Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0010173

Physical Location & Seq

Genomic Coordinates Reverse (-)

22300762 .. 22303393

Gene Structure 2632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g20130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGAATTGCCCACAGGATTGGCCAGAGCCAATAGTCCGAGTACAATCCTTATCCGACAGCTCCGTAATCCCAGATCGATACATCAAGCCCCCACCCGATAGACCCACCTATATCTCATCATCCGATATTTCTGATCATGCCAACATCCCAGTTATTGACTTACAAGGCTTATCCGGCGAGGACGATCGCCTGCGTGCCGCCACGCTTAGCCAAATCTCCGAGGCCTGCCGTGAGTGGGGGTTCTTCCAAGTGGTGAACCACGGCGTTAGCCCGGAACTGATGGACAAAACCCAGCAGGTTTGGCGGGATTTTTTCCATTTGCCGATGGAGTTGAAGCAGGTCTATGCCAACTCACCAAAGACTTATGAAGGGTATGGGAGTAGGCTTGGAGTTGAGAGAGGCGCCATTCTTGACTGGAGTGATTACTATTTCCTTCACTATCTTCCGTCCTGCTTGAAGGACTACAACAAGTGGCCTGCCCTCCCTGATTACGGAAGGGAAGTAATAGATGAGTATGGAAAGGAGGTAGTGAAGCTTGGTGGGAGGATATTGAAGGCTTTGTCACTTAACCTTGGATTAGGAGAAGACTTTCTCCAAAATGCATTTGGTGGCCAAGACATTGGGGCATGTCTAAGGACCAACTTTTATCCAAAGTGCCCCCAGCCTGACCTGACCCTGGGCCTGTCGTCGCACTCGGACCCCGGCGGCATGACCATTCTGCTGGCCGACCAACAAGTCCCTGGTCTACAAGTCCGGAAAGATGGCACTTGGATCACGGTGAAACCAGCTCCACACGCTTTTATTGTCAATATTGGTGATCAAATTCAGGTCTTAAGTAATGCAACATACAAGAGCGTAGAGCACAGGGTGATCGTAAACCCAGCAAAAGAGAGACTCTCGTTGGCCTTCTTCTACAATCCAAAAAGCGACATACCAATTGAGCCGGCGAAGGAGCTTGTAACGCCGGACAAACCTGCACTGTATTCTCCGAAGACATTCAATGAATACAGGCTTTACATAAGATTGAATGGCCCTCGAGGAAAATCTCAAGTCGAAGGCTTAAAGTCTCAACAAAATACATCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009628 GO:0009636 GO:0009966 GO:0009987 GO:0010646 GO:0016787 GO:0016810 GO:0023051 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0080167 GO:0097237 GO:0120091 GO:2000022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

362

Amino Acids

40.56

Weight (kDa)

