FvH4_7g26070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013545
Physical Location & Seq
Reverse (-)
19797972 .. 19798627
656 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g26070.t1

Sequence Viewer

Length: 480 bp
ATGGAGTTTTCTGTGTCTCACAAGAATGCAAACTACTTGTGCTCTTCTAACCCCACACGCAAAACCAAACAATCTTCAAGCCTACCATGCCAAATCCGCAGCCCTCGCCGGAATGTATCGAGTACCAGGTGGGGATTGAGAACTCCGGCATCGAGCTTAGCGCAGCAAGGAGGATCAGCTGTGGTAGTAGGATGTGCAAACAAGGGTTGTTCAACGGAGCTAGGGACCGACATAGAAAGAGAACTGGAGGCCGAGATGCGGCCAGAGGAAGGAGCAGACTGGATGGGAGTAGGAAAGCTGAGGGACAAGTGTGGAGAAGGCAGAGGAGGAGCAGTGGAGCTGTTGGAGTGTTTGGAAAGGGAAGCAATCATGGGTGAAGATGAAGGCAAAGACCCTAACGATTACAACAGGAGGGCCCAAATCTTCTATAAGAGTTCCAGAGTTTTCCAGGCTCTTAAAGAGAGTACTAGTAATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

160

Amino Acids

17.5

Weight (kDa)

6.62

Isoelectric Point (pI)

