Rorug01G0356100

Belongs to the iron ascorbate-dependent oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0010173
Physical Location & Seq
Reverse (-)
47226853 .. 47227728
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0356100.1

Sequence Viewer

Length: 876 bp
ATGGAAGCTCACAAAATGTTCTCTGTCACCTACCTACTATTCCTCACACTCACCATTTTCTCTGCCACCTCAGCACGAACTCTCGAGGAGCAGCCACTGGTTCCTGTTGTCCCTCCGGTGGTGTCGAATACAATTGGCACACCTTCCATCAATGCTGCACCAGTGGTCACACCTTCAGCTTCACAGCCTGCCACGGTGGCTGATGCTGATGACCACCATTCCCTAGTCTTCTTCCTGCACGACATTCTAGGTGGCACGAACCCCACAGCTAGAGCCATGACAGGGATAGTCAACAGCCCTGCAGTCAATGGACAAGTACCATTTGCCAAACCAAATGGAGCAGTCCTGCCATTTAACAATGGAATACCCCAGAACAACAACAACAACGGTATTCTAAGCAACAACAACATCCCGTTTCTCACTGGACTTAGTGGAGCAACGCAAAATGTGGTACAAAACAATAACAACAACAATTTCATCAATGGTGGGCAGCTCTTTCCAGGAGGCTCCACACTCCAAAACCTCATGTTCGGCACAATGAGTGTGTTCGATGATGAGCTAACTGAAGGGCATGAGCTCGGGTCTGGTTTGGTTGGCAAGGCACAAGGGTTCTATGTGGTGAGTTCTGAAGATGGTACGAGTCAGACAATGGCTTTCACTGCTATGTTTCAAAGTGGGGGTTATGCTGATAGCCTTAGCTTCTTTGGGGTCCATCGTGTGGCTGCGTCGGAGTCTCACTTGGCTATCATGGGTGGCACCGGAAAGTATGTTGATGCGAAAGGGTTTGCCATTGTTAAGACATTCCCGGCTACCAATGAGCATCAAACTGATGGAGCAGAGACCTTGTTGCAGTTCAGTGTTTATATTACTTACTAG

Protein Analysis

291

Amino Acids

30.62

Weight (kDa)