5.85

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05600 AT5G05600
fragaria_vesca	FvH4_7g24550 FvH4_7g24550 FvH4_7g24550
malus_domestica	MD01G1153600.v1.1 MD07G1222600.v1.1
prunus_persica	Prupe.2G250900_v2.0.a1
pyrus_communis	pycom01g17120 pycom07g20130
rosa_chinensis	RchiOBHm_Chr1g0370391
rosa_laevigata	RLG00000027052
rosa_multiflora	Rmu_sc0005656.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286630
rosa_rugosa	Rorug01G0356100
rosa_samantha	Rh1AG364400 Rh1BG327700 Rh1CG340700 Rh1DG358000
rosa_wichuraiana	Rw1G032070 Rw1G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	734
AbsI	CCTCGAGG	1 cut(s)	1035
Acc36I	ACCTGC	3 cut(s)	286, 328, 982
AccB1I	GGYRCC	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	745
AccIII	TCCGGA	1 cut(s)	753
AciI	CCGC	3 cut(s)	198, 304, 705
AclWI	GGATC	1 cut(s)	779
AcoI	YGGCCR	3 cut(s)	20, 610, 723
AcsI	RAATTY	1 cut(s)	822
AcyI	GRCGYC	1 cut(s)	402
AdeI	CACNNNGTG	1 cut(s)	868
AfaI	GTAC	1 cut(s)	42
AfiI	CCNNNNNNNGG	3 cut(s)	235, 491, 676
AflII	CTTAAG	1 cut(s)	832
AgsI	TTSAA	5 cut(s)	334, 457, 553, 1000, 1027
AjnI	CCWGG	2 cut(s)	675, 739
AluBI	AGCT	4 cut(s)	60, 535, 788, 955
AluI	AGCT	4 cut(s)	60, 535, 788, 955
Alw21I	GWGCWC	1 cut(s)	864
Alw26I	GTCTC	2 cut(s)	886, 1071
AlwI	GGATC	1 cut(s)	779
Ama87I	CYCGRG	1 cut(s)	1035
Aor13HI	TCCGGA	1 cut(s)	753
AoxI	GGCC	8 cut(s)	20, 222, 473, 610, 679, 723, 903, 1030
ApoI	RAATTY	1 cut(s)	822
Asp700I	GAANNNNTTC	2 cut(s)	588, 995
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	4 cut(s)	636, 679, 697, 1031
AsuC2I	CCSGG	2 cut(s)	272, 702
AsuHPI	GGTGA	5 cut(s)	265, 345, 790, 827, 880
AvaI	CYCGRG	1 cut(s)	1035
AvaII	GGWCC	2 cut(s)	636, 697
BaeGI	GKGCMC	1 cut(s)	659
BalI	TGGCCA	2 cut(s)	22, 612
BanI	GGYRCC	1 cut(s)	401
BbsI	GAAGAC	2 cut(s)	591, 998
Bbv12I	GWGCWC	1 cut(s)	864
BccI	CCATC	3 cut(s)	274, 319, 755
BceAI	ACGGC	2 cut(s)	213, 277
BciT130I	CCWGG	2 cut(s)	677, 741
BclI	TGATCA	2 cut(s)	133, 817
BcnI	CCSGG	2 cut(s)	272, 702
BcoDI	GTCTC	2 cut(s)	886, 1071
BfoI	RGCGCY	1 cut(s)	405
BfrI	CTTAAG	1 cut(s)	832
BfuAI	ACCTGC	3 cut(s)	286, 328, 982
BisI	GCNGC	2 cut(s)	198, 706
BlpI	GCTNAGC	1 cut(s)	206
BlsI	GCNGC	2 cut(s)	199, 707
Bme1390I	CCNGG	4 cut(s)	272, 677, 702, 741
Bme18I	GGWCC	2 cut(s)	636, 697
BmeT110I	CYCGRG	1 cut(s)	1035
BmgT120I	GGNCC	4 cut(s)	636, 679, 697, 1031
BmiI	GGNNCC	2 cut(s)	403, 699
BmrFI	CCNGG	4 cut(s)	272, 677, 702, 741
BmrI	ACTGGG	1 cut(s)	143
BmuI	ACTGGG	1 cut(s)	143
BpiI	GAAGAC	2 cut(s)	591, 998
BplI	GAGNNNNNCTC	2 cut(s)	881, 913
BpmI	CTGGAG	1 cut(s)	436
Bpu1102I	GCTNAGC	1 cut(s)	206
BpuEI	CTTGAG	1 cut(s)	1032
BpuMI	CCSGG	2 cut(s)	272, 702
Bsa29I	ATCGAT	1 cut(s)	76
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	7 cut(s)	219, 259, 571, 675, 676, 700, 739
BsaWI	WCCGGW	1 cut(s)	753
