Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0010173

Physical Location & Seq

Genomic Coordinates Reverse (-)

18929924 .. 18932697

Gene Structure 2774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24550.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGAATTGCCCGCAGGATTGGCCTGAGCCTATTGTCCGAGTACAGTCCCTGTCGGAAAAAGGCGTCGTGCCTGACCGCTACATCAAGCCCTTAACGGAAAGACCAAGCTCCGACCACCCCATCCACGCCAATATCCCCATCATCGACTTCCAACCCTTGCTTTCATCATCATCAGACGACGACGATGGCCTTCGTGCCGCCACACTTGATAAAATCTCAGAGGCTTGCCGGGACTGGGGCTTCTTTCAGATTGTGAACCACGGCGTCAGTCCGGAACTGATGGACAAGACGCAGAAGGTTTGGCGGGAGTTTTTCCATTTGCCGATGGAGATGAAGCAGGCCTATGCTAACTCACCCAAGACTTATGAAGGGTATGGGAGCAGGCTTGGAGTTGAGAAAGGCGCCATTCTTGATTGGAGTGACTACTATTTCCTTCACTTTCTTCCCTTTTGTTTGAAGGATTACAACAAGTGGCCTGCTTCCATCCCAGACGGCAGGGAAGTGATAGATGAGTATGGGAGAGAAGTAGTCAAGCTGTGTGGGAGATTGATGAAGGCTTTATCACTGAACCTTGGATTAGGGGAAGATTTTCTTCAAACCAAATTTGGAGGGCAAGATATTGGAGCTTGTCTAAGAGTGAACTTCTACCCCAAGTGTCCTCAGCCAGACCTCACTCTTGGTCTCTCATCGCACTCAGACCCAGGAGGCATGACTTTGCTGCTCTGCGATGAACATGTCGCCGGTCTTCAAGTCCGGAAAGATAACAGTTGGATCACTGTGAAACCAGCTCCCCATGCTTTTATCGTCAATATCGGAGATCAAATTCAGGTTTTGAGTAATGCAACGTACAAGAGCGTTGAGCATAGAGTGATCGTAAATCCAGCCAAGGAGCGACTGTCATTGGCATTCTTCTACAATCCAAAGAGTGACATACCCATCGAGCCGGCGAAAGAGCTTGTCACGGCGGATAGACCTGCGTTATACCCGCCGAAGACATTTGACGAATACCGGCTTTACATAAGATTGAGGGGTCCGAAGGGAAAATCTCAAGTAGACTCCTCAAAATGTATGCGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0009628 GO:0009636 GO:0009966 GO:0009987 GO:0010646 GO:0016787 GO:0016810 GO:0023051 GO:0042221 GO:0044424 GO:0044444 GO:0044464 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0080167 GO:0097237 GO:0120091 GO:2000022

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

360

Amino Acids

40.56

Weight (kDa)

