Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0010173

Physical Location & Seq

Genomic Coordinates Reverse (-)

59930324 .. 59932855

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG364400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAATTGCCCACAGGATTGGCCCGAGCCTATTGTCCGAGTACAGTCCCTGTCAGAAAACGGCGTCGTACCCGATCGGTACATCAAACCACCGACGGAAAGACCAAGCTCCGATCACCCCACCGACGCCAACATCCCCATCATCGACTTCCAACCCTTGCTATCATCAGATAACGGCGACGATGGTCTCCGTGCCGCCACACTTGCTAAAATCTCAGAGGCTTGCCGGGAGTGGGGCTTCTTTCAGATAGTGAACCACGGCGTCAGTCCAGAACTGTTGGACCAGACGCAGAAGGTTTGGCGGGAGTTTTTCCATTTGCCGATGGAGATGAAACAGGCCTATGCCAACTCGCCCAAGACTTATGAAGGGTATGGGAGCAGGCTTGGAGTTGAGAAAGGCGCCATTCTTGACTGGAGTGACTACTATTTCCTTCACTTTCTTCCGTTTTGTTTGAAGGACTACAACAAGTGGCCTTCCATCCCGGACGGCAGGGAAGTGATAGATGAGTATGGGAGGGAAGTAGTGAAGCTGTGCGGGAGATTAATGAAGGCTTTATCACTAAACATTGGATTAGAGGAAGATTTTCTTCAAAACAAATTTGGAGGGCAAGACATTGGGGCTTGTCTAAGAGTAAATTTCTACCCAAAATGTCCTCAGCCAGACCTCACTCTTGGTCTCTCATCACACTCCGACCCAGGAGGCATGACCTTGCTACTATGTGATGAACATGTCGCCGGTCTTCAAGTCCGAAAAGATAACAGTTGGATCACTGTGAAACCAGCTCCCCATGCTTTTATCGTCAATATCGGAGATCAAATTCAGGTTTTAAGTAATGCAATGTACAAGAGCGTTGAGCATAGAGTGCTCGTAAACCCAGCCCAGGAGCGACTGTCACTTGCATTCTTCTACAATCCAAAGAGTGACATACCCATCGAGCCGGTAAAAGAGCTCGTCACGGCGGATAGACCTGCACTATACCCGCCAAAGACATTTGACGAATACCGGCTTTACATAAGAATGAGGGGTCCGAAGGGAAAATCCCAAGTCGACTCCATAAAATGTCCGCGAGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009628 GO:0009636 GO:0009966 GO:0009987 GO:0010646 GO:0016787 GO:0016810 GO:0023051 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0080167 GO:0097237 GO:0120091 GO:2000022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

357

Amino Acids

40.41

Weight (kDa)

