Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0010173

Physical Location & Seq

Genomic Coordinates Reverse (-)

58199558 .. 58202755

Gene Structure 3198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG358000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGAATTGCCCACAGGATTGGCCCGAGCCTATTGTCCGAGTACAGTCCCTGTCAGAAAACGGCGTCGTACCCGATCGGTACATCAAACCACTGACGGAAAGACCAAGCTCCGATCACCCCACCCACGCCAACATCCCCATCATCGACTTCCAACCCTTGCTATCATCAGATAACGGCGACGATGGTCTCCGTGCCGCCACACTTGCTAAAATCTCAGAGGCTTGCCGGGAGTGGGGCTTCTTTCAGATAGTGAACCACGGCGTCAGTCCGGAACTGTTGGACCAGACGCAGAAGGTTTGGCGGGAGTTTTTCCATTTGCCGATGGAGATGAAACAGGCCTATGCCAACTCGCCCAAGACTTATGAAGGGTATGGGAGCAGGCTTGGAGTTGAGAAAGGCGCCATTCTTGATTGGAGTGACTACTATTTCCTTCACTTTCTTCCGTTTTGTTTGAAGGACTACAACAAGTGGCCTTCCATCCCGGACGGCAGGGAAGTGATAGATGAGTATGGGAGGGAAGTAGTGAAGCTGTGCGGGAGATTAATGAAGGCTTTATCACTAAACCTTGGATTAGAGGAAGATTTTCTTCAAAACAAATTTGGAGGGCGAGACATTGGGGCTTGTCTAAGAGTGAATTTCTACCCAAAATGTCCTCAGCCAGACCTCACTCTTGGTCTCTCATCACACTCGGACCCAGGAGGCATGACCTTGCTACTATGTGATGAACATGTCGCCGGTCTTCAAGTCCGAAAAGATAACAGTTGGATCACTGTGAAACCAGCTCCCCATGCTTTTATCGTCAATATCGGAGATCAAATTCAGGTGAATTTTCATTCTTGGTTTTATTTGTATTTTTTTTTTCTGGAAAAAAAATTTGGACAATTTCTCGATTCATTTTGTTTATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009628 GO:0009636 GO:0009966 GO:0009987 GO:0010646 GO:0016787 GO:0016810 GO:0023051 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0080167 GO:0097237 GO:0120091 GO:2000022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

302

Amino Acids

34.53

Weight (kDa)

5.48

Isoelectric Point (pI)