58.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013545)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05220
fragaria_vesca FvH4_7g26070
malus_domestica MD01G1169200.v1.1 MD07G1235100.v1.1
prunus_persica Prupe.2G265400_v2.0.a1
pyrus_communis pycom01g18190 pycom07g21260
rosa_chinensis RchiOBHm_Chr1g0372481
rosa_laevigata RLG00000026895
rosa_multiflora Rmu_sc0005410.1_g000002 Rmu_sc0011709.1_g000007
rosa_roxburghii Rroxscaffold_4G00284890
rosa_rugosa Rorug01G0372300.1
rosa_samantha Rh1AG380800 Rh1BG344400 Rh1CG357800 Rh1DG375600
rosa_wichuraiana Rw1G033500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 97, 259
AclWI GGATC 1 cut(s) 181
AcoI YGGCCR 1 cut(s) 260
AfaI GTAC 2 cut(s) 124, 466
AfiI CCNNNNNNNGG 2 cut(s) 258, 269
AgsI TTSAA 2 cut(s) 78, 213
AhlI ACTAGT 1 cut(s) 467
AjnI CCWGG 2 cut(s) 125, 447
AluBI AGCT 5 cut(s) 156, 179, 220, 298, 340
AluI AGCT 5 cut(s) 156, 179, 220, 298, 340
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 1 cut(s) 21
AlwI GGATC 1 cut(s) 181
AoxI GGCC 3 cut(s) 249, 260, 414
ApaI GGGCCC 1 cut(s) 418
ApeKI GCWGC 2 cut(s) 99, 163
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 3 cut(s) 225, 414, 415
AsuHPI GGTGA 1 cut(s) 386
AvaII GGWCC 1 cut(s) 225
BaeGI GKGCMC 1 cut(s) 418
BanII GRGCYC 1 cut(s) 418
Bbv12I GWGCWC 1 cut(s) 44
BbvCI CCTCAGC 1 cut(s) 299
BbvI GCAGC 2 cut(s) 111, 175
BccI CCATC 1 cut(s) 277
BciT130I CCWGG 2 cut(s) 127, 449
BcoDI GTCTC 1 cut(s) 21
BcuI ACTAGT 1 cut(s) 467
BfaI CTAG 2 cut(s) 221, 468
BisI GCNGC 3 cut(s) 100, 164, 260
BlpI GCTNAGC 1 cut(s) 157
BlsI GCNGC 3 cut(s) 101, 165, 261
BmcAI AGTACT 1 cut(s) 466
Bme1390I CCNGG 2 cut(s) 127, 449
Bme18I GGWCC 1 cut(s) 225
BmgT120I GGNCC 3 cut(s) 225, 414, 415
BmiI GGNNCC 2 cut(s) 226, 416
BmrFI CCNGG 2 cut(s) 127, 449
BmsI GCATC 2 cut(s) 158, 246
BpmI CTGGAG 1 cut(s) 266
Bpu10I CCTNAGC 1 cut(s) 299
Bpu1102I GCTNAGC 1 cut(s) 157
BsaXI ACNNNNNCTCC 2 cut(s) 318, 348
Bsc4I CCNNNNNNNGG 2 cut(s) 258, 269
Bse1I ACTGG 2 cut(s) 249, 284
BseBI CCWGG 2 cut(s) 127, 449
BseGI GGATG 2 cut(s) 197, 288
BseLI CCNNNNNNNGG 2 cut(s) 258, 269
BseMII CTCAG 1 cut(s) 290
BseNI ACTGG 2 cut(s) 249, 284
BseRI GAGGAG 2 cut(s) 339, 342
BseSI GKGCMC 1 cut(s) 418
BseXI GCAGC 2 cut(s) 111, 175
BshFI GGCC 3 cut(s) 251, 262, 416
BsiHKAI GWGCWC 1 cut(s) 44
BsiSI CCGG 2 cut(s) 109, 146
BslFI GGGAC 2 cut(s) 238, 317
BslI CCNNNNNNNGG 2 cut(s) 258, 269
BsmAI GTCTC 1 cut(s) 21
BsmFI GGGAC 2 cut(s) 238, 317
BsmI GAATGC 1 cut(s) 31
BsnI GGCC 3 cut(s) 251, 262, 416
Bsp120I GGGCCC 1 cut(s) 414
Bsp1286I GDGCHC 2 cut(s) 44, 418
Bsp143I GATC 1 cut(s) 173
Bsp1720I GCTNAGC 1 cut(s) 157
BspACI CCGC 2 cut(s) 97, 259
BspANI GGCC 3 cut(s) 251, 262, 416
BspCNI CTCAG 1 cut(s) 291
BspLI GGNNCC 2 cut(s) 226, 416
BspPI GGATC 1 cut(s) 181
BspQI GCTCTTC 1 cut(s) 49
BsrI ACTGG 2 cut(s) 249, 284
BssMI GATC 1 cut(s) 173
Bst2UI CCWGG 2 cut(s) 127, 449
Bst6I CTCTTC 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 157, 299
BstF5I GGATG 2 cut(s) 197, 288
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 1 cut(s) 176
BstMAI GTCTC 1 cut(s) 21
BstMBI GATC 1 cut(s) 173
BstMWI GCNNNNNNNGC 3 cut(s) 87, 96, 105
BstNI CCWGG 2 cut(s) 127, 449
BstSCI CCNGG 2 cut(s) 125, 447
BstSLI GKGCMC 1 cut(s) 418
BstV1I GCAGC 2 cut(s) 111, 175
BsuRI GGCC 3 cut(s) 251, 262, 416
BtsCI GGATG 2 cut(s) 197, 288
