Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015390

Physical Location & Seq

Genomic Coordinates Reverse (-)

1728893 .. 1731090

Gene Structure 2198 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G05760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGGCTCGACGTTCAGAGATCGGACGGTGGAGCTTCATTCACTGTCCCAAACATTGAAGAAGATCGGGGCAATCCCGTCCGTTCATCAAGATGAAGATGATCCGGCATCATCCAAACGGTCGTCTCCGGGATCCGAATTCAATAAGAAGGCTTCCCGGATCGGGTTAGGTATTAAAGAAACGTCACAGAAGATCACGAGGCTCGCTAAATTGGCAAAACAATCGACGATTTTCAATGACCGGACTGTGGAAATACAGGAGTTAACTGTGTTGATCAGGAACGATATCACGGGGCTGAATATGGCTCTCTCGGATTTGCAAACCCTTCAGAACATGGAGCTTGCTGATGGGAACTATTCACAGGACCAAGTTGGTCATTACACTGCTGTTTGTGATGACTTGAAAACCAGACTTATGGGAGCTACTAAGCAGCTTCAAGATGTTCTAACTACGAGATCAGAGAACATGAAGGCTCATGAAAACCGGAAACAACTCTTTTCCACAAAAAATGCAGTAGATAGTCCGCCTCAGAATAATGCAAAATCTGTACCTGAGCCTCCTCCTTGGTCAAGTTCATCAAATCCTTTCGGGAATTTACAACAACCACTATTACCTCCATTAAATACTGGAGCTCCGCCAGGTAGCCAGCTCAGACGCAGATCCGCGATCGAGAATGCTCCTTCACAGCAAATGGAGATGTCCTTGTTGCAGCAAACAGTCCCAAAGCAGGAGAACTATAGCCAAAGTCGAGCGGTTGCACTTCACAGTGTTGAATCAAGAATAACAGAGCTCAGTGGAATATTCCCGCAGCTAGCTACAATGGTCACACAACAAGGAGAGCTAGCAATCAGAATCGATGACAATATGGATGAATCGTTAGTTAATGTAGAGGGAGCACGTAGCGCTCTTCTGCAGCATCTCACTCGAATTTCGTCAAATAGATGGCTCATGATGAAGATCTTTGCTGTTATCATCTTGTTCCTGATTGTTTTCCTCTTCTTTGTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009504 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin-5_N

Protein Analysis

336

Amino Acids

37.31

Weight (kDa)

8.59

Isoelectric Point (pI)

