Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0010173

Physical Location & Seq

Genomic Coordinates Forward (+)

1672070 .. 1674770

Gene Structure 2701 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGAACAAGAACAAGATTGATGTTAAGATCGAGACGAAGAAAGGATCGATGGATGAGTGGCCTGAGCCAATCGTCCGAGTCCAGTCCTTAGCCGAGAGCAACCTCTCCTCTCTCCCCGACCGTTACATCAAACCAGCGTCTCTACGCCCCACCACGACCGAAGACGCTCCTACCGCGACCAACATCCCAATCATAGACCTTGAAGGACTCTTCTCGGAAGAAGGGTTGTCTGATGACGTCATCATGGCTCGGATATCGGAGGCTTGCCGTGGGTGGGGGTTCTTCCAGGTGGTGAACCACGGGGTCAAACCGGAGCTGATGGACGCGGCTAGGGAGAATTGGAGAGAGTTTTTCCATATGCCGGTTAATGCCAAAGAGACTTACTCAAACTCACCAAGAACCTACGAAGGCTATGGAAGTAGACTAGGTGTTGAGAAAGGAGCAAGTCTTGATTGGAGTGATTATTACTTTCTCCATCTTCTTCCTCATCATTTGAAAGACTTCAACAAGTGGCCTTCTTTTCCTCCCACCATAAGAGAAGTGATCGATGAATACGGCGAAGAGCTAGTGAAGCTAAGTGGGAGAATTATGAGGGTATTATCGACAAACTTGGGACTAAAAGAGGATAAGTTTCAAGAAGCATTTGGAGGTGAAAACATTGGGGCGTGTTTGAGGGTTAATTATTACCCAAAATGCCCTCGACCGGAGCTGGCTCTTGGTCTCTCTCCACACTCCGATCCTGGCGGTATGACCATTCTCTTACCGGACGATCAAGTCTTCGGTCTCCAGGTTCGTAAAGATGACACGTGGATCACCGTCAAGCCTCATCCCCATGCTTTCATCGTCAATATTGGTGATCAAATACAGATACTAAGCAACTCAACATACAAGAGTGTGGAGCATAGAGTGATAGTGAACTCGGACAAGGAGAGAGTTTCACTTGCCTTCTTCTACAATCCTAAAAGCGATATTCCGATCCAACCATTACAAGAACTTGTATCAACTCATAATCCTCCTTTATACCCTCCCATGACCTTTGATCAGTATAGACTCTTTATCAGAACTCAAGGTCCACAAGGCAAATCCCATGTTGAATCTCATATTTCTCCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009628 GO:0009636 GO:0009966 GO:0009987 GO:0010646 GO:0016787 GO:0016810 GO:0023051 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0080167 GO:0097237 GO:0120091 GO:2000022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

371

Amino Acids

42.18

Weight (kDa)