4.93

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dirigent PF03018 154 - 289 2.9e-27 Dirigent-like protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G05600 AT5G05600
fragaria_vesca FvH4_7g24550 FvH4_7g24550 FvH4_7g24550
malus_domestica MD01G1153600.v1.1 MD07G1222600.v1.1
prunus_persica Prupe.2G250900_v2.0.a1
pyrus_communis pycom01g17120 pycom07g20130
rosa_chinensis RchiOBHm_Chr1g0370391
rosa_laevigata RLG00000027052
rosa_multiflora Rmu_sc0005656.1_g000002
rosa_roxburghii Rroxscaffold_4G00286630
rosa_rugosa Rorug01G0356100
rosa_samantha Rh1AG364400 Rh1BG327700 Rh1CG340700 Rh1DG358000
rosa_wichuraiana Rw1G032070 Rw1G032120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 755
AccB7I CCANNNNNTGG 1 cut(s) 718
AcuI CTGAAG 3 cut(s) 159, 585, 648
AfaI GTAC 3 cut(s) 318, 453, 637
AfiI CCNNNNNNNGG 3 cut(s) 118, 282, 718
AgsI TTSAA 1 cut(s) 671
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 7 cut(s) 8, 179, 269, 493, 559, 577, 699
AluI AGCT 7 cut(s) 8, 179, 269, 493, 559, 577, 699
Alw21I GWGCWC 1 cut(s) 579
Alw26I GTCTC 2 cut(s) 738, 833
AlwNI CAGNNNCTG 1 cut(s) 97
Ama87I CYCGRG 2 cut(s) 83, 578
ApeKI GCWGC 4 cut(s) 91, 155, 490, 722
AspS9I GGNCC 1 cut(s) 709
AsuC2I CCSGG 1 cut(s) 806
AsuHPI GGTGA 3 cut(s) 19, 43, 631
AvaI CYCGRG 2 cut(s) 83, 578
AvaII GGWCC 1 cut(s) 709
BanI GGYRCC 1 cut(s) 755
BanII GRGCYC 1 cut(s) 579
BbsI GAAGAC 1 cut(s) 220
Bbv12I GWGCWC 1 cut(s) 579
BbvCI CCTCAGC 1 cut(s) 70
BbvI GCAGC 4 cut(s) 103, 142, 502, 709
BccI CCATC 4 cut(s) 155, 626, 720, 824
BciT130I CCWGG 1 cut(s) 501
BcnI CCSGG 1 cut(s) 806
BcoDI GTCTC 2 cut(s) 738, 833
BfaI CTAG 4 cut(s) 224, 248, 270, 874
BfmI CTRYAG 1 cut(s) 300
BglI GCCNNNNNGGC 1 cut(s) 197
BisI GCNGC 4 cut(s) 92, 156, 491, 723
BlsI GCNGC 4 cut(s) 93, 157, 492, 724
Bme1390I CCNGG 2 cut(s) 501, 806
Bme18I GGWCC 1 cut(s) 709
BmeT110I CYCGRG 2 cut(s) 83, 578
BmgT120I GGNCC 1 cut(s) 709
BmiI GGNNCC 4 cut(s) 102, 508, 710, 757
BmrFI CCNGG 2 cut(s) 501, 806
BmsI GCATC 3 cut(s) 193, 763, 829
BpiI GAAGAC 1 cut(s) 220
Bpu10I CCTNAGC 2 cut(s) 70, 695
BpuMI CCSGG 1 cut(s) 806
BsaI GGTCTC 1 cut(s) 833
BsaJI CCNNGG 1 cut(s) 192
BsaWI WCCGGW 2 cut(s) 115, 758
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 282, 718
Bse1I ACTGG 3 cut(s) 102, 161, 427
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 1 cut(s) 192
BseGI GGATG 1 cut(s) 408
BseLI CCNNNNNNNGG 3 cut(s) 118, 282, 718
BseMII CTCAG 1 cut(s) 84
BseNI ACTGG 3 cut(s) 102, 161, 427
BseRI GAGGAG 1 cut(s) 101
BseXI GCAGC 4 cut(s) 103, 142, 502, 709
BsgI GTGCAG 2 cut(s) 141, 221
BshNI GGYRCC 1 cut(s) 755
BsiHKAI GWGCWC 1 cut(s) 579
BsiHKCI CYCGRG 2 cut(s) 83, 578
BsiSI CCGG 3 cut(s) 116, 759, 806
BslFI GGGAC 1 cut(s) 95
BslI CCNNNNNNNGG 3 cut(s) 118, 282, 718
BsmAI GTCTC 2 cut(s) 738, 833
BsmFI GGGAC 1 cut(s) 95
Bso31I GGTCTC 1 cut(s) 833
BsoBI CYCGRG 2 cut(s) 83, 578
Bsp1286I GDGCHC 1 cut(s) 579
BspCNI CTCAG 1 cut(s) 83
BspLI GGNNCC 4 cut(s) 102, 508, 710, 757
BspMAI CTGCAG 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 755
BspTNI GGTCTC 1 cut(s) 833
BsrI ACTGG 3 cut(s) 102, 161, 427
BssECI CCNNGG 1 cut(s) 192
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 2 cut(s) 196, 389
BstC8I GCNNGC 1 cut(s) 189
BstDEI CTNAG 4 cut(s) 70, 395, 428, 695
BstDSI CCRYGG 1 cut(s) 192
BstF5I GGATG 1 cut(s) 408
BstMAI GTCTC 2 cut(s) 738, 833
BstMWI GCNNNNNNNGC 3 cut(s) 71, 197, 659
BstNI CCWGG 1 cut(s) 501
BstSCI CCNGG 2 cut(s) 499, 804
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 4 cut(s) 103, 142, 502, 709
BstV2I GAAGAC 1 cut(s) 220
BtgI CCRYGG 1 cut(s) 192
BtsCI GGATG 1 cut(s) 408
BtsI GCAGTG 1 cut(s) 657
BtsIMutI CAGTG 5 cut(s) 95, 168, 420, 657, 862
Cac8I GCNNGC 1 cut(s) 189
CaiI CAGNNNCTG 1 cut(s) 97
Cfr13I GGNCC 1 cut(s) 709
CseI GACGC 1 cut(s) 714
