Rmu_sc0005656.1_g000002

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005656.1
Physical Location & Seq
Reverse (-)
7419 .. 11992
4574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005656.1_g000002.1.cds

Sequence Viewer

Length: 1329 bp
atggattcgagggcggcacagacggcgttgatttgggcgaatttgacatatccaagacccaggaaagttgattttgacaccccgaatcctctctctgcacccgtacccttctctctcgcatctacctcttcacacacactagcccagtttgattccgctgccacaagtcaacaatctcggcaactcctctctttgatatgtcgggatcaaccttggacgccaaaagcagcagcatcagctactaaaatacccatcatgaattgcccacaggattggcccgagcctattgtccgagtacagtccctgtcagaaaacggcgtcgtacccgatcggtacatcaaaccaccgacggaaagaccaagctccgatcaccccaccgacgccaacatccccatcatcgacttccaacccttgctatcatcagataacggcgacgatggtctccgtgccgccacacttgctaaaatctcagaggcttgccgggagtggggcttctttcagatagtgaaccacggcgtcagtccagaactgttggaccagacgcagaaggtttggcgggagtttttccatttgccgatggagatgaaacaggcctatgccaactcgcccaagacttatgaagggtatgggagcaggcttggagttgagaaaggcgccattcttgactggagtgactactatttccttcactttcttccgttttgtttgaaggactacaacaagtggccttccatcccggacggcagggaagtgatagatgagtatgggagggaagtagtgaagctgtgcgggagattaatgaaggctttatcactaaacattggattagaggaagattttcttcaaaacaaatttggagggcaagacattggggcttgtctaagagtaaatttctacccaaaatgtcctcagccagacctcactcttggtctctcatcacactccgacccaggaggcatgaccttgctactatgtgatgaacatgtcgccggtcttcaagtccgaaaagataacagttggatcactgtgaaaccagctccccatgcttttatcgtcaatatcggagatcaaattcaggttttaagtaatgcaatgtacaagagcgttgagcatagagtgctcgtaaacccagccaaggagcgactgtcacttgcattcttctacaatccaaagagtgacatacccatcgagccggtaaaagagctcgtcacggcggatagacctgcactatacccgccaaagacatttgacgaataccggctttacataagaatgaggggtccgaagggaaaatcccaagtcgactccataaaatgtccgcgaggataa

Protein Analysis

442

Amino Acids

49.62

Weight (kDa)