6.32

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	45 - 160	7.2e-33	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	209 - 307	5e-34	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010173)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05600 AT5G05600
fragaria_vesca	FvH4_7g24550 FvH4_7g24550 FvH4_7g24550
malus_domestica	MD01G1153600.v1.1 MD07G1222600.v1.1
prunus_persica	Prupe.2G250900_v2.0.a1
pyrus_communis	pycom01g17120 pycom07g20130
rosa_chinensis	RchiOBHm_Chr1g0370391
rosa_laevigata	RLG00000027052
rosa_multiflora	Rmu_sc0005656.1_g000002
rosa_roxburghii	Rroxscaffold_4G00286630
rosa_rugosa	Rorug01G0356100
rosa_samantha	Rh1AG364400 Rh1BG327700 Rh1CG340700 Rh1DG358000
rosa_wichuraiana	Rw1G032070 Rw1G032120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	982
AccB1I	GGYRCC	1 cut(s)	401
AccI	GTMKAC	1 cut(s)	1053
AccIII	TCCGGA	2 cut(s)	271, 753
AciI	CCGC	6 cut(s)	11, 76, 198, 304, 965, 986
AclWI	GGATC	1 cut(s)	779
AcsI	RAATTY	2 cut(s)	602, 822
AcyI	GRCGYC	3 cut(s)	63, 264, 402
AfaI	GTAC	2 cut(s)	42, 848
AfiI	CCNNNNNNNGG	1 cut(s)	235
AflIII	ACRYGT	1 cut(s)	733
AgsI	TTSAA	3 cut(s)	457, 596, 749
AjnI	CCWGG	1 cut(s)	700
AluBI	AGCT	5 cut(s)	108, 535, 626, 788, 955
AluI	AGCT	5 cut(s)	108, 535, 626, 788, 955
Alw26I	GTCTC	1 cut(s)	686
AlwI	GGATC	1 cut(s)	779
AlwNI	CAGNNNCTG	1 cut(s)	49
Aor13HI	TCCGGA	2 cut(s)	271, 753
AoxI	GGCC	4 cut(s)	20, 187, 339, 473
ApeKI	GCWGC	1 cut(s)	718
ApoI	RAATTY	2 cut(s)	602, 822
Asp700I	GAANNNNTTC	1 cut(s)	588
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	1031
AsuC2I	CCSGG	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	345
AvaII	GGWCC	1 cut(s)	1031
BanI	GGYRCC	1 cut(s)	401
BbsI	GAAGAC	2 cut(s)	737, 998
BbvCI	CCTCAGC	1 cut(s)	660
BbvI	GCAGC	1 cut(s)	705
BccI	CCATC	7 cut(s)	128, 146, 179, 274, 319, 491, 944
BceAI	ACGGC	3 cut(s)	277, 508, 978
BciT130I	CCWGG	1 cut(s)	702
BcnI	CCSGG	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	686
BfoI	RGCGCY	1 cut(s)	405
BfuAI	ACCTGC	1 cut(s)	982
BisI	GCNGC	2 cut(s)	198, 719
BlsI	GCNGC	2 cut(s)	199, 720
Bme1390I	CCNGG	2 cut(s)	230, 702
Bme18I	GGWCC	1 cut(s)	1031
BmgT120I	GGNCC	1 cut(s)	1031
BmiI	GGNNCC	2 cut(s)	403, 1032
BmrFI	CCNGG	2 cut(s)	230, 702
BmrI	ACTGGG	1 cut(s)	244
BmuI	ACTGGG	1 cut(s)	244
BpiI	GAAGAC	2 cut(s)	737, 998
Bpu10I	CCTNAGC	2 cut(s)	24, 660
BpuEI	CTTGAG	1 cut(s)	1032
BpuMI	CCSGG	1 cut(s)	230