BtsI GCAGTG 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 339
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 3 cut(s) 225, 414, 415
CsiI ACCWGGT 1 cut(s) 125
Csp6I GTAC 2 cut(s) 123, 465
CviAII CATG 2 cut(s) 87, 370
CviQI GTAC 2 cut(s) 123, 465
DdeI CTNAG 2 cut(s) 157, 299
DpnI GATC 1 cut(s) 175
DpnII GATC 1 cut(s) 173
EaeI YGGCCR 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 418
Eco47I GGWCC 1 cut(s) 225
EcoO109I RGGNCCY 1 cut(s) 414
EcoRII CCWGG 2 cut(s) 125, 447
EcoT38I GRGCYC 1 cut(s) 418
FaeI CATG 2 cut(s) 90, 373
FaiI YATR 4 cut(s) 88, 233, 371, 429
FaqI GGGAC 2 cut(s) 238, 317
FatI CATG 2 cut(s) 86, 369
Fnu4HI GCNGC 3 cut(s) 100, 164, 260
FokI GGATG 2 cut(s) 204, 295
FriOI GRGCYC 1 cut(s) 418
Fsp4HI GCNGC 3 cut(s) 100, 164, 260
FspBI CTAG 2 cut(s) 221, 468
GlaI GCGC 1 cut(s) 162
GluI GCNGC 3 cut(s) 100, 164, 260
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 3 cut(s) 251, 262, 416
HapII CCGG 2 cut(s) 109, 146
HhaI GCGC 1 cut(s) 163
Hin1II CATG 2 cut(s) 90, 373
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HpaII CCGG 2 cut(s) 109, 146
HphI GGTGA 1 cut(s) 386
Hpy188III TCNNGA 1 cut(s) 438
HpyAV CCTTC 3 cut(s) 263, 311, 377
HpyCH4V TGCA 2 cut(s) 29, 197
HpyF10VI GCNNNNNNNGC 3 cut(s) 87, 96, 105
HpyF3I CTNAG 2 cut(s) 157, 299
Hsp92II CATG 2 cut(s) 90, 373
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 1 cut(s) 173
LguI GCTCTTC 1 cut(s) 49
LmnI GCTCC 4 cut(s) 217, 272, 329, 337
Lsp1109I GCAGC 2 cut(s) 111, 175
LweI GCATC 2 cut(s) 158, 246
MabI ACCWGGT 1 cut(s) 125
MaeI CTAG 2 cut(s) 221, 468
MalI GATC 1 cut(s) 175
MboI GATC 1 cut(s) 173
MboII GAAGA 4 cut(s) 36, 66, 389, 415
MhlI GDGCHC 2 cut(s) 44, 418
MmeI TCCRAC 1 cut(s) 324
MnlI CCTC 8 cut(s) 114, 164, 241, 259, 294, 317, 320, 405
MseI TTAA 1 cut(s) 456
MslI CAYNNNNRTG 1 cut(s) 24
MspA1I CMGCKG 1 cut(s) 179
MspI CCGG 2 cut(s) 109, 146
MspR9I CCNGG 2 cut(s) 127, 449
Mva1269I GAATGC 1 cut(s) 31
MvaI CCWGG 2 cut(s) 127, 449
MwoI GCNNNNNNNGC 3 cut(s) 87, 96, 105
NdeII GATC 1 cut(s) 173
NlaIII CATG 2 cut(s) 90, 373
NlaIV GGNNCC 2 cut(s) 226, 416
NmeAIII GCCGAG 1 cut(s) 277
PciSI GCTCTTC 1 cut(s) 49
PctI GAATGC 1 cut(s) 31
PkrI GCNGC 3 cut(s) 101, 165, 261
Psp6I CCWGG 2 cut(s) 125, 447
PspGI CCWGG 2 cut(s) 125, 447
PspN4I GGNNCC 2 cut(s) 226, 416
PspOMI GGGCCC 1 cut(s) 414
PspPI GGNCC 3 cut(s) 225, 414, 415
PvuII CAGCTG 1 cut(s) 179
RsaI GTAC 2 cut(s) 124, 466
RsaNI GTAC 2 cut(s) 123, 465
RseI CAYNNNNRTG 1 cut(s) 24
SapI GCTCTTC 1 cut(s) 49
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 3 cut(s) 100, 164, 260
Sau3AI GATC 1 cut(s) 173
Sau96I GGNCC 3 cut(s) 225, 414, 415
ScaI AGTACT 1 cut(s) 466
ScrFI CCNGG 2 cut(s) 127, 449
SduI GDGCHC 2 cut(s) 44, 418
SetI ASST 6 cut(s) 131, 158, 181, 222, 300, 342
SexAI ACCWGGT 1 cut(s) 125
SfaNI GCATC 2 cut(s) 158, 246
SinI GGWCC 1 cut(s) 225
SmiMI CAYNNNNRTG 1 cut(s) 24
SpeI ACTAGT 1 cut(s) 467
SsiI CCGC 2 cut(s) 97, 259
SspMI CTAG 2 cut(s) 221, 468
StyD4I CCNGG 2 cut(s) 125, 447
TaqI TCGA 2 cut(s) 119, 152
TaqII GACCGA 1 cut(s) 242
TatI WGTACW 1 cut(s) 464
TauI GCSGC 1 cut(s) 262
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 1 cut(s) 339
TseI GCWGC 2 cut(s) 99, 163
TspDTI ATGAA 1 cut(s) 396
TspGWI ACGGA 1 cut(s) 230
TspRI CASTG 1 cut(s) 339
VpaK11BI GGWCC 1 cut(s) 225
XspI CTAG 2 cut(s) 221, 468
ZrmI AGTACT 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.