5.81

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	45 - 159	1.9e-32	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	207 - 305	2.1e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05600 AT5G05600
fragaria_vesca	FvH4_7g24550 FvH4_7g24550 FvH4_7g24550
malus_domestica	MD01G1153600.v1.1 MD07G1222600.v1.1
prunus_persica	Prupe.2G250900_v2.0.a1
pyrus_communis	pycom01g17120 pycom07g20130
rosa_chinensis	RchiOBHm_Chr1g0370391
rosa_laevigata	RLG00000027052
rosa_multiflora	Rmu_sc0005656.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286630
rosa_rugosa	Rorug01G0356100
rosa_samantha	Rh1AG364400 Rh1BG327700 Rh1CG340700 Rh1DG358000
rosa_wichuraiana	Rw1G032070 Rw1G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	976
AccB1I	GGYRCC	1 cut(s)	398
AccI	GTMKAC	1 cut(s)	1047
AccII	CGCG	1 cut(s)	1066
AciI	CCGC	6 cut(s)	195, 301, 534, 959, 980, 1064
AclWI	GGATC	1 cut(s)	773
AcsI	RAATTY	3 cut(s)	596, 634, 816
AcyI	GRCGYC	4 cut(s)	63, 126, 261, 399
AfaI	GTAC	4 cut(s)	42, 69, 80, 842
AfiI	CCNNNNNNNGG	2 cut(s)	232, 880
AflIII	ACRYGT	1 cut(s)	727
AgsI	TTSAA	3 cut(s)	454, 590, 743
AjnI	CCWGG	2 cut(s)	694, 879
AluBI	AGCT	4 cut(s)	108, 529, 782, 949
AluI	AGCT	4 cut(s)	108, 529, 782, 949
Alw21I	GWGCWC	2 cut(s)	867, 951
Alw26I	GTCTC	2 cut(s)	191, 680
AlwI	GGATC	1 cut(s)	773
AlwNI	CAGNNNCTG	1 cut(s)	49
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	3 cut(s)	20, 336, 470
ApoI	RAATTY	3 cut(s)	596, 634, 816
AseI	ATTAAT	1 cut(s)	542
Asp700I	GAANNNNTTC	1 cut(s)	582
AspLEI	GCGC	1 cut(s)	401
AspS9I	GGNCC	3 cut(s)	21, 280, 1025
AsuC2I	CCSGG	2 cut(s)	227, 482
AsuHPI	GGTGA	1 cut(s)	107
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	2 cut(s)	280, 1025
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	951
BbsI	GAAGAC	1 cut(s)	731
Bbv12I	GWGCWC	2 cut(s)	867, 951
BbvCI	CCTCAGC	1 cut(s)	654
BccI	CCATC	5 cut(s)	146, 176, 316, 485, 938
BceAI	ACGGC	5 cut(s)	76, 190, 274, 502, 972
BciT130I	CCWGG	2 cut(s)	696, 881
BcnI	CCSGG	2 cut(s)	227, 482
BcoDI	GTCTC	2 cut(s)	191, 680
BfoI	RGCGCY	1 cut(s)	402
BfuAI	ACCTGC	1 cut(s)	976
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
Bme1390I	CCNGG	4 cut(s)	227, 482, 696, 881
Bme18I	GGWCC	2 cut(s)	280, 1025
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	3 cut(s)	21, 280, 1025
BmiI	GGNNCC	2 cut(s)	400, 1026
BmrFI	CCNGG	4 cut(s)	227, 482, 696, 881
BoxI	GACNNNNGTC	1 cut(s)	183
BpiI	GAAGAC	1 cut(s)	731
BpmI	CTGGAG	1 cut(s)	433
Bpu10I	CCTNAGC	1 cut(s)	654
BpuMI	CCSGG	2 cut(s)	227, 482
BsaHI	GRCGYC	4 cut(s)	63, 126, 261, 399
BsaI	GGTCTC	2 cut(s)	191, 680
BsaJI	CCNNGG	3 cut(s)	256, 694, 879