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 491, 676
Bse118I	RCCGGY	1 cut(s)	943
Bse1I	ACTGG	2 cut(s)	149, 419
BseAI	TCCGGA	1 cut(s)	753
BseBI	CCWGG	2 cut(s)	677, 741
BseCI	ATCGAT	1 cut(s)	76
BseDI	CCNNGG	7 cut(s)	219, 259, 571, 675, 676, 700, 739
BseGI	GGATG	2 cut(s)	119, 144
BseLI	CCNNNNNNNGG	3 cut(s)	235, 491, 676
BseNI	ACTGG	2 cut(s)	149, 419
BseSI	GKGCMC	1 cut(s)	659
BseYI	CCCAGC	3 cut(s)	291, 660, 880
BsgI	GTGCAG	1 cut(s)	960
Bsh1285I	CGRYCG	1 cut(s)	187
BshFI	GGCC	8 cut(s)	22, 224, 475, 612, 681, 725, 905, 1032
BshNI	GGYRCC	1 cut(s)	401
BshVI	ATCGAT	1 cut(s)	76
BsiEI	CGRYCG	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	864
BsiHKCI	CYCGRG	1 cut(s)	1035
BsiSI	CCGG	6 cut(s)	174, 272, 702, 754, 944, 965
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	3 cut(s)	235, 491, 676
BsmAI	GTCTC	2 cut(s)	886, 1071
BsmFI	GGGAC	1 cut(s)	722
BsnI	GGCC	8 cut(s)	22, 224, 475, 612, 681, 725, 905, 1032
BsoBI	CYCGRG	1 cut(s)	1035
Bsp1286I	GDGCHC	2 cut(s)	659, 864
Bsp13I	TCCGGA	1 cut(s)	753
Bsp143I	GATC	6 cut(s)	73, 133, 184, 771, 817, 870
Bsp1720I	GCTNAGC	1 cut(s)	206
BspACI	CCGC	3 cut(s)	198, 304, 705
BspANI	GGCC	8 cut(s)	22, 224, 475, 612, 681, 725, 905, 1032
BspDI	ATCGAT	1 cut(s)	76
BspEI	TCCGGA	1 cut(s)	753
BspLI	GGNNCC	2 cut(s)	403, 699
BspMI	ACCTGC	3 cut(s)	286, 328, 982
BspPI	GGATC	1 cut(s)	779
BspT107I	GGYRCC	1 cut(s)	401
BspTI	CTTAAG	1 cut(s)	832
BsrFI	RCCGGY	1 cut(s)	943
BsrI	ACTGG	2 cut(s)	149, 419
BssAI	RCCGGY	1 cut(s)	943
BssECI	CCNNGG	7 cut(s)	219, 259, 571, 675, 676, 700, 739
BssMI	GATC	6 cut(s)	73, 133, 184, 771, 817, 870
BssNI	GRCGYC	1 cut(s)	402
BssT1I	CCWWGG	1 cut(s)	571
Bst2UI	CCWGG	2 cut(s)	677, 741
Bst4CI	ACNGT	2 cut(s)	778, 981
BstACI	GRCGYC	1 cut(s)	402
BstAFI	CTTAAG	1 cut(s)	832
BstC8I	GCNNGC	6 cut(s)	191, 195, 226, 477, 723, 945
BstDEI	CTNAG	2 cut(s)	206, 632
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	2 cut(s)	119, 144
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	6 cut(s)	76, 136, 187, 774, 820, 873
BstMAI	GTCTC	2 cut(s)	886, 1071
BstMBI	GATC	6 cut(s)	73, 133, 184, 771, 817, 870
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	4 cut(s)	174, 301, 794, 961
BstNI	CCWGG	2 cut(s)	677, 741
BstNSI	RCATGY	1 cut(s)	630
BstSCI	CCNGG	4 cut(s)	270, 675, 700, 739
BstSLI	GKGCMC	1 cut(s)	659
BstV2I	GAAGAC	2 cut(s)	591, 998
BstXI	CCANNNNNNTGG	3 cut(s)	18, 620, 721
Bsu15I	ATCGAT	1 cut(s)	76
BsuRI	GGCC	8 cut(s)	22, 224, 475, 612, 681, 725, 905, 1032
BsuTUI	ATCGAT	1 cut(s)	76
BtgI	CCRYGG	1 cut(s)	259
BtsCI	GGATG	2 cut(s)	119, 144
BtsIMutI	CAGTG	1 cut(s)	977
BveI	ACCTGC	3 cut(s)	286, 328, 982
Cac8I	GCNNGC	6 cut(s)	191, 195, 226, 477, 723, 945
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	1 cut(s)	943
Cfr13I	GGNCC	4 cut(s)	636, 679, 697, 1031