5.87

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	62 - 173	1.9e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	222 - 290	4.1e-22	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05600 AT5G05600
fragaria_vesca	FvH4_7g24550 FvH4_7g24550 FvH4_7g24550
malus_domestica	MD01G1153600.v1.1 MD07G1222600.v1.1
prunus_persica	Prupe.2G250900_v2.0.a1
pyrus_communis	pycom01g17120 pycom07g20130
rosa_chinensis	RchiOBHm_Chr1g0370391
rosa_laevigata	RLG00000027052
rosa_multiflora	Rmu_sc0005656.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286630
rosa_rugosa	Rorug01G0356100
rosa_samantha	Rh1AG364400 Rh1BG327700 Rh1CG340700 Rh1DG358000
rosa_wichuraiana	Rw1G032070 Rw1G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	773
AatII	GACGTC	1 cut(s)	240
AccI	GTMKAC	1 cut(s)	421
AccII	CGCG	2 cut(s)	176, 326
AciI	CCGC	3 cut(s)	174, 326, 744
AclWI	GGATC	4 cut(s)	52, 731, 818, 970
AcvI	CACGTG	1 cut(s)	807
AcyI	GRCGYC	1 cut(s)	237
AfiI	CCNNNNNNNGG	3 cut(s)	274, 361, 703
AflIII	ACRYGT	1 cut(s)	804
AgsI	TTSAA	5 cut(s)	203, 496, 505, 635, 1094
AjnI	CCWGG	3 cut(s)	285, 739, 786
AloI	GAACNNNNNNTCC	2 cut(s)	1054, 1086
AluBI	AGCT	4 cut(s)	316, 565, 574, 709
AluI	AGCT	4 cut(s)	316, 565, 574, 709
Alw26I	GTCTC	5 cut(s)	26, 144, 371, 725, 788
AlwI	GGATC	4 cut(s)	52, 731, 818, 970
AoxI	GGCC	2 cut(s)	59, 512
Asp700I	GAANNNNTTC	1 cut(s)	500
AspS9I	GGNCC	1 cut(s)	1070
AsuHPI	GGTGA	5 cut(s)	304, 384, 662, 805, 866
AvaII	GGWCC	1 cut(s)	1070
BbrPI	CACGTG	1 cut(s)	807
BbsI	GAAGAC	2 cut(s)	168, 769
BccI	CCATC	3 cut(s)	43, 313, 483
BceAI	ACGGC	2 cut(s)	252, 571
BciT130I	CCWGG	3 cut(s)	287, 741, 788
BclI	TGATCA	2 cut(s)	856, 1039
BcoDI	GTCTC	5 cut(s)	26, 144, 371, 725, 788
BfaI	CTAG	3 cut(s)	330, 425, 566
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	3 cut(s)	287, 741, 788
Bme18I	GGWCC	1 cut(s)	1070
BmgT120I	GGNCC	1 cut(s)	1070
BmrFI	CCNGG	3 cut(s)	287, 741, 788
BpiI	GAAGAC	2 cut(s)	168, 769
BplI	GAGNNNNNCTC	2 cut(s)	368, 400
BpmI	CTGGAG	1 cut(s)	770
Bpu10I	CCTNAGC	2 cut(s)	63, 88
BpuEI	CTTGAG	1 cut(s)	1050
Bsa29I	ATCGAT	2 cut(s)	47, 546
BsaAI	YACGTR	1 cut(s)	807
BsaHI	GRCGYC	1 cut(s)	237
BsaI	GGTCTC	2 cut(s)	725, 788
BsaJI	CCNNGG	2 cut(s)	268, 298
BsaWI	WCCGGW	3 cut(s)	310, 703, 763
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 361, 703
Bse118I	RCCGGY	1 cut(s)	361
Bse1I	ACTGG	1 cut(s)	82
BseBI	CCWGG	3 cut(s)	287, 741, 788
BseCI	ATCGAT	2 cut(s)	47, 546
BseDI	CCNNGG	2 cut(s)	268, 298
BseGI	GGATG	3 cut(s)	58, 183, 826
BseLI	CCNNNNNNNGG	3 cut(s)	274, 361, 703
BseMII	CTCAG	1 cut(s)	54
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	2 cut(s)	97, 1098
Bsh1236I	CGCG	2 cut(s)	176, 326
Bsh1285I	CGRYCG	3 cut(s)	121, 159, 704
BshFI	GGCC	2 cut(s)	61, 514
BshVI	ATCGAT	2 cut(s)	47, 546
BsiEI	CGRYCG	3 cut(s)	121, 159, 704
BsiSI	CCGG	4 cut(s)	311, 362, 704, 764
BslFI	GGGAC	1 cut(s)	627
BslI	CCNNNNNNNGG	3 cut(s)	274, 361, 703