40.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	45 - 159	1.4e-32	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	207 - 275	2.1e-20	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05600 AT5G05600
fragaria_vesca	FvH4_7g24550 FvH4_7g24550 FvH4_7g24550
malus_domestica	MD01G1153600.v1.1 MD07G1222600.v1.1
prunus_persica	Prupe.2G250900_v2.0.a1
pyrus_communis	pycom01g17120 pycom07g20130
rosa_chinensis	RchiOBHm_Chr1g0370391
rosa_laevigata	RLG00000027052
rosa_multiflora	Rmu_sc0005656.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286630
rosa_rugosa	Rorug01G0356100
rosa_samantha	Rh1AG364400 Rh1BG327700 Rh1CG340700 Rh1DG358000
rosa_wichuraiana	Rw1G032070 Rw1G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	398
AccIII	TCCGGA	1 cut(s)	268
AciI	CCGC	3 cut(s)	195, 301, 534
AclWI	GGATC	1 cut(s)	773
AcsI	RAATTY	5 cut(s)	596, 634, 816, 826, 872
AcyI	GRCGYC	3 cut(s)	63, 261, 399
AfaI	GTAC	3 cut(s)	42, 69, 80
AfiI	CCNNNNNNNGG	1 cut(s)	232
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	3 cut(s)	454, 590, 743
AjnI	CCWGG	1 cut(s)	694
AjuI	GAANNNNNNNTTGG	2 cut(s)	858, 890
AluBI	AGCT	3 cut(s)	108, 529, 782
AluI	AGCT	3 cut(s)	108, 529, 782
Alw26I	GTCTC	3 cut(s)	191, 603, 680
AlwI	GGATC	1 cut(s)	773
AlwNI	CAGNNNCTG	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	23
Aor13HI	TCCGGA	1 cut(s)	268
AoxI	GGCC	3 cut(s)	20, 336, 470
ApoI	RAATTY	5 cut(s)	596, 634, 816, 826, 872
AseI	ATTAAT	1 cut(s)	542
Asp700I	GAANNNNTTC	1 cut(s)	582
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	3 cut(s)	21, 280, 691
AsuC2I	CCSGG	2 cut(s)	227, 482
AsuHPI	GGTGA	2 cut(s)	107, 835
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	280, 691
BanI	GGYRCC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	731
BbvCI	CCTCAGC	1 cut(s)	654
BccI	CCATC	4 cut(s)	146, 176, 316, 485
BceAI	ACGGC	4 cut(s)	76, 190, 274, 502
BciT130I	CCWGG	1 cut(s)	696
BcnI	CCSGG	2 cut(s)	227, 482
BcoDI	GTCTC	3 cut(s)	191, 603, 680
BfoI	RGCGCY	1 cut(s)	402
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	3 cut(s)	227, 482, 696
Bme18I	GGWCC	2 cut(s)	280, 691
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	3 cut(s)	21, 280, 691
BmiI	GGNNCC	2 cut(s)	400, 693
BmrFI	CCNGG	3 cut(s)	227, 482, 696
BoxI	GACNNNNGTC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	731
Bpu10I	CCTNAGC	1 cut(s)	654
BpuMI	CCSGG	2 cut(s)	227, 482
BsaHI	GRCGYC	3 cut(s)	63, 261, 399
BsaI	GGTCTC	2 cut(s)	191, 680
BsaJI	CCNNGG	3 cut(s)	256, 565, 694
BsaWI	WCCGGW	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	232
Bse118I	RCCGGY	1 cut(s)	734
BseAI	TCCGGA	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	696
BseDI	CCNNGG	3 cut(s)	256, 565, 694
BseGI	GGATG	2 cut(s)	132, 477
BseLI	CCNNNNNNNGG	1 cut(s)	232
BseMII	CTCAG	2 cut(s)	228, 668
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	22, 338, 472
BshNI	GGYRCC	1 cut(s)	398
BsiEI	CGRYCG	1 cut(s)	76
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	4 cut(s)	226, 269, 482, 735
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	232