6.52

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0010173)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1231
AccB1I GGYRCC 1 cut(s) 653
AccI GTMKAC 1 cut(s) 1302
AccII CGCG 1 cut(s) 1321
AciI CCGC 8 cut(s) 14, 156, 450, 556, 789, 1214, 1235, 1319
AclWI GGATC 2 cut(s) 213, 1028
AcsI RAATTY 4 cut(s) 40, 851, 889, 1071
AcyI GRCGYC 5 cut(s) 218, 318, 381, 516, 654
AfaI GTAC 5 cut(s) 105, 297, 324, 335, 1097
AfiI CCNNNNNNNGG 2 cut(s) 487, 1135
AflIII ACRYGT 1 cut(s) 982
AgsI TTSAA 3 cut(s) 709, 845, 998
AjnI CCWGG 2 cut(s) 59, 949
AluBI AGCT 5 cut(s) 239, 363, 784, 1037, 1204
AluI AGCT 5 cut(s) 239, 363, 784, 1037, 1204
Alw21I GWGCWC 2 cut(s) 1122, 1206
Alw26I GTCTC 2 cut(s) 446, 935
AlwI GGATC 2 cut(s) 213, 1028
AlwNI CAGNNNCTG 1 cut(s) 304
Ama87I CYCGRG 1 cut(s) 278
AoxI GGCC 3 cut(s) 275, 591, 725
ApeKI GCWGC 3 cut(s) 158, 227, 230
ApoI RAATTY 4 cut(s) 40, 851, 889, 1071
AseI ATTAAT 1 cut(s) 797
Asp700I GAANNNNTTC 1 cut(s) 837
AspLEI GCGC 1 cut(s) 656
AspS9I GGNCC 3 cut(s) 276, 535, 1280
AsuC2I CCSGG 2 cut(s) 482, 737
AsuHPI GGTGA 1 cut(s) 362
AvaI CYCGRG 1 cut(s) 278
AvaII GGWCC 2 cut(s) 535, 1280
BanI GGYRCC 1 cut(s) 653
BanII GRGCYC 1 cut(s) 1206
BbsI GAAGAC 1 cut(s) 986
Bbv12I GWGCWC 2 cut(s) 1122, 1206
BbvCI CCTCAGC 1 cut(s) 909
BbvI GCAGC 3 cut(s) 145, 239, 242
BccI CCATC 6 cut(s) 260, 401, 431, 571, 740, 1193
BceAI ACGGC 6 cut(s) 39, 331, 445, 529, 757, 1227
BciT130I CCWGG 2 cut(s) 61, 951
BcnI CCSGG 2 cut(s) 482, 737
BcoDI GTCTC 2 cut(s) 446, 935
BfaI CTAG 1 cut(s) 140
BfoI RGCGCY 1 cut(s) 657
BfuAI ACCTGC 1 cut(s) 1231
BisI GCNGC 5 cut(s) 15, 159, 228, 231, 450
BlsI GCNGC 5 cut(s) 16, 160, 229, 232, 451
Bme1390I CCNGG 4 cut(s) 61, 482, 737, 951
Bme18I GGWCC 2 cut(s) 535, 1280
BmeT110I CYCGRG 1 cut(s) 278
BmgT120I GGNCC 3 cut(s) 276, 535, 1280
BmiI GGNNCC 2 cut(s) 655, 1281
BmrFI CCNGG 4 cut(s) 61, 482, 737, 951
BmrI ACTGGG 1 cut(s) 139
BmsI GCATC 2 cut(s) 128, 242
BmuI ACTGGG 1 cut(s) 139
BoxI GACNNNNGTC 1 cut(s) 438
BpiI GAAGAC 1 cut(s) 986
BpmI CTGGAG 1 cut(s) 688
Bpu10I CCTNAGC 1 cut(s) 909
BpuMI CCSGG 2 cut(s) 482, 737
BsaHI GRCGYC 5 cut(s) 218, 318, 381, 516, 654
BsaI GGTCTC 2 cut(s) 446, 935
BsaJI CCNNGG 5 cut(s) 59, 212, 511, 949, 1134
BsaXI ACNNNNNCTCC 2 cut(s) 1130, 1160
Bsc4I CCNNNNNNNGG 2 cut(s) 487, 1135
Bse118I RCCGGY 3 cut(s) 989, 1192, 1257
Bse1I ACTGG 2 cut(s) 145, 671
Bse3DI GCAATG 1 cut(s) 1098
BseBI CCWGG 2 cut(s) 61, 951
BseDI CCNNGG 5 cut(s) 59, 212, 511, 949, 1134
BseGI GGATG 2 cut(s) 387, 732
BseLI CCNNNNNNNGG 2 cut(s) 487, 1135
BseMI GCAATG 1 cut(s) 1098
BseMII CTCAG 2 cut(s) 483, 923
BseNI ACTGG 2 cut(s) 145, 671
BseRI GAGGAG 1 cut(s) 176
BseXI GCAGC 3 cut(s) 145, 239, 242
BseYI CCCAGC 1 cut(s) 1129
BsgI GTGCAG 2 cut(s) 81, 1209
Bsh1236I CGCG 1 cut(s) 1321
