Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011709.1

Orthogroup ID

OG0013545

Physical Location & Seq

Genomic Coordinates Forward (+)

42276 .. 42767

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011709.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atggaagtttctgtgtgtcacaagaatgcacaatacttgtgcttttctaaccccatatgcaaaaccaaacgcccttcaactctaccatgccaaatcagccctcgtcggaatgtatcgaggaccagttcgggattgagaactccggcatcgagcttaatgcagcaacgagcgcatgaccataggagatcagctgtggtagtaggatgcgcaaacaagggttgttcaacagggatggcaggcgagatagaaagagaactggaggctgagatgcgaccggaagaaggagctgagtggttgggagtaggaaggctgagagacaagtgtggagaaggcagaggaggagccgtggagctgttggagtgtttggaaagggaagcaatcatgggcgaagatgagggcaaagaaccagacgactacaacaggagagctcaaatcttctacaaaagtgcaagagttttccaggctcttagagagagtgctaataatgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.15

Weight (kDa)

7.56

Isoelectric Point (pI)

55.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013545)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05220
fragaria_vesca	FvH4_7g26070
malus_domestica	MD01G1169200.v1.1 MD07G1235100.v1.1
prunus_persica	Prupe.2G265400_v2.0.a1
pyrus_communis	pycom01g18190 pycom07g21260
rosa_chinensis	RchiOBHm_Chr1g0372481
rosa_laevigata	RLG00000026895
rosa_multiflora	Rmu_sc0005410.1_g000002 Rmu_sc0011709.1_g000007
rosa_roxburghii	Rroxscaffold_4G00284890
rosa_rugosa	Rorug01G0372300.1
rosa_samantha	Rh1AG380800 Rh1BG344400 Rh1CG357800 Rh1DG375600
rosa_wichuraiana	Rw1G033500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	78, 225
AjnI	CCWGG	1 cut(s)	459
AluBI	AGCT	5 cut(s)	153, 191, 287, 352, 428
AluI	AGCT	5 cut(s)	153, 191, 287, 352, 428
Alw21I	GWGCWC	1 cut(s)	430
Alw26I	GTCTC	1 cut(s)	309
ApeKI	GCWGC	1 cut(s)	160
AspLEI	GCGC	2 cut(s)	172, 209
AspS9I	GGNCC	1 cut(s)	120
AvaII	GGWCC	1 cut(s)	120
BanII	GRGCYC	1 cut(s)	430
Bbv12I	GWGCWC	1 cut(s)	430
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	1 cut(s)	226
BceAI	ACGGC	1 cut(s)	329
BcgI	CGANNNNNNTGC	2 cut(s)	139, 173
BciT130I	CCWGG	1 cut(s)	461
BcoDI	GTCTC	1 cut(s)	309
BisI	GCNGC	1 cut(s)	161
BlsI	GCNGC	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	461
Bme18I	GGWCC	1 cut(s)	120
BmgT120I	GGNCC	1 cut(s)	120
BmiI	GGNNCC	1 cut(s)	343
BmrFI	CCNGG	1 cut(s)	461
BmsI	GCATC	3 cut(s)	155, 194, 258
BpmI	CTGGAG	1 cut(s)	278
BsaJI	CCNNGG	1 cut(s)	345
BsaWI	WCCGGW	1 cut(s)	274
BsaXI	ACNNNNNCTCC	2 cut(s)	330, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	123, 261
BseBI	CCWGG	1 cut(s)	461
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	2 cut(s)	209, 237
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	3 cut(s)	255, 279, 302
BseNI	ACTGG	2 cut(s)	123, 261
BseRI	GAGGAG	2 cut(s)	351, 354
BseXI	GCAGC	1 cut(s)	172
Bsh1285I	CGRYCG	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	275
BsiHKAI	GWGCWC	1 cut(s)	430
BsiSI	CCGG	2 cut(s)	143, 275
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	1 cut(s)	309
BsmI	GAATGC	1 cut(s)	31
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	1 cut(s)	185
BspCNI	CTCAG	3 cut(s)	256, 280, 303
BspLI	GGNNCC	1 cut(s)	343
BsrI	ACTGG	2 cut(s)	123, 261
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	1 cut(s)	185
Bst2UI	CCWGG	1 cut(s)	461
BstC8I	GCNNGC	1 cut(s)	238
BstDEI	CTNAG	4 cut(s)	264, 288, 311, 467
BstDSI	CCRYGG	1 cut(s)	345