BsaXI	ACNNNNNCTCC	2 cut(s)	875, 905
Bsc4I	CCNNNNNNNGG	2 cut(s)	232, 880
Bse118I	RCCGGY	3 cut(s)	734, 937, 1002
Bse1I	ACTGG	1 cut(s)	416
Bse3DI	GCAATG	1 cut(s)	843
BseBI	CCWGG	2 cut(s)	696, 881
BseDI	CCNNGG	3 cut(s)	256, 694, 879
BseGI	GGATG	2 cut(s)	132, 477
BseLI	CCNNNNNNNGG	2 cut(s)	232, 880
BseMI	GCAATG	1 cut(s)	843
BseMII	CTCAG	2 cut(s)	228, 668
BseNI	ACTGG	1 cut(s)	416
BseYI	CCCAGC	1 cut(s)	874
BsgI	GTGCAG	1 cut(s)	954
Bsh1236I	CGCG	1 cut(s)	1066
Bsh1285I	CGRYCG	1 cut(s)	76
BshFI	GGCC	3 cut(s)	22, 338, 472
BshNI	GGYRCC	1 cut(s)	398
BsiEI	CGRYCG	1 cut(s)	76
BsiHKAI	GWGCWC	2 cut(s)	867, 951
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	5 cut(s)	226, 482, 735, 938, 1003
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	2 cut(s)	232, 880
BsmAI	GTCTC	2 cut(s)	191, 680
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	899
BsnI	GGCC	3 cut(s)	22, 338, 472
Bso31I	GGTCTC	2 cut(s)	191, 680
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	867, 951
Bsp1407I	TGTACA	1 cut(s)	840
Bsp143I	GATC	4 cut(s)	73, 112, 765, 811
BspACI	CCGC	6 cut(s)	195, 301, 534, 959, 980, 1064
BspANI	GGCC	3 cut(s)	22, 338, 472
BspCNI	CTCAG	2 cut(s)	227, 667
BspFNI	CGCG	1 cut(s)	1066
BspLI	GGNNCC	2 cut(s)	400, 1026
BspMI	ACCTGC	1 cut(s)	976
BspPI	GGATC	1 cut(s)	773
BspT107I	GGYRCC	1 cut(s)	398
BspTNI	GGTCTC	2 cut(s)	191, 680
BsrDI	GCAATG	1 cut(s)	843
BsrFI	RCCGGY	3 cut(s)	734, 937, 1002
BsrGI	TGTACA	1 cut(s)	840
BsrI	ACTGG	1 cut(s)	416
BssAI	RCCGGY	3 cut(s)	734, 937, 1002
BssECI	CCNNGG	3 cut(s)	256, 694, 879
BssMI	GATC	4 cut(s)	73, 112, 765, 811
BssNI	GRCGYC	4 cut(s)	63, 126, 261, 399
Bst2UI	CCWGG	2 cut(s)	696, 881
Bst4CI	ACNGT	5 cut(s)	45, 276, 761, 772, 891
BstACI	GRCGYC	4 cut(s)	63, 126, 261, 399
BstAPI	GCANNNNNTGC	1 cut(s)	862
BstAUI	TGTACA	1 cut(s)	840
BstC8I	GCNNGC	2 cut(s)	223, 380
BstDEI	CTNAG	3 cut(s)	214, 626, 654
BstDSI	CCRYGG	1 cut(s)	256
BstF5I	GGATG	2 cut(s)	132, 477
BstFNI	CGCG	1 cut(s)	1066
BstH2I	RGCGCY	1 cut(s)	402
BstHHI	GCGC	1 cut(s)	401
BstKTI	GATC	4 cut(s)	76, 115, 768, 814
BstMAI	GTCTC	2 cut(s)	191, 680
BstMBI	GATC	4 cut(s)	73, 112, 765, 811
BstMCI	CGRYCG	1 cut(s)	76
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 788, 862
BstNI	CCWGG	2 cut(s)	696, 881
BstNSI	RCATGY	1 cut(s)	731
BstPAI	GACNNNNGTC	1 cut(s)	183
BstSCI	CCNGG	4 cut(s)	225, 480, 694, 879
BstUI	CGCG	1 cut(s)	1066
BstV2I	GAAGAC	1 cut(s)	731
BstXI	CCANNNNNNTGG	1 cut(s)	18
BsuRI	GGCC	3 cut(s)	22, 338, 472
BtgI	CCRYGG	1 cut(s)	256
BtsCI	GGATG	2 cut(s)	132, 477
BtsIMutI	CAGTG	1 cut(s)	768
BveI	ACCTGC	1 cut(s)	976
Cac8I	GCNNGC	2 cut(s)	223, 380