64.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	281 - 332	4.6e-13	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015390)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05760
fragaria_vesca	FvH4_7g24180 FvH4_7g24180 FvH4_7g24180
malus_domestica	MD01G1149000.v1.1
prunus_persica	Prupe.2G247700_v2.0.a1
pyrus_communis	pycom01g16740
rosa_chinensis	RchiOBHm_Chr1g0369761
rosa_laevigata	RLG00000027109
rosa_multiflora	Rmu_sc0001154.1_g000030
rosa_roxburghii	Rroxscaffold_4G00287410
rosa_rugosa	Rorug01G0352100
rosa_samantha	Rh1BG324100 Rh1CG337300 Rh1DG354600
rosa_wichuraiana	Rw1G031740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	752
AccII	CGCG	1 cut(s)	665
AciI	CCGC	5 cut(s)	524, 635, 663, 752, 806
AclWI	GGATC	5 cut(s)	95, 126, 139, 167, 654
AcsI	RAATTY	3 cut(s)	137, 592, 927
AcuI	CTGAAG	1 cut(s)	311
AfaI	GTAC	1 cut(s)	549
AfeI	AGCGCT	1 cut(s)	904
AfiI	CCNNNNNNNGG	3 cut(s)	162, 247, 727
AgsI	TTSAA	6 cut(s)	58, 142, 235, 403, 437, 773
AjnI	CCWGG	1 cut(s)	637
Alw21I	GWGCWC	3 cut(s)	634, 792, 898
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	5 cut(s)	95, 126, 139, 167, 654
Aor51HI	AGCGCT	1 cut(s)	904
ApeKI	GCWGC	4 cut(s)	430, 709, 808, 913
ApoI	RAATTY	3 cut(s)	137, 592, 927
AspLEI	GCGC	1 cut(s)	905
AspS9I	GGNCC	1 cut(s)	364
AsuC2I	CCSGG	2 cut(s)	129, 157
AsuNHI	GCTAGC	2 cut(s)	811, 841
AvaII	GGWCC	1 cut(s)	364
BamHI	GGATCC	1 cut(s)	131
BanII	GRGCYC	3 cut(s)	8, 634, 792
BauI	CACGAG	1 cut(s)	196
Bbv12I	GWGCWC	3 cut(s)	634, 792, 898
BbvI	GCAGC	4 cut(s)	442, 721, 820, 925
BccI	CCATC	2 cut(s)	341, 936
BcgI	CGANNNNNNTGC	4 cut(s)	204, 238, 905, 939
BciT130I	CCWGG	1 cut(s)	639
BclI	TGATCA	1 cut(s)	273
BcnI	CCSGG	2 cut(s)	129, 157
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	2 cut(s)	812, 842
BfmI	CTRYAG	2 cut(s)	736, 911
BfoI	RGCGCY	1 cut(s)	906
BglII	AGATCT	1 cut(s)	957
BisI	GCNGC	4 cut(s)	431, 710, 809, 914
BlsI	GCNGC	4 cut(s)	432, 711, 810, 915
Bme1390I	CCNGG	3 cut(s)	129, 157, 639
Bme18I	GGWCC	1 cut(s)	364
BmgT120I	GGNCC	1 cut(s)	364
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	3 cut(s)	129, 157, 639
BmsI	GCATC	2 cut(s)	116, 925
BmtI	GCTAGC	2 cut(s)	815, 845
BpmI	CTGGAG	1 cut(s)	648
Bpu10I	CCTNAGC	1 cut(s)	552
BpuMI	CCSGG	2 cut(s)	129, 157
Bsa29I	ATCGAT	1 cut(s)	855
BsaAI	YACGTR	1 cut(s)	899
BsaBI	GATNNNNATC	1 cut(s)	956
BsaJI	CCNNGG	1 cut(s)	563
BsaWI	WCCGGW	2 cut(s)	240, 483
BsaXI	ACNNNNNCTCC	2 cut(s)	616, 646
Bsc4I	CCNNNNNNNGG	3 cut(s)	162, 247, 727