BsaHI	GRCGYC	3 cut(s)	63, 264, 402
BsaI	GGTCTC	1 cut(s)	686
BsaJI	CCNNGG	4 cut(s)	259, 571, 700, 885
BsaWI	WCCGGW	2 cut(s)	271, 753
BsaXI	ACNNNNNCTCC	2 cut(s)	881, 911
Bsc4I	CCNNNNNNNGG	1 cut(s)	235
Bse118I	RCCGGY	3 cut(s)	740, 943, 1008
Bse1I	ACTGG	1 cut(s)	239
BseAI	TCCGGA	2 cut(s)	271, 753
BseBI	CCWGG	1 cut(s)	702
BseDI	CCNNGG	4 cut(s)	259, 571, 700, 885
BseGI	GGATG	2 cut(s)	120, 483
BseLI	CCNNNNNNNGG	1 cut(s)	235
BseMII	CTCAG	4 cut(s)	15, 231, 674, 708
BseNI	ACTGG	1 cut(s)	239
BseRI	GAGGAG	1 cut(s)	1048
BseXI	GCAGC	1 cut(s)	705
BshFI	GGCC	4 cut(s)	22, 189, 341, 475
BshNI	GGYRCC	1 cut(s)	401
BsiSI	CCGG	6 cut(s)	229, 272, 741, 754, 944, 1009
BslFI	GGGAC	2 cut(s)	31, 245
BslI	CCNNNNNNNGG	1 cut(s)	235
BsmAI	GTCTC	1 cut(s)	686
BsmFI	GGGAC	2 cut(s)	31, 245
BsmI	GAATGC	1 cut(s)	905
BsnI	GGCC	4 cut(s)	22, 189, 341, 475
Bso31I	GGTCTC	1 cut(s)	686
Bsp13I	TCCGGA	2 cut(s)	271, 753
Bsp143I	GATC	3 cut(s)	771, 817, 870
BspACI	CCGC	6 cut(s)	11, 76, 198, 304, 965, 986
BspANI	GGCC	4 cut(s)	22, 189, 341, 475
BspCNI	CTCAG	4 cut(s)	16, 230, 673, 707
BspEI	TCCGGA	2 cut(s)	271, 753
BspLI	GGNNCC	2 cut(s)	403, 1032
BspMI	ACCTGC	1 cut(s)	982
BspPI	GGATC	1 cut(s)	779
BspT107I	GGYRCC	1 cut(s)	401
BspTNI	GGTCTC	1 cut(s)	686
BsrFI	RCCGGY	3 cut(s)	740, 943, 1008
BsrI	ACTGG	1 cut(s)	239
BssAI	RCCGGY	3 cut(s)	740, 943, 1008
BssECI	CCNNGG	4 cut(s)	259, 571, 700, 885
BssMI	GATC	3 cut(s)	771, 817, 870
BssNI	GRCGYC	3 cut(s)	63, 264, 402
BssT1I	CCWWGG	2 cut(s)	571, 885
Bst2UI	CCWGG	1 cut(s)	702
Bst4CI	ACNGT	4 cut(s)	45, 767, 778, 897
BstACI	GRCGYC	3 cut(s)	63, 264, 402
BstC8I	GCNNGC	6 cut(s)	11, 226, 339, 383, 477, 945
BstDEI	CTNAG	5 cut(s)	24, 217, 632, 660, 694
BstDSI	CCRYGG	1 cut(s)	259
BstF5I	GGATG	2 cut(s)	120, 483
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	3 cut(s)	774, 820, 873
BstMAI	GTCTC	1 cut(s)	686
BstMBI	GATC	3 cut(s)	771, 817, 870
BstMWI	GCNNNNNNNGC	2 cut(s)	19, 794
BstNI	CCWGG	1 cut(s)	702
BstNSI	RCATGY	1 cut(s)	737
BstSCI	CCNGG	2 cut(s)	228, 700
BstV1I	GCAGC	1 cut(s)	705
BstV2I	GAAGAC	2 cut(s)	737, 998
BsuRI	GGCC	4 cut(s)	22, 189, 341, 475
BtgI	CCRYGG	1 cut(s)	259
BtgZI	GCGATG	2 cut(s)	672, 741
BtsCI	GGATG	2 cut(s)	120, 483
BtsIMutI	CAGTG	2 cut(s)	563, 774
BveI	ACCTGC	1 cut(s)	982
Cac8I	GCNNGC	6 cut(s)	11, 226, 339, 383, 477, 945
CaiI	CAGNNNCTG	1 cut(s)	49
CfoI	GCGC	1 cut(s)	404
Cfr10I	RCCGGY	3 cut(s)	740, 943, 1008