BsmAI	GTCTC	3 cut(s)	191, 603, 680
BsmFI	GGGAC	1 cut(s)	31
BsnI	GGCC	3 cut(s)	22, 338, 472
Bso31I	GGTCTC	2 cut(s)	191, 680
BsoBI	CYCGRG	1 cut(s)	23
Bsp13I	TCCGGA	1 cut(s)	268
Bsp143I	GATC	4 cut(s)	73, 112, 765, 811
BspACI	CCGC	3 cut(s)	195, 301, 534
BspANI	GGCC	3 cut(s)	22, 338, 472
BspCNI	CTCAG	2 cut(s)	227, 667
BspEI	TCCGGA	1 cut(s)	268
BspLI	GGNNCC	2 cut(s)	400, 693
BspPI	GGATC	1 cut(s)	773
BspT107I	GGYRCC	1 cut(s)	398
BspTNI	GGTCTC	2 cut(s)	191, 680
BsrFI	RCCGGY	1 cut(s)	734
BssAI	RCCGGY	1 cut(s)	734
BssECI	CCNNGG	3 cut(s)	256, 565, 694
BssMI	GATC	4 cut(s)	73, 112, 765, 811
BssNI	GRCGYC	3 cut(s)	63, 261, 399
BssT1I	CCWWGG	1 cut(s)	565
Bst2UI	CCWGG	1 cut(s)	696
Bst4CI	ACNGT	4 cut(s)	45, 276, 761, 772
BstACI	GRCGYC	3 cut(s)	63, 261, 399
BstC8I	GCNNGC	2 cut(s)	223, 380
BstDEI	CTNAG	3 cut(s)	214, 626, 654
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	2 cut(s)	132, 477
BstH2I	RGCGCY	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	4 cut(s)	76, 115, 768, 814
BstMAI	GTCTC	3 cut(s)	191, 603, 680
BstMBI	GATC	4 cut(s)	73, 112, 765, 811
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 788
BstNI	CCWGG	1 cut(s)	696
BstNSI	RCATGY	1 cut(s)	731
BstPAI	GACNNNNGTC	1 cut(s)	183
BstSCI	CCNGG	3 cut(s)	225, 480, 694
BstV2I	GAAGAC	1 cut(s)	731
BstXI	CCANNNNNNTGG	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	22, 338, 472
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	132, 477
BtsIMutI	CAGTG	2 cut(s)	89, 768
Cac8I	GCNNGC	2 cut(s)	223, 380
CaiI	CAGNNNCTG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	401
Cfr10I	RCCGGY	1 cut(s)	734
Cfr13I	GGNCC	3 cut(s)	21, 280, 691
CseI	GACGC	3 cut(s)	52, 250, 295
Csp6I	GTAC	3 cut(s)	41, 68, 79
CviAII	CATG	3 cut(s)	703, 728, 788
CviQI	GTAC	3 cut(s)	41, 68, 79
DdeI	CTNAG	3 cut(s)	214, 626, 654
DinI	GGCGCC	1 cut(s)	400
DpnI	GATC	4 cut(s)	75, 114, 767, 813
DpnII	GATC	4 cut(s)	73, 112, 765, 811
Eco130I	CCWWGG	1 cut(s)	565
Eco147I	AGGCCT	1 cut(s)	338
Eco31I	GGTCTC	2 cut(s)	191, 680
Eco47I	GGWCC	2 cut(s)	280, 691
Eco88I	CYCGRG	1 cut(s)	23
EcoRII	CCWGG	1 cut(s)	694
EcoT14I	CCWWGG	1 cut(s)	565
EgeI	GGCGCC	1 cut(s)	400
EheI	GGCGCC	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	565
FaeI	CATG	3 cut(s)	706, 731, 791
FaiI	YATR	8 cut(s)	342, 363, 372, 510, 704, 718, 729, 789
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	3 cut(s)	702, 727, 787
FauI	CCCGC	2 cut(s)	294, 527
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	2 cut(s)	119, 464
Fsp4HI	GCNGC	1 cut(s)	195
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	402
HaeIII	GGCC	3 cut(s)	22, 338, 472
HapII	CCGG	4 cut(s)	226, 269, 482, 735
HgaI	GACGC	3 cut(s)	52, 250, 295
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	3 cut(s)	63, 261, 399
Hin1II	CATG	3 cut(s)	706, 731, 791
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HinfI	GANTC	1 cut(s)	890
HpaII	CCGG	4 cut(s)	226, 269, 482, 735
HphI	GGTGA	2 cut(s)	107, 835
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	9 cut(s)	38, 55, 112, 169, 217, 246, 691, 749, 809
