTCGCACAAAAACGCTCAACTTTCGCCCAACCATCCTCCCCACACGCACAGCCAGGGCCCCTACAACTCCCAACAGTTTAGGTTTGAGGCCTAGGACCTGGCAGAACCGTGGGGCGATCTTCAGCCAGCAAAGCTTGGACCGCAAGAAACCGGCGGTGGCGGTGAGGTGCGGGGACGTGGAATGCTCATCCGAGGTGGAAAGCGAATTGGAGGCGGAGCTGCGGCCGGAAGAAGAAGAGGAGTGGATGAGGGAAGGGAGGTGGAGCGAGAAGTGCGGAGACAGAGGAGTGGTGGAGCTTTTGGAATGTTTGGAGCGTGAAGCGATCATGGGGGAAGATGAAGGCAAAGAACCTAACGACTACCATAGAAGGGCTCAAATATTTTACAAGAGCTCTAGGGTTTTTCAGGCTCTCAAGAAACGTTCCCAATCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.24

Weight (kDa)

6.64

Isoelectric Point (pI)

69.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013545)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05220
fragaria_vesca FvH4_7g26070
malus_domestica MD01G1169200.v1.1 MD07G1235100.v1.1
prunus_persica Prupe.2G265400_v2.0.a1
pyrus_communis pycom01g18190 pycom07g21260
rosa_chinensis RchiOBHm_Chr1g0372481
rosa_laevigata RLG00000026895
rosa_multiflora Rmu_sc0005410.1_g000002 Rmu_sc0011709.1_g000007
rosa_roxburghii Rroxscaffold_4G00284890
rosa_rugosa Rorug01G0372300.1
rosa_samantha Rh1AG380800 Rh1BG344400 Rh1CG357800 Rh1DG375600
rosa_wichuraiana Rw1G033500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 157, 170, 176, 186, 230, 238, 291
AclI AACGTT 1 cut(s) 436
AcoI YGGCCR 1 cut(s) 239
AcuI CTGAAG 1 cut(s) 121
AfiI CCNNNNNNNGG 1 cut(s) 385
AjiI CACGTC 1 cut(s) 193
AjnI CCWGG 2 cut(s) 68, 113
AluBI AGCT 4 cut(s) 150, 235, 313, 408
AluI AGCT 4 cut(s) 150, 235, 313, 408
Alw21I GWGCWC 1 cut(s) 410
Alw26I GTCTC 1 cut(s) 288
AoxI GGCC 3 cut(s) 72, 104, 239
ApaI GGGCCC 1 cut(s) 76
ApeKI GCWGC 1 cut(s) 235
AspA2I CCTAGG 1 cut(s) 107
AspS9I GGNCC 4 cut(s) 72, 73, 111, 154
AsuHPI GGTGA 1 cut(s) 190
AvaII GGWCC 2 cut(s) 111, 154
AvrII CCTAGG 1 cut(s) 107
BaeGI GKGCMC 1 cut(s) 76
BanII GRGCYC 3 cut(s) 76, 391, 410
Bbv12I GWGCWC 1 cut(s) 410
BbvI GCAGC 1 cut(s) 222
BccI CCATC 1 cut(s) 56
BciT130I CCWGG 2 cut(s) 70, 115
BcoDI GTCTC 1 cut(s) 288
BfaI CTAG 2 cut(s) 108, 411
BisI GCNGC 2 cut(s) 236, 239
BlnI CCTAGG 1 cut(s) 107
BlsI GCNGC 2 cut(s) 237, 240
Bme1390I CCNGG 2 cut(s) 70, 115
Bme18I GGWCC 2 cut(s) 111, 154
BmgBI CACGTC 1 cut(s) 193
BmgT120I GGNCC 4 cut(s) 72, 73, 111, 154
BmiI GGNNCC 2 cut(s) 74, 75
BmrFI CCNGG 2 cut(s) 70, 115
BpuEI CTTGAG 1 cut(s) 413
BsaJI CCNNGG 4 cut(s) 69, 107, 124, 207
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse118I RCCGGY 1 cut(s) 166
BseBI CCWGG 2 cut(s) 70, 115
BseDI CCNNGG 4 cut(s) 69, 107, 124, 207
BseGI GGATG 3 cut(s) 48, 203, 267