Bse1I	ACTGG	1 cut(s)	631
Bse8I	GATNNNNATC	1 cut(s)	956
BseBI	CCWGG	1 cut(s)	639
BseCI	ATCGAT	1 cut(s)	855
BseDI	CCNNGG	1 cut(s)	563
BseGI	GGATG	2 cut(s)	110, 874
BseJI	GATNNNNATC	1 cut(s)	956
BseLI	CCNNNNNNNGG	3 cut(s)	162, 247, 727
BseMII	CTCAG	4 cut(s)	542, 543, 664, 805
BseNI	ACTGG	1 cut(s)	631
BseRI	GAGGAG	1 cut(s)	549
BseXI	GCAGC	4 cut(s)	442, 721, 820, 925
Bsh1236I	CGCG	1 cut(s)	665
Bsh1285I	CGRYCG	2 cut(s)	122, 669
BshVI	ATCGAT	1 cut(s)	855
BsiEI	CGRYCG	2 cut(s)	122, 669
BsiHKAI	GWGCWC	3 cut(s)	634, 792, 898
BsiSI	CCGG	5 cut(s)	104, 128, 157, 241, 484
BslFI	GGGAC	2 cut(s)	31, 704
BslI	CCNNNNNNNGG	3 cut(s)	162, 247, 727
BsmAI	GTCTC	1 cut(s)	129
BsmBI	CGTCTC	1 cut(s)	129
BsmFI	GGGAC	2 cut(s)	31, 704
BsmI	GAATGC	1 cut(s)	679
Bsp1286I	GDGCHC	4 cut(s)	8, 634, 792, 898
BspACI	CCGC	5 cut(s)	524, 635, 663, 752, 806
BspCNI	CTCAG	4 cut(s)	541, 544, 663, 804
BspDI	ATCGAT	1 cut(s)	855
BspFNI	CGCG	1 cut(s)	665
BspHI	TCATGA	2 cut(s)	475, 948
BspLI	GGNNCC	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	915
BspOI	GCTAGC	2 cut(s)	815, 845
BspPI	GGATC	5 cut(s)	95, 126, 139, 167, 654
BspQI	GCTCTTC	1 cut(s)	912
BsrBI	CCGCTC	1 cut(s)	752
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	1 cut(s)	563
BssSI	CACGAG	1 cut(s)	196
BssT1I	CCWWGG	1 cut(s)	563
Bst2BI	CACGAG	1 cut(s)	196
Bst2UI	CCWGG	1 cut(s)	639
Bst4CI	ACNGT	7 cut(s)	28, 45, 120, 247, 268, 718, 767
Bst6I	CTCTTC	2 cut(s)	912, 1001
BstBAI	YACGTR	1 cut(s)	899
BstC8I	GCNNGC	5 cut(s)	204, 342, 647, 813, 843
BstDEI	CTNAG	5 cut(s)	426, 528, 552, 650, 791
BstF5I	GGATG	2 cut(s)	110, 874
BstFNI	CGCG	1 cut(s)	665
BstH2I	RGCGCY	1 cut(s)	906
BstHHI	GCGC	1 cut(s)	905
BstMAI	GTCTC	1 cut(s)	129
BstMCI	CGRYCG	2 cut(s)	122, 669
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 902
BstNI	CCWGG	1 cut(s)	639
BstSCI	CCNGG	3 cut(s)	127, 155, 637
BstSFI	CTRYAG	2 cut(s)	736, 911
BstUI	CGCG	1 cut(s)	665
BstV1I	GCAGC	4 cut(s)	442, 721, 820, 925
BstX2I	RGATCY	3 cut(s)	131, 659, 957
BstXI	CCANNNNNNTGG	1 cut(s)	415
BstYI	RGATCY	3 cut(s)	131, 659, 957
Bsu15I	ATCGAT	1 cut(s)	855
BsuTUI	ATCGAT	1 cut(s)	855
BtsCI	GGATG	2 cut(s)	110, 874
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	4 cut(s)	41, 381, 772, 799
Cac8I	GCNNGC	5 cut(s)	204, 342, 647, 813, 843
CciI	TCATGA	2 cut(s)	475, 948
CfoI	GCGC	1 cut(s)	905
Cfr13I	GGNCC	1 cut(s)	364
ClaI	ATCGAT	1 cut(s)	855
CseI	GACGC	1 cut(s)	663
Csp6I	GTAC	1 cut(s)	548
CviAII	CATG	4 cut(s)	334, 466, 476, 949