ClaI	ATCGAT	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	41
CviAII	CATG	3 cut(s)	137, 627, 709
CviQI	GTAC	1 cut(s)	41
DdeI	CTNAG	2 cut(s)	206, 632
DinI	GGCGCC	1 cut(s)	403
DpnI	GATC	6 cut(s)	75, 135, 186, 773, 819, 872
DpnII	GATC	6 cut(s)	73, 133, 184, 771, 817, 870
DraIII	CACNNNGTG	1 cut(s)	868
DrdI	GACNNNNNNGTC	1 cut(s)	734
DseDI	GACNNNNNNGTC	1 cut(s)	734
EaeI	YGGCCR	3 cut(s)	20, 610, 723
Eco130I	CCWWGG	1 cut(s)	571
Eco147I	AGGCCT	1 cut(s)	224
Eco47I	GGWCC	2 cut(s)	636, 697
Eco88I	CYCGRG	1 cut(s)	1035
EcoRII	CCWGG	2 cut(s)	675, 739
EcoT14I	CCWWGG	1 cut(s)	571
EcoT22I	ATGCAT	1 cut(s)	604
EgeI	GGCGCC	1 cut(s)	403
EheI	GGCGCC	1 cut(s)	403
ErhI	CCWWGG	1 cut(s)	571
FaeI	CATG	3 cut(s)	140, 630, 712
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	3 cut(s)	136, 626, 708
FauI	CCCGC	1 cut(s)	297
FbaI	TGATCA	2 cut(s)	133, 817
FblI	GTMKAC	1 cut(s)	745
Fnu4HI	GCNGC	2 cut(s)	198, 706
FokI	GGATG	2 cut(s)	106, 131
Fsp4HI	GCNGC	2 cut(s)	198, 706
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	2 cut(s)	198, 706
GsaI	CCCAGC	3 cut(s)	295, 664, 884
GsuI	CTGGAG	1 cut(s)	436
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	8 cut(s)	22, 224, 475, 612, 681, 725, 905, 1032
HapII	CCGG	6 cut(s)	174, 272, 702, 754, 944, 965
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	3 cut(s)	140, 630, 712
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HindIII	AAGCTT	1 cut(s)	533
HinfI	GANTC	1 cut(s)	894
HpaII	CCGG	6 cut(s)	174, 272, 702, 754, 944, 965
HphI	GGTGA	5 cut(s)	265, 345, 790, 827, 880
Hpy166II	GTNNAC	3 cut(s)	256, 746, 877
Hpy188I	TCNGA	7 cut(s)	38, 55, 124, 133, 220, 697, 990
Hpy188III	TCNNGA	3 cut(s)	410, 754, 1083
Hpy8I	GTNNAC	3 cut(s)	256, 746, 877
Hpy99I	CGWCG	1 cut(s)	691
HpyAV	CCTTC	8 cut(s)	362, 443, 451, 489, 547, 916, 943, 1049
HpyCH4III	ACNGT	2 cut(s)	778, 981
HpyCH4V	TGCA	3 cut(s)	602, 842, 977
HpyF10VI	GCNNNNNNNGC	4 cut(s)	174, 301, 794, 961
HpyF3I	CTNAG	2 cut(s)	206, 632
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	3 cut(s)	140, 630, 712
HspAI	GCGC	1 cut(s)	402
KasI	GGCGCC	1 cut(s)	401
Kpn2I	TCCGGA	1 cut(s)	753
KroI	GCCGGC	1 cut(s)	943
KroNI	GCCGGC	1 cut(s)	945
Ksp22I	TGATCA	2 cut(s)	133, 817
Kzo9I	GATC	6 cut(s)	73, 133, 184, 771, 817, 870
LmnI	GCTCC	3 cut(s)	65, 793, 952
MaeIII	GTNAC	2 cut(s)	561, 958
MalI	GATC	6 cut(s)	75, 135, 186, 773, 819, 872
MboI	GATC	6 cut(s)	73, 133, 184, 771, 817, 870
MboII	GAAGA	5 cut(s)	235, 434, 596, 901, 1003
MfeI	CAATTG	1 cut(s)	936
MhlI	GDGCHC	2 cut(s)	659, 864
MlsI	TGGCCA	2 cut(s)	22, 612
MluCI	AATT	3 cut(s)	4, 822, 936
MluNI	TGGCCA	2 cut(s)	22, 612
Mly113I	GGCGCC	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	888
MmeI	TCCRAC	1 cut(s)	78
MnlI	CCTC	8 cut(s)	172, 214, 392, 491, 517, 537, 1031, 1044