Cfr13I	GGNCC	1 cut(s)	1031
CseI	GACGC	3 cut(s)	52, 253, 298
Csp6I	GTAC	2 cut(s)	41, 847
CspCI	CAANNNNNGTGG	2 cut(s)	520, 555
CviAII	CATG	3 cut(s)	709, 734, 794
CviQI	GTAC	2 cut(s)	41, 847
DdeI	CTNAG	5 cut(s)	24, 217, 632, 660, 694
DinI	GGCGCC	1 cut(s)	403
DpnI	GATC	3 cut(s)	773, 819, 872
DpnII	GATC	3 cut(s)	771, 817, 870
EciI	GGCGGA	1 cut(s)	980
Eco130I	CCWWGG	2 cut(s)	571, 885
Eco147I	AGGCCT	1 cut(s)	341
Eco31I	GGTCTC	1 cut(s)	686
Eco47I	GGWCC	1 cut(s)	1031
EcoRII	CCWGG	1 cut(s)	700
EcoT14I	CCWWGG	2 cut(s)	571, 885
EgeI	GGCGCC	1 cut(s)	403
EheI	GGCGCC	1 cut(s)	403
ErhI	CCWWGG	2 cut(s)	571, 885
FaeI	CATG	3 cut(s)	712, 737, 797
FalI	AAGNNNNNCTT	2 cut(s)	576, 608
FaqI	GGGAC	2 cut(s)	31, 245
FatI	CATG	3 cut(s)	708, 733, 793
FauI	CCCGC	3 cut(s)	18, 297, 993
FblI	GTMKAC	1 cut(s)	1053
Fnu4HI	GCNGC	2 cut(s)	198, 719
FokI	GGATG	2 cut(s)	107, 470
Fsp4HI	GCNGC	2 cut(s)	198, 719
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	2 cut(s)	198, 719
HaeII	RGCGCY	1 cut(s)	405
HaeIII	GGCC	4 cut(s)	22, 189, 341, 475
HapII	CCGG	6 cut(s)	229, 272, 741, 754, 944, 1009
HgaI	GACGC	3 cut(s)	52, 253, 298
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	3 cut(s)	63, 264, 402
Hin1II	CATG	3 cut(s)	712, 737, 797
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HinfI	GANTC	1 cut(s)	1055
HpaII	CCGG	6 cut(s)	229, 272, 741, 754, 944, 1009
HphI	GGTGA	1 cut(s)	345
Hpy166II	GTNNAC	3 cut(s)	256, 640, 1054
Hpy188I	TCNGA	9 cut(s)	38, 55, 112, 175, 220, 249, 697, 815, 1035
Hpy188III	TCNNGA	3 cut(s)	272, 410, 754
Hpy8I	GTNNAC	3 cut(s)	256, 640, 1054
Hpy99I	CGWCG	3 cut(s)	68, 182, 185
HpyAV	CCTTC	7 cut(s)	200, 289, 362, 443, 451, 547, 1030
HpyCH4III	ACNGT	4 cut(s)	45, 767, 778, 897
HpyCH4IV	ACGT	1 cut(s)	845
HpyCH4V	TGCA	1 cut(s)	842
HpyF10VI	GCNNNNNNNGC	2 cut(s)	19, 794
HpyF3I	CTNAG	5 cut(s)	24, 217, 632, 660, 694
HpySE526I	ACGT	1 cut(s)	845
Hsp92I	GRCGYC	3 cut(s)	63, 264, 402
Hsp92II	CATG	3 cut(s)	712, 737, 797
HspAI	GCGC	1 cut(s)	402
KasI	GGCGCC	1 cut(s)	401
Kpn2I	TCCGGA	2 cut(s)	271, 753
KroI	GCCGGC	1 cut(s)	943
KroNI	GCCGGC	1 cut(s)	945
Kzo9I	GATC	3 cut(s)	771, 817, 870
LmnI	GCTCC	5 cut(s)	113, 378, 623, 793, 889
Lsp1109I	GCAGC	1 cut(s)	705
MaeII	ACGT	1 cut(s)	845
MaeIII	GTNAC	3 cut(s)	419, 926, 958
MalI	GATC	3 cut(s)	773, 819, 872
MboI	GATC	3 cut(s)	771, 817, 870
MboII	GAAGA	6 cut(s)	434, 584, 596, 737, 901, 1003
MluCI	AATT	3 cut(s)	4, 602, 822