CviQI	GTAC	1 cut(s)	548
DdeI	CTNAG	5 cut(s)	426, 528, 552, 650, 791
Eam1104I	CTCTTC	2 cut(s)	912, 1001
EarI	CTCTTC	2 cut(s)	912, 1001
EciI	GGCGGA	2 cut(s)	513, 624
Ecl136II	GAGCTC	2 cut(s)	632, 790
Eco130I	CCWWGG	1 cut(s)	563
Eco24I	GRGCYC	3 cut(s)	8, 634, 792
Eco32I	GATATC	1 cut(s)	286
Eco47I	GGWCC	1 cut(s)	364
Eco47III	AGCGCT	1 cut(s)	904
Eco53kI	GAGCTC	2 cut(s)	632, 790
Eco57I	CTGAAG	1 cut(s)	311
EcoICRI	GAGCTC	2 cut(s)	632, 790
EcoRI	GAATTC	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	637
EcoRV	GATATC	1 cut(s)	286
EcoT14I	CCWWGG	1 cut(s)	563
EcoT38I	GRGCYC	3 cut(s)	8, 634, 792
ErhI	CCWWGG	1 cut(s)	563
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	4 cut(s)	337, 469, 479, 952
FaiI	YATR	8 cut(s)	302, 335, 416, 467, 477, 738, 866, 950
FaqI	GGGAC	2 cut(s)	31, 704
FatI	CATG	4 cut(s)	333, 465, 475, 948
FauI	CCCGC	1 cut(s)	813
FbaI	TGATCA	1 cut(s)	273
Fnu4HI	GCNGC	4 cut(s)	431, 710, 809, 914
FokI	GGATG	2 cut(s)	97, 881
FriOI	GRGCYC	3 cut(s)	8, 634, 792
Fsp4HI	GCNGC	4 cut(s)	431, 710, 809, 914
FspBI	CTAG	2 cut(s)	812, 842
GlaI	GCGC	1 cut(s)	904
GluI	GCNGC	4 cut(s)	431, 710, 809, 914
GsuI	CTGGAG	1 cut(s)	648
HaeII	RGCGCY	1 cut(s)	906
HapII	CCGG	5 cut(s)	104, 128, 157, 241, 484
HgaI	GACGC	1 cut(s)	663
HhaI	GCGC	1 cut(s)	905
Hin1II	CATG	4 cut(s)	337, 469, 479, 952
Hin6I	GCGC	1 cut(s)	903
HinP1I	GCGC	1 cut(s)	903
HincII	GTYRAC	1 cut(s)	264
HindII	GTYRAC	1 cut(s)	264
HinfI	GANTC	3 cut(s)	773, 852, 872
HpaI	GTTAAC	1 cut(s)	264
HpaII	CCGG	5 cut(s)	104, 128, 157, 241, 484
Hpy166II	GTNNAC	1 cut(s)	264
Hpy188I	TCNGA	9 cut(s)	17, 24, 136, 313, 330, 460, 531, 653, 851
Hpy8I	GTNNAC	1 cut(s)	264
Hpy99I	CGWCG	2 cut(s)	13, 229
HpyAV	CCTTC	4 cut(s)	142, 335, 463, 690
HpyCH4III	ACNGT	7 cut(s)	28, 45, 120, 247, 268, 718, 767
HpyCH4IV	ACGT	3 cut(s)	11, 182, 898
HpyCH4V	TGCA	6 cut(s)	319, 512, 539, 709, 758, 913
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 902
HpyF3I	CTNAG	5 cut(s)	426, 528, 552, 650, 791
HpySE526I	ACGT	3 cut(s)	11, 182, 898
Hsp92II	CATG	4 cut(s)	337, 469, 479, 952
HspAI	GCGC	1 cut(s)	903
Ksp22I	TGATCA	1 cut(s)	273
KspAI	GTTAAC	1 cut(s)	264
LguI	GCTCTTC	1 cut(s)	912
LmnI	GCTCC	7 cut(s)	31, 337, 419, 629, 637, 682, 893
Lsp1109I	GCAGC	4 cut(s)	442, 721, 820, 925
LweI	GCATC	2 cut(s)	116, 925
MaeI	CTAG	2 cut(s)	812, 842
MaeII	ACGT	3 cut(s)	11, 182, 898
MaeIII	GTNAC	2 cut(s)	183, 823
MbiI	CCGCTC	1 cut(s)	752
MboII	GAAGA	7 cut(s)	70, 73, 107, 202, 899, 967, 988