BsmAI	GTCTC	5 cut(s)	26, 144, 371, 725, 788
BsmBI	CGTCTC	2 cut(s)	26, 144
BsmFI	GGGAC	1 cut(s)	627
BsnI	GGCC	2 cut(s)	61, 514
Bso31I	GGTCTC	2 cut(s)	725, 788
Bsp143I	GATC	9 cut(s)	27, 44, 543, 736, 769, 810, 856, 975, 1039
BspACI	CCGC	3 cut(s)	174, 326, 744
BspANI	GGCC	2 cut(s)	61, 514
BspCNI	CTCAG	1 cut(s)	55
BspDI	ATCGAT	2 cut(s)	47, 546
BspFNI	CGCG	2 cut(s)	176, 326
BspPI	GGATC	4 cut(s)	52, 731, 818, 970
BspQI	GCTCTTC	1 cut(s)	555
BspTNI	GGTCTC	2 cut(s)	725, 788
BsrFI	RCCGGY	1 cut(s)	361
BsrI	ACTGG	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	361
BssECI	CCNNGG	2 cut(s)	268, 298
BssMI	GATC	9 cut(s)	27, 44, 543, 736, 769, 810, 856, 975, 1039
BssNI	GRCGYC	1 cut(s)	237
Bst2UI	CCWGG	3 cut(s)	287, 741, 788
Bst4CI	ACNGT	2 cut(s)	122, 817
Bst6I	CTCTTC	2 cut(s)	215, 555
BstACI	GRCGYC	1 cut(s)	237
BstBAI	YACGTR	1 cut(s)	807
BstC8I	GCNNGC	2 cut(s)	265, 711
BstDEI	CTNAG	4 cut(s)	63, 88, 575, 872
BstDSI	CCRYGG	2 cut(s)	268, 298
BstF5I	GGATG	3 cut(s)	58, 183, 826
BstFNI	CGCG	2 cut(s)	176, 326
BstKTI	GATC	9 cut(s)	30, 47, 546, 739, 772, 813, 859, 978, 1042
BstMAI	GTCTC	5 cut(s)	26, 144, 371, 725, 788
BstMBI	GATC	9 cut(s)	27, 44, 543, 736, 769, 810, 856, 975, 1039
BstMCI	CGRYCG	3 cut(s)	121, 159, 704
BstMWI	GCNNNNNNNGC	2 cut(s)	173, 571
BstNI	CCWGG	3 cut(s)	287, 741, 788
BstSCI	CCNGG	3 cut(s)	285, 739, 786
BstUI	CGCG	2 cut(s)	176, 326
BstV2I	GAAGAC	2 cut(s)	168, 769
Bsu15I	ATCGAT	2 cut(s)	47, 546
BsuRI	GGCC	2 cut(s)	61, 514
BsuTUI	ATCGAT	2 cut(s)	47, 546
BtgI	CCRYGG	2 cut(s)	268, 298
BtsCI	GGATG	3 cut(s)	58, 183, 826
Cac8I	GCNNGC	2 cut(s)	265, 711
Cfr10I	RCCGGY	1 cut(s)	361
Cfr13I	GGNCC	1 cut(s)	1070
ClaI	ATCGAT	2 cut(s)	47, 546
CseI	GACGC	3 cut(s)	126, 173, 332
CviAII	CATG	4 cut(s)	244, 833, 1030, 1088
DdeI	CTNAG	4 cut(s)	63, 88, 575, 872
DpnI	GATC	9 cut(s)	29, 46, 545, 738, 771, 812, 858, 977, 1041
DpnII	GATC	9 cut(s)	27, 44, 543, 736, 769, 810, 856, 975, 1039
DrdI	GACNNNNNNGTC	1 cut(s)	773
DseDI	GACNNNNNNGTC	1 cut(s)	773
Eam1104I	CTCTTC	2 cut(s)	215, 555
EarI	CTCTTC	2 cut(s)	215, 555
Eco31I	GGTCTC	2 cut(s)	725, 788
Eco32I	GATATC	1 cut(s)	255
Eco47I	GGWCC	1 cut(s)	1070
Eco72I	CACGTG	1 cut(s)	807
EcoRII	CCWGG	3 cut(s)	285, 739, 786
EcoRV	GATATC	1 cut(s)	255
Esp3I	CGTCTC	2 cut(s)	26, 144
FaeI	CATG	4 cut(s)	247, 836, 1033, 1091
FaqI	GGGAC	1 cut(s)	627
FatI	CATG	4 cut(s)	243, 832, 1029, 1087
FauNDI	CATATG	1 cut(s)	357
FbaI	TGATCA	2 cut(s)	856, 1039
FblI	GTMKAC	1 cut(s)	421
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	3 cut(s)	65, 170, 813
Fsp4HI	GCNGC	1 cut(s)	327
FspBI	CTAG	3 cut(s)	330, 425, 566
GluI	GCNGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	770
HaeIII	GGCC	2 cut(s)	61, 514
HapII	CCGG	4 cut(s)	311, 362, 704, 764
HgaI	GACGC	3 cut(s)	126, 173, 332
Hin1I	GRCGYC	1 cut(s)	237
Hin1II	CATG	4 cut(s)	247, 836, 1033, 1091
HinfI	GANTC	4 cut(s)	78, 207, 1050, 1094
HpaII	CCGG	4 cut(s)	311, 362, 704, 764
HphI	GGTGA	5 cut(s)	304, 384, 662, 805, 866