Csp6I GTAC 3 cut(s) 317, 452, 636
CviAII CATG 4 cut(s) 277, 526, 572, 748
CviQI GTAC 3 cut(s) 317, 452, 636
DdeI CTNAG 4 cut(s) 70, 395, 428, 695
Ecl136II GAGCTC 1 cut(s) 577
Eco24I GRGCYC 1 cut(s) 579
Eco31I GGTCTC 1 cut(s) 833
Eco47I GGWCC 1 cut(s) 709
Eco53kI GAGCTC 1 cut(s) 577
Eco57I CTGAAG 3 cut(s) 159, 585, 648
Eco88I CYCGRG 2 cut(s) 83, 578
EcoICRI GAGCTC 1 cut(s) 577
EcoRII CCWGG 1 cut(s) 499
EcoT38I GRGCYC 1 cut(s) 579
FaeI CATG 4 cut(s) 280, 529, 575, 751
FaiI YATR 9 cut(s) 278, 527, 573, 615, 665, 684, 749, 768, 864
FaqI GGGAC 1 cut(s) 95
FatI CATG 4 cut(s) 276, 525, 571, 747
Fnu4HI GCNGC 4 cut(s) 92, 156, 491, 723
FokI GGATG 1 cut(s) 395
FriOI GRGCYC 1 cut(s) 579
Fsp4HI GCNGC 4 cut(s) 92, 156, 491, 723
FspBI CTAG 4 cut(s) 224, 248, 270, 874
GluI GCNGC 4 cut(s) 92, 156, 491, 723
HapII CCGG 3 cut(s) 116, 759, 806
HgaI GACGC 1 cut(s) 714
Hin1II CATG 4 cut(s) 280, 529, 575, 751
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 2 cut(s) 640, 731
HpaII CCGG 3 cut(s) 116, 759, 806
HphI GGTGA 3 cut(s) 19, 43, 631
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 3 cut(s) 628, 645, 730
Hpy188III TCNNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 730
HpyAV CCTTC 3 cut(s) 153, 183, 560
HpyCH4III ACNGT 2 cut(s) 196, 389
HpyCH4V TGCA 4 cut(s) 158, 238, 302, 850
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 197, 659
HpyF3I CTNAG 4 cut(s) 70, 395, 428, 695
Hsp92II CATG 4 cut(s) 280, 529, 575, 751
LmnI GCTCC 5 cut(s) 88, 338, 434, 512, 833
Lsp1109I GCAGC 4 cut(s) 103, 142, 502, 709
LweI GCATC 3 cut(s) 193, 763, 829
MaeI CTAG 4 cut(s) 224, 248, 270, 874
MaeIII GTNAC 2 cut(s) 25, 166
MboII GAAGA 3 cut(s) 220, 223, 641
MfeI CAATTG 1 cut(s) 132
MhlI GDGCHC 1 cut(s) 579
MluCI AATT 2 cut(s) 132, 472
MlyI GAGTC 2 cut(s) 649, 740
MmeI TCCRAC 1 cut(s) 708
MnlI CCTC 6 cut(s) 53, 79, 79, 123, 497, 533
MseI TTAA 2 cut(s) 354, 795
MslI CAYNNNNRTG 1 cut(s) 662
MspI CCGG 3 cut(s) 116, 759, 806
MspR9I CCNGG 2 cut(s) 501, 806
MunI CAATTG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 3 cut(s) 71, 197, 659
NciI CCSGG 1 cut(s) 806
NlaIII CATG 4 cut(s) 280, 529, 575, 751
NlaIV GGNNCC 4 cut(s) 102, 508, 710, 757
NmuCI GTSAC 2 cut(s) 25, 166
PaeR7I CTCGAG 1 cut(s) 83
PflMI CCANNNNNTGG 1 cut(s) 718
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 4 cut(s) 93, 157, 492, 724
PleI GAGTC 2 cut(s) 648, 739
PpsI GAGTC 2 cut(s) 648, 739
Psp124BI GAGCTC 1 cut(s) 579
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 4 cut(s) 102, 508, 710, 757
PspPI GGNCC 1 cut(s) 709
PstI CTGCAG 1 cut(s) 304
PstNI CAGNNNCTG 1 cut(s) 97
RsaI GTAC 3 cut(s) 318, 453, 637
RsaNI GTAC 3 cut(s) 317, 452, 636
RseI CAYNNNNRTG 1 cut(s) 662
SacI GAGCTC 1 cut(s) 579
SaqAI TTAA 2 cut(s) 354, 795
SatI GCNGC 4 cut(s) 92, 156, 491, 723
Sau96I GGNCC 1 cut(s) 709
SchI GAGTC 2 cut(s) 649, 740
ScrFI CCNGG 2 cut(s) 501, 806
SduI GDGCHC 1 cut(s) 579
SfaNI GCATC 3 cut(s) 193, 763, 829
SfcI CTRYAG 1 cut(s) 300
Sfr274I CTCGAG 1 cut(s) 83
SinI GGWCC 1 cut(s) 709
SlaI CTCGAG 1 cut(s) 83
SmiMI CAYNNNNRTG 1 cut(s) 662
SmlI CTYRAG 1 cut(s) 83
SmoI CTYRAG 1 cut(s) 83
Sse9I AATT 2 cut(s) 132, 472
SspMI CTAG 4 cut(s) 224, 248, 270, 874
SstI GAGCTC 1 cut(s) 579
StyD4I CCNGG 2 cut(s) 499, 804
TaaI ACNGT 2 cut(s) 196, 389
TaqI TCGA 3 cut(s) 84, 125, 549
TasI AATT 2 cut(s) 132, 472
Tru1I TTAA 2 cut(s) 354, 795
Tru9I TTAA 2 cut(s) 354, 795
TscAI CASTG 5 cut(s) 102, 168, 427, 664, 862
TseFI GTSAC 2 cut(s) 25, 166
TseI GCWGC 4 cut(s) 91, 155, 490, 722
Tsp45I GTSAC 2 cut(s) 25, 166
TspDTI ATGAA 1 cut(s) 466
TspRI CASTG 5 cut(s) 102, 168, 427, 664, 862
Van91I CCANNNNNTGG 1 cut(s) 718
VpaK11BI GGWCC 1 cut(s) 709
XhoI CTCGAG 1 cut(s) 83
XspI CTAG 4 cut(s) 224, 248, 270, 874
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.