Hpy188III	TCNNGA	4 cut(s)	269, 407, 863, 887
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	2 cut(s)	68, 182
HpyAV	CCTTC	6 cut(s)	286, 359, 440, 448, 483, 541
HpyCH4III	ACNGT	4 cut(s)	45, 276, 761, 772
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 788
HpyF3I	CTNAG	3 cut(s)	214, 626, 654
Hsp92I	GRCGYC	3 cut(s)	63, 261, 399
Hsp92II	CATG	3 cut(s)	706, 731, 791
HspAI	GCGC	1 cut(s)	399
KasI	GGCGCC	1 cut(s)	398
Kpn2I	TCCGGA	1 cut(s)	268
Kzo9I	GATC	4 cut(s)	73, 112, 765, 811
LmnI	GCTCC	3 cut(s)	113, 375, 787
MaeIII	GTNAC	1 cut(s)	416
MalI	GATC	4 cut(s)	75, 114, 767, 813
MboI	GATC	4 cut(s)	73, 112, 765, 811
MboII	GAAGA	4 cut(s)	431, 578, 590, 731
MluCI	AATT	7 cut(s)	4, 596, 634, 816, 826, 872, 881
Mly113I	GGCGCC	1 cut(s)	399
MmeI	TCCRAC	3 cut(s)	175, 258, 743
MnlI	CCTC	7 cut(s)	211, 507, 568, 596, 663, 674, 692
MroI	TCCGGA	1 cut(s)	268
MroXI	GAANNNNTTC	1 cut(s)	582
MseI	TTAA	1 cut(s)	542
MspI	CCGG	4 cut(s)	226, 269, 482, 735
MspR9I	CCNGG	3 cut(s)	227, 482, 696
MvaI	CCWGG	1 cut(s)	696
MwoI	GCNNNNNNNGC	2 cut(s)	203, 788
NarI	GGCGCC	1 cut(s)	399
NciI	CCSGG	2 cut(s)	227, 482
NdeII	GATC	4 cut(s)	73, 112, 765, 811
NlaIII	CATG	3 cut(s)	706, 731, 791
NlaIV	GGNNCC	2 cut(s)	400, 693
NmuCI	GTSAC	1 cut(s)	416
NspI	RCATGY	1 cut(s)	731
PceI	AGGCCT	1 cut(s)	338
PciI	ACATGT	1 cut(s)	727
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	1 cut(s)	890
PfoI	TCCNGGA	1 cut(s)	480
PkrI	GCNGC	1 cut(s)	196
Ple19I	CGATCG	1 cut(s)	76
PluTI	GGCGCC	1 cut(s)	402
PscI	ACATGT	1 cut(s)	727
PshAI	GACNNNNGTC	1 cut(s)	183
PshBI	ATTAAT	1 cut(s)	542
Psp6I	CCWGG	1 cut(s)	694
PspGI	CCWGG	1 cut(s)	694
PspN4I	GGNNCC	2 cut(s)	400, 693
PspPI	GGNCC	3 cut(s)	21, 280, 691
PstNI	CAGNNNCTG	1 cut(s)	49
PvuI	CGATCG	1 cut(s)	76
RsaI	GTAC	3 cut(s)	42, 69, 80
RsaNI	GTAC	3 cut(s)	41, 68, 79
SaqAI	TTAA	1 cut(s)	542
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	4 cut(s)	73, 112, 765, 811
Sau96I	GGNCC	3 cut(s)	21, 280, 691
ScrFI	CCNGG	3 cut(s)	227, 482, 696
SetI	ASST	8 cut(s)	110, 297, 531, 567, 666, 710, 784, 825
SfoI	GGCGCC	1 cut(s)	400
SinI	GGWCC	2 cut(s)	280, 691
Sse9I	AATT	7 cut(s)	4, 596, 634, 816, 826, 872, 881
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	3 cut(s)	195, 301, 534
SspDI	GGCGCC	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	225, 480, 694
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	4 cut(s)	45, 276, 761, 772
TaqI	TCGA	2 cut(s)	144, 888
TasI	AATT	7 cut(s)	4, 596, 634, 816, 826, 872, 881
TatI	WGTACW	1 cut(s)	40
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	1 cut(s)	890
Tru1I	TTAA	1 cut(s)	542
Tru9I	TTAA	1 cut(s)	542
TscAI	CASTG	2 cut(s)	96, 775
TseFI	GTSAC	1 cut(s)	416
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	7 cut(s)	17, 344, 378, 560, 738, 821, 882
TspGWI	ACGGA	3 cut(s)	110, 179, 432
TspRI	CASTG	2 cut(s)	96, 775
VpaK11BI	GGWCC	2 cut(s)	280, 691
VspI	ATTAAT	1 cut(s)	542
XapI	RAATTY	5 cut(s)	596, 634, 816, 826, 872
XceI	RCATGY	1 cut(s)	731
XmnI	GAANNNNTTC	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.