BstF5I	GGATG	2 cut(s)	209, 237
BstHHI	GCGC	2 cut(s)	172, 209
BstKTI	GATC	1 cut(s)	188
BstMAI	GTCTC	1 cut(s)	309
BstMBI	GATC	1 cut(s)	185
BstMCI	CGRYCG	1 cut(s)	275
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 169
BstNI	CCWGG	1 cut(s)	461
BstSCI	CCNGG	1 cut(s)	459
BstV1I	GCAGC	1 cut(s)	172
BtgI	CCRYGG	1 cut(s)	345
BtsCI	GGATG	2 cut(s)	209, 237
Cac8I	GCNNGC	1 cut(s)	238
CfoI	GCGC	2 cut(s)	172, 209
Cfr13I	GGNCC	1 cut(s)	120
CviAII	CATG	3 cut(s)	87, 173, 382
DdeI	CTNAG	4 cut(s)	264, 288, 311, 467
DpnI	GATC	1 cut(s)	187
DpnII	GATC	1 cut(s)	185
Ecl136II	GAGCTC	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	120
Eco53kI	GAGCTC	1 cut(s)	428
EcoICRI	GAGCTC	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	459
EcoT38I	GRGCYC	1 cut(s)	430
FaeI	CATG	3 cut(s)	90, 176, 385
FaiI	YATR	6 cut(s)	56, 58, 88, 174, 180, 383
FatI	CATG	3 cut(s)	86, 172, 381
FauNDI	CATATG	1 cut(s)	56
Fnu4HI	GCNGC	1 cut(s)	161
FokI	GGATG	2 cut(s)	216, 244
FriOI	GRGCYC	1 cut(s)	430
Fsp4HI	GCNGC	1 cut(s)	161
FspI	TGCGCA	1 cut(s)	208
GlaI	GCGC	2 cut(s)	171, 208
GluI	GCNGC	1 cut(s)	161
GsuI	CTGGAG	1 cut(s)	278
HapII	CCGG	2 cut(s)	143, 275
HhaI	GCGC	2 cut(s)	172, 209
Hin1II	CATG	3 cut(s)	90, 176, 385
Hin6I	GCGC	2 cut(s)	170, 207
HinP1I	GCGC	2 cut(s)	170, 207
HpaII	CCGG	2 cut(s)	143, 275
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	1 cut(s)	129
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	4 cut(s)	84, 275, 300, 323
HpyCH4V	TGCA	4 cut(s)	29, 60, 160, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 169
HpyF3I	CTNAG	4 cut(s)	264, 288, 311, 467
Hsp92II	CATG	3 cut(s)	90, 176, 385
HspAI	GCGC	2 cut(s)	170, 207
Kzo9I	GATC	1 cut(s)	185
LmnI	GCTCC	3 cut(s)	284, 341, 349
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	3 cut(s)	155, 194, 258
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	1 cut(s)	187
MboI	GATC	1 cut(s)	185
MboII	GAAGA	3 cut(s)	290, 401, 427
MhlI	GDGCHC	1 cut(s)	430
MmeI	TCCRAC	2 cut(s)	86, 336
MnlI	CCTC	6 cut(s)	111, 111, 253, 329, 332, 388
MseI	TTAA	1 cut(s)	155
MslI	CAYNNNNRTG	1 cut(s)	24
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	2 cut(s)	143, 275
MspR9I	CCNGG	1 cut(s)	461
Mva1269I	GAATGC	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	461
MwoI	GCNNNNNNNGC	2 cut(s)	96, 169
NdeI	CATATG	1 cut(s)	56
NdeII	GATC	1 cut(s)	185
NlaIII	CATG	3 cut(s)	90, 176, 385
NlaIV	GGNNCC	1 cut(s)	343
NmuCI	GTSAC	1 cut(s)	17
NsbI	TGCGCA	1 cut(s)	208
PctI	GAATGC	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	162
Psp124BI	GAGCTC	1 cut(s)	430
Psp6I	CCWGG	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	459
PspN4I	GGNNCC	1 cut(s)	343
PspPI	GGNCC	1 cut(s)	120
PvuII	CAGCTG	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	24
SacI	GAGCTC	1 cut(s)	430
SaqAI	TTAA	1 cut(s)	155
SatI	GCNGC	1 cut(s)	161
Sau3AI	GATC	1 cut(s)	185
Sau96I	GGNCC	1 cut(s)	120
ScrFI	CCNGG	1 cut(s)	461
SduI	GDGCHC	1 cut(s)	430
SetI	ASST	5 cut(s)	155, 193, 289, 354, 430
SfaNI	GCATC	3 cut(s)	155, 194, 258
SinI	GGWCC	1 cut(s)	120
SmiMI	CAYNNNNRTG	1 cut(s)	24
SstI	GAGCTC	1 cut(s)	430
StyD4I	CCNGG	1 cut(s)	459
TaqI	TCGA	2 cut(s)	116, 149
Tru1I	TTAA	1 cut(s)	155
Tru9I	TTAA	1 cut(s)	155
TseFI	GTSAC	1 cut(s)	17
TseI	GCWGC	1 cut(s)	160
Tsp45I	GTSAC	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.