CaiI	CAGNNNCTG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	401
Cfr10I	RCCGGY	3 cut(s)	734, 937, 1002
Cfr13I	GGNCC	3 cut(s)	21, 280, 1025
CseI	GACGC	4 cut(s)	52, 134, 250, 295
Csp6I	GTAC	4 cut(s)	41, 68, 79, 841
CviAII	CATG	3 cut(s)	703, 728, 788
CviQI	GTAC	4 cut(s)	41, 68, 79, 841
DdeI	CTNAG	3 cut(s)	214, 626, 654
DinI	GGCGCC	1 cut(s)	400
DpnI	GATC	4 cut(s)	75, 114, 767, 813
DpnII	GATC	4 cut(s)	73, 112, 765, 811
EciI	GGCGGA	1 cut(s)	974
Ecl136II	GAGCTC	1 cut(s)	949
Eco147I	AGGCCT	1 cut(s)	338
Eco24I	GRGCYC	1 cut(s)	951
Eco31I	GGTCTC	2 cut(s)	191, 680
Eco47I	GGWCC	2 cut(s)	280, 1025
Eco53kI	GAGCTC	1 cut(s)	949
Eco88I	CYCGRG	1 cut(s)	23
EcoICRI	GAGCTC	1 cut(s)	949
EcoRII	CCWGG	2 cut(s)	694, 879
EcoT38I	GRGCYC	1 cut(s)	951
EgeI	GGCGCC	1 cut(s)	400
EheI	GGCGCC	1 cut(s)	400
FaeI	CATG	3 cut(s)	706, 731, 791
FalI	AAGNNNNNCTT	2 cut(s)	570, 602
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	3 cut(s)	702, 727, 787
FauI	CCCGC	3 cut(s)	294, 527, 987
FblI	GTMKAC	1 cut(s)	1047
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	2 cut(s)	119, 464
FriOI	GRGCYC	1 cut(s)	951
Fsp4HI	GCNGC	1 cut(s)	195
GlaI	GCGC	1 cut(s)	400
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	878
GsuI	CTGGAG	1 cut(s)	433
HaeII	RGCGCY	1 cut(s)	402
HaeIII	GGCC	3 cut(s)	22, 338, 472
HapII	CCGG	5 cut(s)	226, 482, 735, 938, 1003
HgaI	GACGC	4 cut(s)	52, 134, 250, 295
HhaI	GCGC	1 cut(s)	401
Hin1I	GRCGYC	4 cut(s)	63, 126, 261, 399
Hin1II	CATG	3 cut(s)	706, 731, 791
Hin6I	GCGC	1 cut(s)	399
HinP1I	GCGC	1 cut(s)	399
HincII	GTYRAC	1 cut(s)	1048
HindII	GTYRAC	1 cut(s)	1048
HinfI	GANTC	1 cut(s)	1049
HpaII	CCGG	5 cut(s)	226, 482, 735, 938, 1003
HphI	GGTGA	1 cut(s)	107
Hpy166II	GTNNAC	3 cut(s)	253, 871, 1048
Hpy188III	TCNNGA	2 cut(s)	269, 407
Hpy8I	GTNNAC	3 cut(s)	253, 871, 1048
Hpy99I	CGWCG	4 cut(s)	68, 97, 128, 182
HpyAV	CCTTC	7 cut(s)	286, 359, 440, 448, 483, 541, 1024
HpyCH4III	ACNGT	5 cut(s)	45, 276, 761, 772, 891
HpyCH4V	TGCA	3 cut(s)	836, 899, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 788, 862
HpyF3I	CTNAG	3 cut(s)	214, 626, 654
Hsp92I	GRCGYC	4 cut(s)	63, 126, 261, 399
Hsp92II	CATG	3 cut(s)	706, 731, 791
HspAI	GCGC	1 cut(s)	399
KasI	GGCGCC	1 cut(s)	398
Kzo9I	GATC	4 cut(s)	73, 112, 765, 811
LmnI	GCTCC	4 cut(s)	113, 375, 787, 883
MaeIII	GTNAC	4 cut(s)	416, 891, 920, 952
MalI	GATC	4 cut(s)	75, 114, 767, 813
MboI	GATC	4 cut(s)	73, 112, 765, 811
MboII	GAAGA	5 cut(s)	431, 578, 590, 731, 895
MhlI	GDGCHC	2 cut(s)	867, 951
MluCI	AATT	4 cut(s)	4, 596, 634, 816
Mly113I	GGCGCC	1 cut(s)	399
MlyI	GAGTC	1 cut(s)	1043
MmeI	TCCRAC	4 cut(s)	175, 258, 714, 743