Mly113I	GGCGCC	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	1049
MmeI	TCCRAC	4 cut(s)	33, 135, 175, 749
MnlI	CCTC	8 cut(s)	214, 602, 669, 680, 698, 1020, 1067, 1069
MroI	TCCGGA	2 cut(s)	271, 753
MroNI	GCCGGC	1 cut(s)	943
MroXI	GAANNNNTTC	1 cut(s)	588
MseI	TTAA	1 cut(s)	92
MspI	CCGG	6 cut(s)	229, 272, 741, 754, 944, 1009
MspR9I	CCNGG	2 cut(s)	230, 702
Mva1269I	GAATGC	1 cut(s)	905
MvaI	CCWGG	1 cut(s)	702
MwoI	GCNNNNNNNGC	2 cut(s)	19, 794
NaeI	GCCGGC	1 cut(s)	945
NarI	GGCGCC	1 cut(s)	402
NciI	CCSGG	1 cut(s)	230
NdeII	GATC	3 cut(s)	771, 817, 870
NgoMIV	GCCGGC	1 cut(s)	943
NlaIII	CATG	3 cut(s)	712, 737, 797
NlaIV	GGNNCC	2 cut(s)	403, 1032
NmuCI	GTSAC	3 cut(s)	419, 926, 958
NspI	RCATGY	1 cut(s)	737
PceI	AGGCCT	1 cut(s)	341
PciI	ACATGT	1 cut(s)	733
PctI	GAATGC	1 cut(s)	905
PdiI	GCCGGC	1 cut(s)	945
PdmI	GAANNNNTTC	1 cut(s)	588
PkrI	GCNGC	2 cut(s)	199, 720
PleI	GAGTC	1 cut(s)	1049
PluTI	GGCGCC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	1049
PscI	ACATGT	1 cut(s)	733
Psp6I	CCWGG	1 cut(s)	700
PspGI	CCWGG	1 cut(s)	700
PspN4I	GGNNCC	2 cut(s)	403, 1032
PspPI	GGNCC	1 cut(s)	1031
PstNI	CAGNNNCTG	1 cut(s)	49
RsaI	GTAC	2 cut(s)	42, 848
RsaNI	GTAC	2 cut(s)	41, 847
SaqAI	TTAA	1 cut(s)	92
SatI	GCNGC	2 cut(s)	198, 719
Sau3AI	GATC	3 cut(s)	771, 817, 870
Sau96I	GGNCC	1 cut(s)	1031
SchI	GAGTC	1 cut(s)	1049
ScrFI	CCNGG	2 cut(s)	230, 702
SfoI	GGCGCC	1 cut(s)	403
SinI	GGWCC	1 cut(s)	1031
SmlI	CTYRAG	1 cut(s)	1047
SmoI	CTYRAG	1 cut(s)	1047
Sse9I	AATT	3 cut(s)	4, 602, 822
SseBI	AGGCCT	1 cut(s)	341
SsiI	CCGC	6 cut(s)	11, 76, 198, 304, 965, 986
SspDI	GGCGCC	1 cut(s)	401
StuI	AGGCCT	1 cut(s)	341
StyD4I	CCNGG	2 cut(s)	228, 700
StyI	CCWWGG	2 cut(s)	571, 885
TaaI	ACNGT	4 cut(s)	45, 767, 778, 897
TaiI	ACGT	1 cut(s)	848
TaqI	TCGA	2 cut(s)	144, 939
TasI	AATT	3 cut(s)	4, 602, 822
TatI	WGTACW	1 cut(s)	40
TauI	GCSGC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	92
Tru9I	TTAA	1 cut(s)	92
TscAI	CASTG	2 cut(s)	570, 781
TseFI	GTSAC	3 cut(s)	419, 926, 958
TseI	GCWGC	1 cut(s)	718
Tsp45I	GTSAC	3 cut(s)	419, 926, 958
TspDTI	ATGAA	6 cut(s)	17, 153, 347, 381, 566, 744
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	2 cut(s)	570, 781
VpaK11BI	GGWCC	1 cut(s)	1031
XapI	RAATTY	2 cut(s)	602, 822
XceI	RCATGY	1 cut(s)	737
XmiI	GTMKAC	1 cut(s)	1053
XmnI	GAANNNNTTC	1 cut(s)	588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.