Mox20I	TGGCCA	2 cut(s)	22, 612
Mph1103I	ATGCAT	1 cut(s)	604
MroI	TCCGGA	1 cut(s)	753
MroNI	GCCGGC	1 cut(s)	943
MroXI	GAANNNNTTC	2 cut(s)	588, 995
MscI	TGGCCA	2 cut(s)	22, 612
MseI	TTAA	3 cut(s)	567, 833, 1061
Msp20I	TGGCCA	2 cut(s)	22, 612
MspCI	CTTAAG	1 cut(s)	832
MspI	CCGG	6 cut(s)	174, 272, 702, 754, 944, 965
MspR9I	CCNGG	4 cut(s)	272, 677, 702, 741
MunI	CAATTG	1 cut(s)	936
MvaI	CCWGG	2 cut(s)	677, 741
MwoI	GCNNNNNNNGC	4 cut(s)	174, 301, 794, 961
NaeI	GCCGGC	1 cut(s)	945
NarI	GGCGCC	1 cut(s)	402
NciI	CCSGG	2 cut(s)	272, 702
NdeII	GATC	6 cut(s)	73, 133, 184, 771, 817, 870
NgoMIV	GCCGGC	1 cut(s)	943
NlaIII	CATG	3 cut(s)	140, 630, 712
NlaIV	GGNNCC	2 cut(s)	403, 699
NmuCI	GTSAC	1 cut(s)	561
NsiI	ATGCAT	1 cut(s)	604
NspI	RCATGY	1 cut(s)	630
PaeR7I	CTCGAG	1 cut(s)	1035
PasI	CCCWGGG	1 cut(s)	676
PceI	AGGCCT	1 cut(s)	224
PdiI	GCCGGC	1 cut(s)	945
PdmI	GAANNNNTTC	2 cut(s)	588, 995
PkrI	GCNGC	2 cut(s)	199, 707
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	1 cut(s)	888
PluTI	GGCGCC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	888
Psp6I	CCWGG	2 cut(s)	675, 739
PspFI	CCCAGC	3 cut(s)	291, 660, 880
PspGI	CCWGG	2 cut(s)	675, 739
PspN4I	GGNNCC	2 cut(s)	403, 699
PspPI	GGNCC	4 cut(s)	636, 679, 697, 1031
PspXI	VCTCGAGB	1 cut(s)	1035
PvuI	CGATCG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	42
RsaNI	GTAC	1 cut(s)	41
SaqAI	TTAA	3 cut(s)	567, 833, 1061
SatI	GCNGC	2 cut(s)	198, 706
Sau3AI	GATC	6 cut(s)	73, 133, 184, 771, 817, 870
Sau96I	GGNCC	4 cut(s)	636, 679, 697, 1031
SchI	GAGTC	1 cut(s)	888
ScrFI	CCNGG	4 cut(s)	272, 677, 702, 741
SduI	GDGCHC	2 cut(s)	659, 864
SfoI	GGCGCC	1 cut(s)	403
Sfr274I	CTCGAG	1 cut(s)	1035
SinI	GGWCC	2 cut(s)	636, 697
SlaI	CTCGAG	1 cut(s)	1035
SmlI	CTYRAG	3 cut(s)	832, 1035, 1047
SmoI	CTYRAG	3 cut(s)	832, 1035, 1047
Sse9I	AATT	3 cut(s)	4, 822, 936
SseBI	AGGCCT	1 cut(s)	224
SsiI	CCGC	3 cut(s)	198, 304, 705
SspDI	GGCGCC	1 cut(s)	401
SspI	AATATT	1 cut(s)	811
StuI	AGGCCT	1 cut(s)	224
StyD4I	CCNGG	4 cut(s)	270, 675, 700, 739
StyI	CCWWGG	1 cut(s)	571
TaaI	ACNGT	2 cut(s)	778, 981
TaqI	TCGA	3 cut(s)	76, 1036, 1053
TasI	AATT	3 cut(s)	4, 822, 936
TatI	WGTACW	1 cut(s)	40
TauI	GCSGC	2 cut(s)	200, 708
Tru1I	TTAA	3 cut(s)	567, 833, 1061
Tru9I	TTAA	3 cut(s)	567, 833, 1061
TscAI	CASTG	1 cut(s)	984
TseFI	GTSAC	1 cut(s)	561
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	3 cut(s)	17, 381, 1017
TspGWI	ACGGA	3 cut(s)	52, 435, 507
TspRI	CASTG	1 cut(s)	984
Vha464I	CTTAAG	1 cut(s)	832
VpaK11BI	GGWCC	2 cut(s)	636, 697
XapI	RAATTY	1 cut(s)	822
XceI	RCATGY	1 cut(s)	630
XcmI	CCANNNNNNNNNTGG	2 cut(s)	602, 737
XhoI	CTCGAG	1 cut(s)	1035
XmiI	GTMKAC	1 cut(s)	745
XmnI	GAANNNNTTC	2 cut(s)	588, 995
Zsp2I	ATGCAT	1 cut(s)	604

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.