Bsh1285I CGRYCG 1 cut(s) 331
BshFI GGCC 3 cut(s) 277, 593, 727
BshNI GGYRCC 1 cut(s) 653
BsiEI CGRYCG 1 cut(s) 331
BsiHKAI GWGCWC 2 cut(s) 1122, 1206
BsiHKCI CYCGRG 1 cut(s) 278
BsiSI CCGG 5 cut(s) 481, 737, 990, 1193, 1258
BslFI GGGAC 1 cut(s) 286
BslI CCNNNNNNNGG 2 cut(s) 487, 1135
BsmAI GTCTC 2 cut(s) 446, 935
BsmFI GGGAC 1 cut(s) 286
BsmI GAATGC 1 cut(s) 1154
BsnI GGCC 3 cut(s) 277, 593, 727
Bso31I GGTCTC 2 cut(s) 446, 935
BsoBI CYCGRG 1 cut(s) 278
Bsp1286I GDGCHC 2 cut(s) 1122, 1206
Bsp1407I TGTACA 1 cut(s) 1095
Bsp143I GATC 5 cut(s) 205, 328, 367, 1020, 1066
BspACI CCGC 8 cut(s) 14, 156, 450, 556, 789, 1214, 1235, 1319
BspANI GGCC 3 cut(s) 277, 593, 727
BspCNI CTCAG 2 cut(s) 482, 922
BspFNI CGCG 1 cut(s) 1321
BspHI TCATGA 1 cut(s) 255
BspLI GGNNCC 2 cut(s) 655, 1281
BspMI ACCTGC 1 cut(s) 1231
BspPI GGATC 2 cut(s) 213, 1028
BspT107I GGYRCC 1 cut(s) 653
BspTNI GGTCTC 2 cut(s) 446, 935
BsrDI GCAATG 1 cut(s) 1098
BsrFI RCCGGY 3 cut(s) 989, 1192, 1257
BsrGI TGTACA 1 cut(s) 1095
BsrI ACTGG 2 cut(s) 145, 671
BssAI RCCGGY 3 cut(s) 989, 1192, 1257
BssECI CCNNGG 5 cut(s) 59, 212, 511, 949, 1134
BssMI GATC 5 cut(s) 205, 328, 367, 1020, 1066
BssNI GRCGYC 5 cut(s) 218, 318, 381, 516, 654
BssT1I CCWWGG 2 cut(s) 212, 1134
Bst2UI CCWGG 2 cut(s) 61, 951
Bst4CI ACNGT 5 cut(s) 300, 531, 1016, 1027, 1146
Bst6I CTCTTC 1 cut(s) 133
BstACI GRCGYC 5 cut(s) 218, 318, 381, 516, 654
BstAPI GCANNNNNTGC 1 cut(s) 1117
BstAUI TGTACA 1 cut(s) 1095
BstC8I GCNNGC 2 cut(s) 478, 635
BstDEI CTNAG 3 cut(s) 469, 881, 909
BstDSI CCRYGG 1 cut(s) 511
BstF5I GGATG 2 cut(s) 387, 732
BstFNI CGCG 1 cut(s) 1321
BstH2I RGCGCY 1 cut(s) 657
BstHHI GCGC 1 cut(s) 656
BstKTI GATC 5 cut(s) 208, 331, 370, 1023, 1069
BstMAI GTCTC 2 cut(s) 446, 935
BstMBI GATC 5 cut(s) 205, 328, 367, 1020, 1066
BstMCI CGRYCG 1 cut(s) 331
BstMWI GCNNNNNNNGC 5 cut(s) 23, 236, 458, 1043, 1117
BstNI CCWGG 2 cut(s) 61, 951
BstNSI RCATGY 1 cut(s) 986
BstPAI GACNNNNGTC 1 cut(s) 438
BstSCI CCNGG 4 cut(s) 59, 480, 735, 949
BstUI CGCG 1 cut(s) 1321
BstV1I GCAGC 3 cut(s) 145, 239, 242
BstV2I GAAGAC 1 cut(s) 986
BstXI CCANNNNNNTGG 1 cut(s) 273
BsuRI GGCC 3 cut(s) 277, 593, 727
BtgI CCRYGG 1 cut(s) 511
BtsCI GGATG 2 cut(s) 387, 732
BtsIMutI CAGTG 1 cut(s) 1023
BveI ACCTGC 1 cut(s) 1231
Cac8I GCNNGC 2 cut(s) 478, 635
CaiI CAGNNNCTG 1 cut(s) 304
CciI TCATGA 1 cut(s) 255
CfoI GCGC 1 cut(s) 656
Cfr10I RCCGGY 3 cut(s) 989, 1192, 1257
Cfr13I GGNCC 3 cut(s) 276, 535, 1280
CseI GACGC 5 cut(s) 226, 307, 389, 505, 550
Csp6I GTAC 5 cut(s) 104, 296, 323, 334, 1096
CviAII CATG 4 cut(s) 256, 958, 983, 1043
CviQI GTAC 5 cut(s) 104, 296, 323, 334, 1096
DdeI CTNAG 3 cut(s) 469, 881, 909
DinI GGCGCC 1 cut(s) 655
DpnI GATC 5 cut(s) 207, 330, 369, 1022, 1068
DpnII GATC 5 cut(s) 205, 328, 367, 1020, 1066