MnlI	CCTC	9 cut(s)	211, 507, 568, 596, 663, 674, 692, 1014, 1061
MroXI	GAANNNNTTC	1 cut(s)	582
MseI	TTAA	2 cut(s)	542, 827
MslI	CAYNNNNRTG	1 cut(s)	1016
MspI	CCGG	5 cut(s)	226, 482, 735, 938, 1003
MspR9I	CCNGG	4 cut(s)	227, 482, 696, 881
Mva1269I	GAATGC	1 cut(s)	899
MvaI	CCWGG	2 cut(s)	696, 881
MvnI	CGCG	1 cut(s)	1066
MwoI	GCNNNNNNNGC	3 cut(s)	203, 788, 862
NarI	GGCGCC	1 cut(s)	399
NciI	CCSGG	2 cut(s)	227, 482
NdeII	GATC	4 cut(s)	73, 112, 765, 811
NlaIII	CATG	3 cut(s)	706, 731, 791
NlaIV	GGNNCC	2 cut(s)	400, 1026
NmuCI	GTSAC	4 cut(s)	416, 891, 920, 952
NspI	RCATGY	1 cut(s)	731
PceI	AGGCCT	1 cut(s)	338
PciI	ACATGT	1 cut(s)	727
PctI	GAATGC	1 cut(s)	899
PdmI	GAANNNNTTC	1 cut(s)	582
PfoI	TCCNGGA	1 cut(s)	480
PkrI	GCNGC	1 cut(s)	196
Ple19I	CGATCG	1 cut(s)	76
PleI	GAGTC	1 cut(s)	1043
PluTI	GGCGCC	1 cut(s)	402
PpsI	GAGTC	1 cut(s)	1043
PscI	ACATGT	1 cut(s)	727
PshAI	GACNNNNGTC	1 cut(s)	183
PshBI	ATTAAT	1 cut(s)	542
Psp124BI	GAGCTC	1 cut(s)	951
Psp6I	CCWGG	2 cut(s)	694, 879
PspFI	CCCAGC	1 cut(s)	874
PspGI	CCWGG	2 cut(s)	694, 879
PspN4I	GGNNCC	2 cut(s)	400, 1026
PspPI	GGNCC	3 cut(s)	21, 280, 1025
PstNI	CAGNNNCTG	1 cut(s)	49
PvuI	CGATCG	1 cut(s)	76
RsaI	GTAC	4 cut(s)	42, 69, 80, 842
RsaNI	GTAC	4 cut(s)	41, 68, 79, 841
RseI	CAYNNNNRTG	1 cut(s)	1016
SacI	GAGCTC	1 cut(s)	951
SalI	GTCGAC	1 cut(s)	1046
SaqAI	TTAA	2 cut(s)	542, 827
SatI	GCNGC	1 cut(s)	195
Sau3AI	GATC	4 cut(s)	73, 112, 765, 811
Sau96I	GGNCC	3 cut(s)	21, 280, 1025
SchI	GAGTC	1 cut(s)	1043
ScrFI	CCNGG	4 cut(s)	227, 482, 696, 881
SduI	GDGCHC	2 cut(s)	867, 951
SetI	ASST	9 cut(s)	110, 297, 531, 666, 710, 784, 825, 951, 970
SfoI	GGCGCC	1 cut(s)	400
SinI	GGWCC	2 cut(s)	280, 1025
SmiMI	CAYNNNNRTG	1 cut(s)	1016
Sse9I	AATT	4 cut(s)	4, 596, 634, 816
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	6 cut(s)	195, 301, 534, 959, 980, 1064
SspDI	GGCGCC	1 cut(s)	398
SstI	GAGCTC	1 cut(s)	951
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	4 cut(s)	225, 480, 694, 879
TaaI	ACNGT	5 cut(s)	45, 276, 761, 772, 891
TaqI	TCGA	3 cut(s)	144, 933, 1047
TasI	AATT	4 cut(s)	4, 596, 634, 816
TatI	WGTACW	2 cut(s)	40, 840
TauI	GCSGC	1 cut(s)	197
Tru1I	TTAA	2 cut(s)	542, 827
Tru9I	TTAA	2 cut(s)	542, 827
TscAI	CASTG	1 cut(s)	775
TseFI	GTSAC	4 cut(s)	416, 891, 920, 952
Tsp45I	GTSAC	4 cut(s)	416, 891, 920, 952
TspDTI	ATGAA	5 cut(s)	17, 344, 378, 560, 738
TspGWI	ACGGA	3 cut(s)	110, 179, 432
TspRI	CASTG	1 cut(s)	775
VpaK11BI	GGWCC	2 cut(s)	280, 1025
VspI	ATTAAT	1 cut(s)	542
XapI	RAATTY	3 cut(s)	596, 634, 816
XceI	RCATGY	1 cut(s)	731
XmiI	GTMKAC	1 cut(s)	1047
XmnI	GAANNNNTTC	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.