MflI	RGATCY	3 cut(s)	131, 659, 957
MhlI	GDGCHC	4 cut(s)	8, 634, 792, 898
MluCI	AATT	4 cut(s)	137, 209, 592, 927
MnlI	CCTC	7 cut(s)	192, 537, 567, 570, 624, 883, 1004
MseI	TTAA	5 cut(s)	174, 263, 620, 882, 1009
MslI	CAYNNNNRTG	1 cut(s)	90
MspI	CCGG	5 cut(s)	104, 128, 157, 241, 484
MspR9I	CCNGG	3 cut(s)	129, 157, 639
Mva1269I	GAATGC	1 cut(s)	679
MvaI	CCWGG	1 cut(s)	639
MvnI	CGCG	1 cut(s)	665
MwoI	GCNNNNNNNGC	2 cut(s)	212, 902
NciI	CCSGG	2 cut(s)	129, 157
NheI	GCTAGC	2 cut(s)	811, 841
NlaIII	CATG	4 cut(s)	337, 469, 479, 952
NlaIV	GGNNCC	1 cut(s)	133
NmuCI	GTSAC	2 cut(s)	183, 823
PagI	TCATGA	2 cut(s)	475, 948
PciSI	GCTCTTC	1 cut(s)	912
PctI	GAATGC	1 cut(s)	679
PfeI	GAWTC	3 cut(s)	773, 852, 872
PfoI	TCCNGGA	2 cut(s)	127, 155
PkrI	GCNGC	4 cut(s)	432, 711, 810, 915
Ple19I	CGATCG	1 cut(s)	669
Ppu21I	YACGTR	1 cut(s)	899
Psp124BI	GAGCTC	2 cut(s)	634, 792
Psp6I	CCWGG	1 cut(s)	637
PspGI	CCWGG	1 cut(s)	637
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	1 cut(s)	364
PstI	CTGCAG	1 cut(s)	915
PsuI	RGATCY	3 cut(s)	131, 659, 957
PvuI	CGATCG	1 cut(s)	669
RsaI	GTAC	1 cut(s)	549
RsaNI	GTAC	1 cut(s)	548
RseI	CAYNNNNRTG	1 cut(s)	90
SacI	GAGCTC	2 cut(s)	634, 792
SapI	GCTCTTC	1 cut(s)	912
SaqAI	TTAA	5 cut(s)	174, 263, 620, 882, 1009
SatI	GCNGC	4 cut(s)	431, 710, 809, 914
Sau96I	GGNCC	1 cut(s)	364
ScrFI	CCNGG	3 cut(s)	129, 157, 639
SduI	GDGCHC	4 cut(s)	8, 634, 792, 898
SfaNI	GCATC	2 cut(s)	116, 925
SfcI	CTRYAG	2 cut(s)	736, 911
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	1 cut(s)	90
Sse9I	AATT	4 cut(s)	137, 209, 592, 927
SsiI	CCGC	5 cut(s)	524, 635, 663, 752, 806
SspI	AATATT	1 cut(s)	801
SspMI	CTAG	2 cut(s)	812, 842
SstI	GAGCTC	2 cut(s)	634, 792
StyD4I	CCNGG	3 cut(s)	127, 155, 637
StyI	CCWWGG	1 cut(s)	563
TaaI	ACNGT	7 cut(s)	28, 45, 120, 247, 268, 718, 767
TaiI	ACGT	3 cut(s)	14, 185, 901
TaqI	TCGA	6 cut(s)	8, 224, 669, 748, 855, 925
TasI	AATT	4 cut(s)	137, 209, 592, 927
TfiI	GAWTC	3 cut(s)	773, 852, 872
Tru1I	TTAA	5 cut(s)	174, 263, 620, 882, 1009
Tru9I	TTAA	5 cut(s)	174, 263, 620, 882, 1009
TscAI	CASTG	4 cut(s)	48, 388, 772, 799
TseFI	GTSAC	2 cut(s)	183, 823
TseI	GCWGC	4 cut(s)	430, 709, 808, 913
Tsp45I	GTSAC	2 cut(s)	183, 823
TspDTI	ATGAA	8 cut(s)	26, 74, 108, 482, 492, 564, 885, 968
TspGWI	ACGGA	1 cut(s)	70
TspRI	CASTG	4 cut(s)	48, 388, 772, 799
VpaK11BI	GGWCC	1 cut(s)	364
XapI	RAATTY	3 cut(s)	137, 592, 927
XspI	CTAG	2 cut(s)	812, 842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.