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
EciI GGCGGA 1 cut(s) 1229
Ecl136II GAGCTC 1 cut(s) 1204
Eco130I CCWWGG 2 cut(s) 212, 1134
Eco147I AGGCCT 1 cut(s) 593
Eco24I GRGCYC 1 cut(s) 1206
Eco31I GGTCTC 2 cut(s) 446, 935
Eco47I GGWCC 2 cut(s) 535, 1280
Eco53kI GAGCTC 1 cut(s) 1204
Eco88I CYCGRG 1 cut(s) 278
EcoICRI GAGCTC 1 cut(s) 1204
EcoRII CCWGG 2 cut(s) 59, 949
EcoT14I CCWWGG 2 cut(s) 212, 1134
EcoT38I GRGCYC 1 cut(s) 1206
EgeI GGCGCC 1 cut(s) 655
EheI GGCGCC 1 cut(s) 655
ErhI CCWWGG 2 cut(s) 212, 1134
FaeI CATG 4 cut(s) 259, 961, 986, 1046
FalI AAGNNNNNCTT 2 cut(s) 825, 857
FaqI GGGAC 1 cut(s) 286
FatI CATG 4 cut(s) 255, 957, 982, 1042
FauI CCCGC 3 cut(s) 549, 782, 1242
FblI GTMKAC 1 cut(s) 1302
Fnu4HI GCNGC 5 cut(s) 15, 159, 228, 231, 450
FokI GGATG 2 cut(s) 374, 719
FriOI GRGCYC 1 cut(s) 1206
Fsp4HI GCNGC 5 cut(s) 15, 159, 228, 231, 450
FspBI CTAG 1 cut(s) 140
GlaI GCGC 1 cut(s) 655
GluI GCNGC 5 cut(s) 15, 159, 228, 231, 450
GsaI CCCAGC 1 cut(s) 1133
GsuI CTGGAG 1 cut(s) 688
HaeII RGCGCY 1 cut(s) 657
HaeIII GGCC 3 cut(s) 277, 593, 727
HapII CCGG 5 cut(s) 481, 737, 990, 1193, 1258
HgaI GACGC 5 cut(s) 226, 307, 389, 505, 550
HhaI GCGC 1 cut(s) 656
Hin1I GRCGYC 5 cut(s) 218, 318, 381, 516, 654
Hin1II CATG 4 cut(s) 259, 961, 986, 1046
Hin6I GCGC 1 cut(s) 654
HinP1I GCGC 1 cut(s) 654
HincII GTYRAC 2 cut(s) 170, 1303
HindII GTYRAC 2 cut(s) 170, 1303
HinfI GANTC 4 cut(s) 5, 85, 152, 1304
HpaII CCGG 5 cut(s) 481, 737, 990, 1193, 1258
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 4 cut(s) 170, 508, 1126, 1303
Hpy188III TCNNGA 4 cut(s) 203, 256, 524, 662
Hpy8I GTNNAC 4 cut(s) 170, 508, 1126, 1303
Hpy99I CGWCG 4 cut(s) 323, 352, 383, 437
HpyAV CCTTC 8 cut(s) 118, 541, 614, 695, 703, 738, 796, 1279
HpyCH4III ACNGT 5 cut(s) 300, 531, 1016, 1027, 1146
HpyCH4V TGCA 4 cut(s) 98, 1091, 1154, 1226
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 236, 458, 1043, 1117
HpyF3I CTNAG 3 cut(s) 469, 881, 909
Hsp92I GRCGYC 5 cut(s) 218, 318, 381, 516, 654
Hsp92II CATG 4 cut(s) 259, 961, 986, 1046
HspAI GCGC 1 cut(s) 654
KasI GGCGCC 1 cut(s) 653
Kzo9I GATC 5 cut(s) 205, 328, 367, 1020, 1066
LmnI GCTCC 4 cut(s) 368, 630, 1042, 1138
Lsp1109I GCAGC 3 cut(s) 145, 239, 242
LweI GCATC 2 cut(s) 128, 242
MaeI CTAG 1 cut(s) 140
MaeIII GTNAC 4 cut(s) 671, 1146, 1175, 1207
MalI GATC 5 cut(s) 207, 330, 369, 1022, 1068
MboI GATC 5 cut(s) 205, 328, 367, 1020, 1066
MboII GAAGA 6 cut(s) 120, 686, 833, 845, 986, 1150
MhlI GDGCHC 2 cut(s) 1122, 1206
MluCI AATT 5 cut(s) 40, 259, 851, 889, 1071
Mly113I GGCGCC 1 cut(s) 654
MlyI GAGTC 1 cut(s) 1298
MmeI TCCRAC 4 cut(s) 430, 513, 969, 998
MroXI GAANNNNTTC 1 cut(s) 837
MseI TTAA 2 cut(s) 797, 1082
MslI CAYNNNNRTG 1 cut(s) 1271
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 5 cut(s) 481, 737, 990, 1193, 1258