BseLI CCNNNNNNNGG 1 cut(s) 385
BseRI GAGGAG 2 cut(s) 269, 315
BseSI GKGCMC 1 cut(s) 76
BseX3I CGGCCG 1 cut(s) 239
BseXI GCAGC 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 242
BshFI GGCC 3 cut(s) 74, 106, 241
BsiEI CGRYCG 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 410
BsiSI CCGG 2 cut(s) 167, 242
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 385
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 203
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 3 cut(s) 74, 106, 241
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 3 cut(s) 76, 391, 410
Bsp143I GATC 3 cut(s) 6, 132, 339
BspACI CCGC 7 cut(s) 157, 170, 176, 186, 230, 238, 291
BspANI GGCC 3 cut(s) 74, 106, 241
BspLI GGNNCC 2 cut(s) 74, 75
BsrFI RCCGGY 1 cut(s) 166
BssAI RCCGGY 1 cut(s) 166
BssECI CCNNGG 4 cut(s) 69, 107, 124, 207
BssMI GATC 3 cut(s) 6, 132, 339
BssT1I CCWWGG 1 cut(s) 107
Bst2UI CCWGG 2 cut(s) 70, 115
Bst4CI ACNGT 2 cut(s) 92, 125
Bst6I CTCTTC 1 cut(s) 246
BstC8I GCNNGC 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 3 cut(s) 48, 203, 267
BstKTI GATC 3 cut(s) 9, 135, 342
BstMAI GTCTC 1 cut(s) 288
BstMBI GATC 3 cut(s) 6, 132, 339
BstMCI CGRYCG 1 cut(s) 242
BstMWI GCNNNNNNNGC 3 cut(s) 147, 156, 288
BstNI CCWGG 2 cut(s) 70, 115
BstSCI CCNGG 2 cut(s) 68, 113
BstSLI GKGCMC 1 cut(s) 76
BstV1I GCAGC 1 cut(s) 222
BstX2I RGATCY 1 cut(s) 6
BstYI RGATCY 1 cut(s) 6
BstZI CGGCCG 1 cut(s) 239
BsuRI GGCC 3 cut(s) 74, 106, 241
BtgI CCRYGG 1 cut(s) 124
BtrI CACGTC 1 cut(s) 193
BtsCI GGATG 3 cut(s) 48, 203, 267
Cac8I GCNNGC 1 cut(s) 143
Cfr10I RCCGGY 1 cut(s) 166
Cfr13I GGNCC 4 cut(s) 72, 73, 111, 154
CviAII CATG 1 cut(s) 343
DpnI GATC 3 cut(s) 8, 134, 341
DpnII GATC 3 cut(s) 6, 132, 339
EaeI YGGCCR 1 cut(s) 239
EagI CGGCCG 1 cut(s) 239
Eam1104I CTCTTC 1 cut(s) 246
EarI CTCTTC 1 cut(s) 246
EciI GGCGGA 1 cut(s) 245
Ecl136II GAGCTC 1 cut(s) 408
EclXI CGGCCG 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 107
Eco147I AGGCCT 1 cut(s) 106
Eco24I GRGCYC 3 cut(s) 76, 391, 410
Eco47I GGWCC 2 cut(s) 111, 154
Eco52I CGGCCG 1 cut(s) 239
Eco53kI GAGCTC 1 cut(s) 408
Eco57I CTGAAG 1 cut(s) 121
EcoICRI GAGCTC 1 cut(s) 408
EcoO109I RGGNCCY 3 cut(s) 72, 73, 111
EcoRII CCWGG 2 cut(s) 68, 113
EcoT14I CCWWGG 1 cut(s) 107
EcoT38I GRGCYC 3 cut(s) 76, 391, 410
ErhI CCWWGG 1 cut(s) 107
FaeI CATG 1 cut(s) 346
FaiI YATR 2 cut(s) 344, 381
FaqI GGGAC 1 cut(s) 203
FatI CATG 1 cut(s) 342
FauI CCCGC 1 cut(s) 179
Fnu4HI GCNGC 2 cut(s) 236, 239
FokI GGATG 3 cut(s) 35, 190, 274