Hpy166II	GTNNAC	4 cut(s)	295, 422, 916, 1073
Hpy188I	TCNGA	9 cut(s)	77, 217, 232, 252, 259, 736, 922, 975, 1061
Hpy188III	TCNNGA	3 cut(s)	31, 449, 635
Hpy8I	GTNNAC	4 cut(s)	295, 422, 916, 1073
HpyAV	CCTTC	5 cut(s)	197, 215, 401, 525, 955
HpyCH4III	ACNGT	2 cut(s)	122, 817
HpyCH4IV	ACGT	2 cut(s)	237, 806
HpyF10VI	GCNNNNNNNGC	2 cut(s)	173, 571
HpyF3I	CTNAG	4 cut(s)	63, 88, 575, 872
HpySE526I	ACGT	2 cut(s)	237, 806
Hsp92I	GRCGYC	1 cut(s)	237
Hsp92II	CATG	4 cut(s)	247, 836, 1033, 1091
Ksp22I	TGATCA	2 cut(s)	856, 1039
Kzo9I	GATC	9 cut(s)	27, 44, 543, 736, 769, 810, 856, 975, 1039
LguI	GCTCTTC	1 cut(s)	555
LmnI	GCTCC	5 cut(s)	172, 313, 440, 706, 898
MaeI	CTAG	3 cut(s)	330, 425, 566
MaeII	ACGT	2 cut(s)	237, 806
MaeIII	GTNAC	1 cut(s)	122
MalI	GATC	9 cut(s)	29, 46, 545, 738, 771, 812, 858, 977, 1041
MboI	GATC	9 cut(s)	27, 44, 543, 736, 769, 810, 856, 975, 1039
MluCI	AATT	3 cut(s)	337, 585, 679
MlyI	GAGTC	3 cut(s)	87, 201, 1044
MmeI	TCCRAC	1 cut(s)	1003
MroXI	GAANNNNTTC	1 cut(s)	500
MseI	TTAA	3 cut(s)	24, 366, 678
MslI	CAYNNNNRTG	1 cut(s)	831
MspI	CCGG	4 cut(s)	311, 362, 704, 764
MspR9I	CCNGG	3 cut(s)	287, 741, 788
MvaI	CCWGG	3 cut(s)	287, 741, 788
MvnI	CGCG	2 cut(s)	176, 326
MwoI	GCNNNNNNNGC	2 cut(s)	173, 571
NdeI	CATATG	1 cut(s)	357
NdeII	GATC	9 cut(s)	27, 44, 543, 736, 769, 810, 856, 975, 1039
NlaIII	CATG	4 cut(s)	247, 836, 1033, 1091
NmeAIII	GCCGAG	1 cut(s)	118
PciSI	GCTCTTC	1 cut(s)	555
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	1 cut(s)	1094
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	3 cut(s)	86, 201, 1044
PmaCI	CACGTG	1 cut(s)	807
PmlI	CACGTG	1 cut(s)	807
PpsI	GAGTC	3 cut(s)	86, 201, 1044
Ppu21I	YACGTR	1 cut(s)	807
Psp6I	CCWGG	3 cut(s)	285, 739, 786
PspCI	CACGTG	1 cut(s)	807
PspGI	CCWGG	3 cut(s)	285, 739, 786
PspPI	GGNCC	1 cut(s)	1070
RseI	CAYNNNNRTG	1 cut(s)	831
SapI	GCTCTTC	1 cut(s)	555
SaqAI	TTAA	3 cut(s)	24, 366, 678
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	9 cut(s)	27, 44, 543, 736, 769, 810, 856, 975, 1039
Sau96I	GGNCC	1 cut(s)	1070
SchI	GAGTC	3 cut(s)	87, 201, 1044
ScrFI	CCNGG	3 cut(s)	287, 741, 788
SinI	GGWCC	1 cut(s)	1070
SmiMI	CAYNNNNRTG	1 cut(s)	831
SmlI	CTYRAG	1 cut(s)	1065
SmoI	CTYRAG	1 cut(s)	1065
Sse9I	AATT	3 cut(s)	337, 585, 679
SsiI	CCGC	3 cut(s)	174, 326, 744
SspI	AATATT	1 cut(s)	850
SspMI	CTAG	3 cut(s)	330, 425, 566
StyD4I	CCNGG	3 cut(s)	285, 739, 786
TaaI	ACNGT	2 cut(s)	122, 817
TaiI	ACGT	2 cut(s)	240, 809
TaqI	TCGA	5 cut(s)	30, 47, 546, 602, 700
TaqII	GACCGA	2 cut(s)	173, 770
TasI	AATT	3 cut(s)	337, 585, 679
TauI	GCSGC	1 cut(s)	329
TfiI	GAWTC	1 cut(s)	1094
Tru1I	TTAA	3 cut(s)	24, 366, 678
Tru9I	TTAA	3 cut(s)	24, 366, 678
TspDTI	ATGAA	3 cut(s)	17, 564, 829
VpaK11BI	GGWCC	1 cut(s)	1070
XmiI	GTMKAC	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	500
XspI	CTAG	3 cut(s)	330, 425, 566
ZraI	GACGTC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.