MspR9I CCNGG 4 cut(s) 61, 482, 737, 951
Mva1269I GAATGC 1 cut(s) 1154
MvaI CCWGG 2 cut(s) 61, 951
MvnI CGCG 1 cut(s) 1321
MwoI GCNNNNNNNGC 5 cut(s) 23, 236, 458, 1043, 1117
NarI GGCGCC 1 cut(s) 654
NciI CCSGG 2 cut(s) 482, 737
NdeII GATC 5 cut(s) 205, 328, 367, 1020, 1066
NlaIII CATG 4 cut(s) 259, 961, 986, 1046
NlaIV GGNNCC 2 cut(s) 655, 1281
NmeAIII GCCGAG 1 cut(s) 157
NmuCI GTSAC 4 cut(s) 671, 1146, 1175, 1207
NspI RCATGY 1 cut(s) 986
PagI TCATGA 1 cut(s) 255
PceI AGGCCT 1 cut(s) 593
PciI ACATGT 1 cut(s) 982
PctI GAATGC 1 cut(s) 1154
PdmI GAANNNNTTC 1 cut(s) 837
PfeI GAWTC 3 cut(s) 5, 85, 152
PfoI TCCNGGA 1 cut(s) 735
PkrI GCNGC 5 cut(s) 16, 160, 229, 232, 451
Ple19I CGATCG 1 cut(s) 331
PleI GAGTC 1 cut(s) 1298
PluTI GGCGCC 1 cut(s) 657
PpsI GAGTC 1 cut(s) 1298
PscI ACATGT 1 cut(s) 982
PshAI GACNNNNGTC 1 cut(s) 438
PshBI ATTAAT 1 cut(s) 797
Psp124BI GAGCTC 1 cut(s) 1206
Psp6I CCWGG 2 cut(s) 59, 949
PspFI CCCAGC 1 cut(s) 1129
PspGI CCWGG 2 cut(s) 59, 949
PspN4I GGNNCC 2 cut(s) 655, 1281
PspPI GGNCC 3 cut(s) 276, 535, 1280
PstNI CAGNNNCTG 1 cut(s) 304
PvuI CGATCG 1 cut(s) 331
RsaI GTAC 5 cut(s) 105, 297, 324, 335, 1097
RsaNI GTAC 5 cut(s) 104, 296, 323, 334, 1096
RseI CAYNNNNRTG 1 cut(s) 1271
SacI GAGCTC 1 cut(s) 1206
SalI GTCGAC 1 cut(s) 1301
SaqAI TTAA 2 cut(s) 797, 1082
SatI GCNGC 5 cut(s) 15, 159, 228, 231, 450
Sau3AI GATC 5 cut(s) 205, 328, 367, 1020, 1066
Sau96I GGNCC 3 cut(s) 276, 535, 1280
SchI GAGTC 1 cut(s) 1298
ScrFI CCNGG 4 cut(s) 61, 482, 737, 951
SduI GDGCHC 2 cut(s) 1122, 1206
SfaNI GCATC 2 cut(s) 128, 242
SfoI GGCGCC 1 cut(s) 655
SinI GGWCC 2 cut(s) 535, 1280
SmiMI CAYNNNNRTG 1 cut(s) 1271
Sse9I AATT 5 cut(s) 40, 259, 851, 889, 1071
SseBI AGGCCT 1 cut(s) 593
SsiI CCGC 8 cut(s) 14, 156, 450, 556, 789, 1214, 1235, 1319
SspDI GGCGCC 1 cut(s) 653
SspMI CTAG 1 cut(s) 140
SstI GAGCTC 1 cut(s) 1206
StuI AGGCCT 1 cut(s) 593
StyD4I CCNGG 4 cut(s) 59, 480, 735, 949
StyI CCWWGG 2 cut(s) 212, 1134
TaaI ACNGT 5 cut(s) 300, 531, 1016, 1027, 1146
TaqI TCGA 4 cut(s) 8, 399, 1188, 1302
TasI AATT 5 cut(s) 40, 259, 851, 889, 1071
TatI WGTACW 2 cut(s) 295, 1095
TauI GCSGC 2 cut(s) 17, 452
TfiI GAWTC 3 cut(s) 5, 85, 152
Tru1I TTAA 2 cut(s) 797, 1082
Tru9I TTAA 2 cut(s) 797, 1082
TscAI CASTG 1 cut(s) 1030
TseFI GTSAC 4 cut(s) 671, 1146, 1175, 1207
TseI GCWGC 3 cut(s) 158, 227, 230
Tsp45I GTSAC 4 cut(s) 671, 1146, 1175, 1207
TspDTI ATGAA 5 cut(s) 272, 599, 633, 815, 993
TspGWI ACGGA 3 cut(s) 365, 434, 687
TspRI CASTG 1 cut(s) 1030
VpaK11BI GGWCC 2 cut(s) 535, 1280
VspI ATTAAT 1 cut(s) 797
XapI RAATTY 4 cut(s) 40, 851, 889, 1071
XceI RCATGY 1 cut(s) 986
XmiI GTMKAC 1 cut(s) 1302
XmnI GAANNNNTTC 1 cut(s) 837
XspI CTAG 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.