FriOI GRGCYC 3 cut(s) 76, 391, 410
Fsp4HI GCNGC 2 cut(s) 236, 239
FspBI CTAG 2 cut(s) 108, 411
GluI GCNGC 2 cut(s) 236, 239
HaeIII GGCC 3 cut(s) 74, 106, 241
HapII CCGG 2 cut(s) 167, 242
Hin1II CATG 1 cut(s) 346
HindIII AAGCTT 1 cut(s) 148
HpaII CCGG 2 cut(s) 167, 242
HphI GGTGA 1 cut(s) 190
Hpy188I TCNGA 1 cut(s) 208
Hpy188III TCNNGA 2 cut(s) 430, 447
HpyAV CCTTC 3 cut(s) 263, 350, 378
HpyCH4III ACNGT 2 cut(s) 92, 125
HpyCH4IV ACGT 2 cut(s) 192, 436
HpyF10VI GCNNNNNNNGC 3 cut(s) 147, 156, 288
HpySE526I ACGT 2 cut(s) 192, 436
Hsp92II CATG 1 cut(s) 346
Kzo9I GATC 3 cut(s) 6, 132, 339
LmnI GCTCC 4 cut(s) 232, 279, 310, 328
LpnPI CCDG 8 cut(s) 55, 82, 100, 127, 155, 180, 255, 407
Lsp1109I GCAGC 1 cut(s) 222
MaeI CTAG 2 cut(s) 108, 411
MaeII ACGT 2 cut(s) 192, 436
MalI GATC 3 cut(s) 8, 134, 341
MboI GATC 3 cut(s) 6, 132, 339
MboII GAAGA 5 cut(s) 127, 257, 260, 263, 362
MflI RGATCY 1 cut(s) 6
MhlI GDGCHC 3 cut(s) 76, 391, 410
MluCI AATT 1 cut(s) 221
MspI CCGG 2 cut(s) 167, 242
MspR9I CCNGG 2 cut(s) 70, 115
Mva1269I GAATGC 1 cut(s) 203
MvaI CCWGG 2 cut(s) 70, 115
MwoI GCNNNNNNNGC 3 cut(s) 147, 156, 288
NdeII GATC 3 cut(s) 6, 132, 339
NlaIII CATG 1 cut(s) 346
NlaIV GGNNCC 2 cut(s) 74, 75
PceI AGGCCT 1 cut(s) 106
PctI GAATGC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 237, 240
PpuMI RGGWCCY 1 cut(s) 111
Psp124BI GAGCTC 1 cut(s) 410
Psp1406I AACGTT 1 cut(s) 436
Psp5II RGGWCCY 1 cut(s) 111
Psp6I CCWGG 2 cut(s) 68, 113
PspGI CCWGG 2 cut(s) 68, 113
PspN4I GGNNCC 2 cut(s) 74, 75
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 4 cut(s) 72, 73, 111, 154
PspPPI RGGWCCY 1 cut(s) 111
PsuI RGATCY 1 cut(s) 6
SacI GAGCTC 1 cut(s) 410
SatI GCNGC 2 cut(s) 236, 239
Sau3AI GATC 3 cut(s) 6, 132, 339
Sau96I GGNCC 4 cut(s) 72, 73, 111, 154
ScrFI CCNGG 2 cut(s) 70, 115
SduI GDGCHC 3 cut(s) 76, 391, 410
SinI GGWCC 2 cut(s) 111, 154
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 1 cut(s) 221
SseBI AGGCCT 1 cut(s) 106
SsiI CCGC 7 cut(s) 157, 170, 176, 186, 230, 238, 291
SspI AATATT 1 cut(s) 396
SspMI CTAG 2 cut(s) 108, 411
SstI GAGCTC 1 cut(s) 410
StuI AGGCCT 1 cut(s) 106
StyD4I CCNGG 2 cut(s) 68, 113
StyI CCWWGG 1 cut(s) 107
TaaI ACNGT 2 cut(s) 92, 125
TaiI ACGT 2 cut(s) 195, 439
TasI AATT 1 cut(s) 221
TauI GCSGC 1 cut(s) 241
TseI GCWGC 1 cut(s) 235
TspDTI ATGAA 1 cut(s) 369
VpaK11BI GGWCC 2 cut(s) 111, 154
XmaJI CCTAGG 1 cut(s) 107
XspI CTAG 2 cut(s) 108, 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.